Basic Information

Insect: Sylvicola fuscatus
Gene Symbol: zfh1
Assembly: GCA_026546915.1
Location: JANSTS010007125.1:25674-29328[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.095 6 7.2 0.2 2 23 55 77 54 77 0.93

2 8 2.5e-05 0.0016 18.5 1.0 3 23 161 181 159 181 0.96

3 8 6.6e-06 0.00041 20.3 7.0 1 23 190 212 190 212 0.99

4 8 0.00023 0.014 15.5 1.2 3 21 220 238 218 239 0.94

5 8 0.0039 0.24 11.6 4.9 2 21 500 519 499 520 0.93

6 8 7.7e-06 0.00049 20.1 0.7 1 23 786 808 786 808 0.93

7 8 1.3e-05 0.00079 19.4 7.5 1 23 814 836 814 836 0.98

8 8 0.00038 0.024 14.8 3.4 1 21 842 862 842 863 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.095	6	7.2	0.2	2	23	55	77	54	77	0.93
2	8	2.5e-05	0.0016	18.5	1.0	3	23	161	181	159	181	0.96
3	8	6.6e-06	0.00041	20.3	7.0	1	23	190	212	190	212	0.99
4	8	0.00023	0.014	15.5	1.2	3	21	220	238	218	239	0.94
5	8	0.0039	0.24	11.6	4.9	2	21	500	519	499	520	0.93
6	8	7.7e-06	0.00049	20.1	0.7	1	23	786	808	786	808	0.93
7	8	1.3e-05	0.00079	19.4	7.5	1	23	814	836	814	836	0.98
8	8	0.00038	0.024	14.8	3.4	1	21	842	862	842	863	0.96

Sequence Information

Coding Sequence: ATGTTGTCCTGTTTGGTTCCTCGATATTTCGAGGATTTGGATCACAACATTATGTCACCGTCAGCATTTCAATTGCAAATTCCATCGCCTAAACTGCCGGGAATGACCAGTGAATTAGAACGTGATAGCGGAAGCTTTCACATGCCACAGATCCATCCAATTCAGTGTCCACAGTGTCGCCAAACATTTTTGGGATACCAAAGTCTTAAGATGCATATGGAGCTGGCGCATGTGGGCAAAGTGGAAGAAAATCGATTCGATCAGCCGTTAATTATCGATACATCAATGTCACCAGTGCCATTGTCTGTGAGCCGGAGCGGATCATTGCTGGACTCGACTGGCTCGTCTCCAATTACCGGAAGCAATGACCGATCGATTAGCCCGAGTACATCGACCGAGGAGAATAATTATCATTTGCCGACGTCAAAGTTTCACACAAAGAACATCGACCTGCCATTTTCATCCAACGGCAATGTGAATTGCAATAAATGCCAGAAAACATTCGCCAACGTCTACCGATTGCAGCGACACATGATCAGCCACGAAGAGTCCGTGCTGCTTAGAAAATTCAAATGCACACAGTGTGACAAGGCGTTCAAATTTAAGCATCATCTTAAAGAACATCTTCGTATTCATTCCGGTGAAAAGCCATTCGGTTGCAACAACTGTGGTAAACGTTTCTCACATTCGGGTTCCTACTCAAGTCACATGACATCAAAAAAGTGCATCAGTATGGGACTGAAGTTAAATGCAGCCCGCAGCGCCGGCATGCACACACAAAAGCTAAATAACTTTTACATGTCGCAACAACATCCCTCCGGTGTACCTGGCCTGACGGTTCCTCTCGCCGATCGCAGCATAGACACAAACGTTGATATGGCCGCCAATATTAAAAATAACAATCTACCATTTCCATCGATGCTGCACAAATACAATAATGGCTATGATGCGATGAACGCTGCATTTTTGGCTTCATTCCAAAACCCATTCTACTCAATGACTGCCCTTGACCCACGAGCAGCGGCTGCAGCTGCCCTCAATCCGTACAGCATACATCGTCTACTTGCTTCCCATCACACTACAATGGAGGCAATCAAACACGTCAATGGCGATGTCGAGGCACAGCACGAATCTCATCACAGCAGTGAATTGCAATCAGATCCAGAGGATATGATTGAAGAAGTGACTGAGGAGAACGAAAATAATTTTAAGGACTCCCGTGATACAGATGACAAGGTGTCTGAACCGAATTCCCCTGAACCGGAGACAAAAGTTAAGGATGAACCCCTGCAACTTTCACTCGGCAATCCCATTGGGAATTCAAGGCCGAATTCGCGTCTAAATTCACTTTCATCGGTGACTCAACGCCTACTGAGAGCCAGTTTACTTAAGTTGGAATCGGAAGAATCAATTGAGAAGTCACCACAGCCATGTCCAATTGCCAAGCAGGAAGTTCGCATTGACCAAGAACAGTCGAGCGAGAATGGCACTACGCTAAGATGCCACCGTTGCAATAAAACATTTTACCACCACACTGAATTGAACCAGCATGAAAAGATGCTCTGTAGCATGAACGACGATCAATTGCATCAATCAGAGTCAATGGCCCTTAGAAGTGGCTACATAGCCGTATCCGGCAGTGAAGATGACGGCGATGATCACAGCAAAAACTCGCTGGACAGTGAACGCAAAGTTCGTATACGTACATCGATCTCTGAGGAACAACAGCAAATCTTAAAAGAACATTACTCTTCCAATGCCCGTCCAAGTCGTGATGAATTTCGAGCAATCGCTCACCGCTTATCGTTGGATCCACGCGTTGTTCAGGTTTGGTTCCAAAACAATCGCTCTAGAGAGCGAAAGATGAATTCTTCAACCCTTAAACTCCAGCAAGCATTCCCAACTAATCCAATTCCTAACGAATCATTCGCTGCTGTGCCAGACCGAATGCCCCACGTATCGGACGAAGATCAACCACTGGATCTTACAGTCAAGAAAGAGCAAGTATCGCCCTTAAACTCGCTGAATTACTTTGCAATACCAAATGAAGATTTCAATGATAACGAAATAATGGATCTTAGTGGCAAACTACAGAGTCCGCCACCGCAGCAATCGTTCGATAATCGCGACCTGCTGTATCCACAGCAATTCTCAAAATCTTTCATGAGCTGGCCGATGTCGAACAAGATCATTCCAGATGTGGCTGCCCACGACATTCGTATGAAACAATATTTTCGTGCGGCCTTCGAGACACAGAACCATCACCAGCAAATGTTGATGCGACACAAGCGCGGATGGCGCAACGAGTCGACGGGCGTAAAACGTATGAAAAAGGAGCCAGAAGTcgagggacaattcgcctgtgacgaatgtgataagacgttcataaaacagagctcattggcacgtcacaaatacgagcattctggtcagcggccttacaagtgcgatgaatgtccaaaggcgttcaagcacaagcatcatctgacagagcacaagcgcctgcacagtggcgagaagccgttccagtgtcccaagtgtcttaagcgtttctcgcactcgggatcttacagccagcatatgaaTCATCGGTTTTCTAATTGCAAACCTGACGGCATGTGA
Protein Sequence: MLSCLVPRYFEDLDHNIMSPSAFQLQIPSPKLPGMTSELERDSGSFHMPQIHPIQCPQCRQTFLGYQSLKMHMELAHVGKVEENRFDQPLIIDTSMSPVPLSVSRSGSLLDSTGSSPITGSNDRSISPSTSTEENNYHLPTSKFHTKNIDLPFSSNGNVNCNKCQKTFANVYRLQRHMISHEESVLLRKFKCTQCDKAFKFKHHLKEHLRIHSGEKPFGCNNCGKRFSHSGSYSSHMTSKKCISMGLKLNAARSAGMHTQKLNNFYMSQQHPSGVPGLTVPLADRSIDTNVDMAANIKNNNLPFPSMLHKYNNGYDAMNAAFLASFQNPFYSMTALDPRAAAAAALNPYSIHRLLASHHTTMEAIKHVNGDVEAQHESHHSSELQSDPEDMIEEVTEENENNFKDSRDTDDKVSEPNSPEPETKVKDEPLQLSLGNPIGNSRPNSRLNSLSSVTQRLLRASLLKLESEESIEKSPQPCPIAKQEVRIDQEQSSENGTTLRCHRCNKTFYHHTELNQHEKMLCSMNDDQLHQSESMALRSGYIAVSGSEDDGDDHSKNSLDSERKVRIRTSISEEQQQILKEHYSSNARPSRDEFRAIAHRLSLDPRVVQVWFQNNRSRERKMNSSTLKLQQAFPTNPIPNESFAAVPDRMPHVSDEDQPLDLTVKKEQVSPLNSLNYFAIPNEDFNDNEIMDLSGKLQSPPPQQSFDNRDLLYPQQFSKSFMSWPMSNKIIPDVAAHDIRMKQYFRAAFETQNHHQQMLMRHKRGWRNESTGVKRMKKEPEVEGQFACDECDKTFIKQSSLARHKYEHSGQRPYKCDECPKAFKHKHHLTEHKRLHSGEKPFQCPKCLKRFSHSGSYSQHMNHRFSNCKPDGM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01382810;
90% Identity: iTF_01382810;
80% Identity: iTF_01382810;