Sfus014254.1
Basic Information
- Insect
- Sylvicola fuscatus
- Gene Symbol
- -
- Assembly
- GCA_026546915.1
- Location
- JANSTS010006301.1:10530-12641[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.064 4 7.8 4.6 2 23 268 290 267 290 0.88 2 11 8.3e-05 0.0052 16.8 0.2 1 23 298 321 298 321 0.96 3 11 0.029 1.8 8.8 0.7 2 21 336 355 336 356 0.94 4 11 9.2e-06 0.00058 19.9 2.9 1 23 362 385 362 385 0.96 5 11 0.00055 0.035 14.3 1.2 1 23 390 412 390 412 0.97 6 11 0.014 0.89 9.8 3.7 1 23 420 443 420 443 0.98 7 11 0.32 20 5.6 2.3 1 23 448 470 448 470 0.89 8 11 0.00041 0.026 14.7 1.0 1 19 476 494 476 495 0.96 9 11 5.4 3.4e+02 1.7 0.1 2 23 520 542 519 542 0.84 10 11 0.0068 0.42 10.8 1.1 1 23 559 581 559 581 0.97 11 11 0.00064 0.04 14.1 0.4 1 23 586 608 586 608 0.96
Sequence Information
- Coding Sequence
- ATGAACAGTACCCATTCATTGTCTGACGAAAAGACCCTGGCCCTATTCAATAAATGTACTGGTCTCAACGCGGGAATTGACGATTATCTGCCGCAGGGCTTGTGCGTCAAATGCAATAAATTCATCGGCATTTGGAATCTCTACATTCGCGATTGGACGCGCAACAATGAGTGCATGTGGAAGATAACAGAGTGTGACCAGGAGAAGGCGAAAATTATTGAAAAAGCGGAAAACGAGGCAGCTGCGCATCGCATCGAAATGGAGACCATCAAGCACGAGCAGGAAACCTATTTTGATCGCATCATCGAGGTAGGCTCTGAATGTAACGACGATATGATCGAGTACGAGTTCATTGAGGGCTCATCCTTGGATCACCAATACACGCTGAAGCATGAGGAAGAAGAGGAGGCGGAACAGCCGCCACGAATTATGACCATAAAGAAAGCAATTATAACGAGGAAGCCTGTTAAAACTGTTAAGGCAGATACCAAATCTGATGTGCGCGTGGTGTATCGTCATCCGGAACAGGATAATGAGTCCAATGACAACGAGGAGGACGATTATATGCAGGATGAGAACATAGAAAGTTTAGAGATGCTTGAGGACTATGTGACCGATATGAATGCTGACGAGGAAGAAGAGGAAGAGAAAAAATTTATTAAGGGCGATGTAGATGAACTTATGTCGGATCAAAGCTACAAAGCTTATGACGAGGAGGATCAGTTGTGGAATGAGGCTGAACAGCAAGACTTTGAAGAAGCCGAAGAAATCACCAATGAACCAAGCAAATGTGTCGAGTGCACATGCTCTAAATGTGGTGCATCCTTTTCCAGCTATTTGCTACTTGAGAATCATTGCAAGGTTAAACATTCGGGCTTAAATCTAATGCACTTCATTTGCCGCAACTGCGGCGCCGCGTTCTCCAGTCGCAAGAAGCTGCAGGATCACATTGCAAAAGTGCACACTATCACCAATGAGCCGCAAGTCTCGGACACGAAGAAACGCAAGTGTACCAACTGCCATGTCACTTTTGCATCAGTCATTGAATTATTGCACCACGTGAAATCTTGCTCGCCATTCACACACAAATGCAACGAGTGCTCAAAGGAGTTCAAGAACAAAGTGGCTTTGTCCCAGCACATGAAATTGACACATTCGGGCAAGCAGTACATTTGTAATGAGTGCGGCCACAGCTACAAGTCAGCCGCCTCGCTCAGCTTCCATCGTCGAGTGCACAAGGCGCAGCTGGTCGGCGATTTCAAGTGTCGCGTATGCCACAAGCTGCACGATCGCAAGGAATCACTGGAGAAGCACATGGCGACGGCGCACAAAAAGAAAAAGTTCACCTGTAAGGTGTGCGGCTTGGAGTGCTCCACTCAAATTGTTCACCGAATGCACATGGCCTCGCATATTTTGGGGGATGAGCACAAGTGCGACACATGTGGACGTGTCTTCAAGATGTACTCGTCACTAGAGCTTCACAAGCCACGCTGCAAGGGGCCCAATCATACCCCGCAGAAGCGCTACTACATACCAAAGCCGCCATCCGAGGCTTTGGAATGCCCCCTGTGCAACGACACACTGTCTGGAATCACCGAGTTCAAGCAGCATCTGTTCGGGTCGCACGGACATGAGGACATCAATGTTAACGATGTCATTCAGAACATGAAGAAGCACCAGTGCAAAATATGCGGCAACAAATATTTGACGCCACGCGCACTGATGCAGCACACGCAAATTCACGGCAAGAAGCGACACATCTGCAATGTTTGCTCCAAGGCATTCCTGACGCCTGTGCAGCTCAAGTCGCACGTCATTACGCACTTCTCCGTGGAAGCCATTCCCACTGATTCACCGTCTTAA
- Protein Sequence
- MNSTHSLSDEKTLALFNKCTGLNAGIDDYLPQGLCVKCNKFIGIWNLYIRDWTRNNECMWKITECDQEKAKIIEKAENEAAAHRIEMETIKHEQETYFDRIIEVGSECNDDMIEYEFIEGSSLDHQYTLKHEEEEEAEQPPRIMTIKKAIITRKPVKTVKADTKSDVRVVYRHPEQDNESNDNEEDDYMQDENIESLEMLEDYVTDMNADEEEEEEKKFIKGDVDELMSDQSYKAYDEEDQLWNEAEQQDFEEAEEITNEPSKCVECTCSKCGASFSSYLLLENHCKVKHSGLNLMHFICRNCGAAFSSRKKLQDHIAKVHTITNEPQVSDTKKRKCTNCHVTFASVIELLHHVKSCSPFTHKCNECSKEFKNKVALSQHMKLTHSGKQYICNECGHSYKSAASLSFHRRVHKAQLVGDFKCRVCHKLHDRKESLEKHMATAHKKKKFTCKVCGLECSTQIVHRMHMASHILGDEHKCDTCGRVFKMYSSLELHKPRCKGPNHTPQKRYYIPKPPSEALECPLCNDTLSGITEFKQHLFGSHGHEDINVNDVIQNMKKHQCKICGNKYLTPRALMQHTQIHGKKRHICNVCSKAFLTPVQLKSHVITHFSVEAIPTDSPS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -