Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 1.9e-12 3e-09 36.5 0.0 3 38 145 181 143 186 0.90

2 4 8.1e-14 1.3e-10 40.9 0.0 2 39 198 235 197 238 0.94

3 4 5.6e-16 9e-13 47.8 0.0 3 45 254 297 252 297 0.96

4 4 0.37 5.9e+02 0.4 0.1 2 13 305 316 304 316 0.85

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	1.9e-12	3e-09	36.5	0.0	3	38	145	181	143	186	0.90
2	4	8.1e-14	1.3e-10	40.9	0.0	2	39	198	235	197	238	0.94
3	4	5.6e-16	9e-13	47.8	0.0	3	45	254	297	252	297	0.96
4	4	0.37	5.9e+02	0.4	0.1	2	13	305	316	304	316	0.85

Coding Sequence: ATGAAAAAGTGTAGGATCAAACGGTCACGATCCCCAGACTCGGATGAAACGAAAATAGCCGAACTGACGCCGGCAATTCAACGGCATATTAAGGAGGAATGTATTACAGATATGGATTGCAGTCAATCGAGGATCATTTATTTGGATCAACGATCGTCTGATACTAAACTTAACAATTTGGCGATGAATGGACTGATGGGTGTTCCAATGGGTTTTATGGACTTTGCACCCGAGCCGCCGGCACCTACGGCGACACCTGTTACAGAAAATATTGATCTCAATACAGCGCCTGGAAATGAGCCTCGTGATCTATCAATGGATATGTACAATTCCGAATCTAGTGAAGACTCAAAAATGCACTTAAATGGTTCACCTACCGAGTCACCACAATATACGGAACTGCATGCGGTCAATCAAAAATCGTGGGGCACCGAAGACATGGAACAAGCGTTGGATGCTTTACGAACTCATAAAATGAGTTTAACAAAAGCGTCAGTCACGTATGGTATTCCGTCCACCACATTGTGGCAACGCGCCCATCGTATGGGTATTGATACTCCGAAACGTGAAGGTCCCATAAAATCGTGGAACGAAGATTCGCTTAACAATGCTCTGGATGCCTTACGAACCGGGCAAATATCTGCGAATAAAGCTTCAAAAGCTTACGGTATTCCGTCGTCAACGTTATATAAAATTGCTCGTCGTGAAGGTATTCGATTGGCGGCTCCATTCAATGCGGCCCCTACAACGTGGTCGTCTGGTGATTTAGAGAAGGCTTTGGATGCTATTCGCGCTGGACAGTCATCAGTACAAAAAGCGAGTACAGAGTTTGGTATACCAACGGGAACTCTATACGGACGGTGCAAAAGGGAAGGTATCGAACTGTCACGTTCGAATCCTACACCGTGGTCCGAGAGTGCTATGATGGAAGCCTTAGATGCGGTTAGGTAA
Protein Sequence: MKKCRIKRSRSPDSDETKIAELTPAIQRHIKEECITDMDCSQSRIIYLDQRSSDTKLNNLAMNGLMGVPMGFMDFAPEPPAPTATPVTENIDLNTAPGNEPRDLSMDMYNSESSEDSKMHLNGSPTESPQYTELHAVNQKSWGTEDMEQALDALRTHKMSLTKASVTYGIPSTTLWQRAHRMGIDTPKREGPIKSWNEDSLNNALDALRTGQISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWSSGDLEKALDAIRAGQSSVQKASTEFGIPTGTLYGRCKREGIELSRSNPTPWSESAMMEALDAVR

Sequence clustering based on sequence similarity using MMseqs2