Sfus014255.1
Basic Information
- Insect
- Sylvicola fuscatus
- Gene Symbol
- -
- Assembly
- GCA_026546915.1
- Location
- JANSTS010006301.1:13346-15777[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 1.3 79 3.7 1.6 3 21 236 253 234 254 0.90 2 13 0.00047 0.029 14.5 0.1 2 23 299 320 298 320 0.96 3 13 0.88 55 4.2 1.7 3 22 328 347 327 349 0.83 4 13 0.017 1.1 9.6 4.1 1 23 357 379 357 379 0.97 5 13 1.6 1e+02 3.3 0.1 1 7 392 398 392 413 0.69 6 13 4.7e-06 0.00029 20.8 0.6 1 23 419 441 419 441 0.96 7 13 0.0003 0.019 15.1 2.2 1 23 446 468 446 468 0.96 8 13 0.0003 0.018 15.1 1.9 2 23 474 496 474 496 0.97 9 13 0.0053 0.33 11.2 0.7 1 23 501 523 501 523 0.96 10 13 0.0018 0.11 12.6 2.5 1 20 528 547 528 549 0.94 11 13 3.7 2.3e+02 2.2 0.0 2 23 568 590 567 590 0.86 12 13 1.8e-06 0.00011 22.1 0.6 3 23 609 629 607 629 0.98 13 13 8.2e-06 0.00051 20.0 1.3 1 23 635 657 635 657 0.97
Sequence Information
- Coding Sequence
- ATGGTAAATTTTGAGTTGAAACCAACTTGCATTGTTCCACAATGTTGTGCTGACCTGTTAAAGCAGTCCTCAGTTAGGTATCACCGTGTACCACTCAATGATGTTGAAAGAACAATAAAGTGGCTAATTGCTGTCGACCGCAAAGATTTATCAGGCCGATTAAGGGATAAAATGTGTGTTTGCTCACTTCATTTTGCACCTGAAAATTTTGCCCAAGGTAAACTGAAAAAGTCTGCGATTCCTGACACCAATCTTCCACAAACAAAGGAAACGACGCTCCACAATGACTTTATTCAAATGTCACAGGACGTAGTTGCTGGTGAATACCAACATATGACTGAAGCATTGATGGCTGCAAAATGGGCCAACACTTGTCGAGCATGTTTAGCTCCCATCGAAGATGATCCAGAGGATTTGTTTGATAATGTCAACAAAACACTTTTCCAACAATGTACATCATTGGAACCGAGCTTACACGACTACTTGCCACAGAACCTTTGCGGTGGATGTCATTCGATGTGCTGGGGATGGTTTAAGTTCAAGATTACATGCGAACGTAATCAGAGTTTGTTGCAATCTTTGCTTCGACAACATATGAATGAATATTCTAAAGATTACGAGCCCAAGGCACAAACAACGGTTAGTAGCGCCGTTCAAACAATATTCAATTATGAGCATTTGGTTGTCAACGACACAGGCCTAGACTGTCGTGAGTGCAATTTCACATTTCCTGCCTCGGAATTCTTCCAACACCAATGTAATGCAGAGCAGGAATCTAAAGTGCCTTTAAGCGATCTCGATTCAATTCAGTCAGATTCTTCTGAAGTTACAGACCTACCAACTAATCGAGATCAACGGACTGATTTTAAAGTGGATGATAACACTGGCACTTTAATGTGTCCAGATTGTGGAATGCAATTTAAGCAACTGGCTAAACTGAAGCCACATCTAATGAGTCATGCACTGGTGAAGGAAGCAAAATGCATTAAATGCAACCAAATATTCACAAACACAGTTCAATTAGAAGAGCATTGCACGACCGAGCATCCACAAGAAGTAATAAGAAGCTATTTCTGCCAATACTGTGACGGGAATTTTTCCCGCTACAAATTCCTCCTAAAACACACGTACAAACACGAAGGAGTGCTGGCGGCATTATCTCATGGCGCCAAATACAAGTGTCCCAAGTGTGACGACATCAAAATCAGCGAAACAGCATTAAAAAACCACGTCAAGGAGTGTGTACCATACAGCTACACGTGTGCCCAGTGCAACAAGGCGTTCAAAAATCCTGCATTGCTGCGCCGCCACAAATCCGAGCACAATCCCAACGAGTATTTGTGCAATACGTGCGGCAAAGTCTACAAATGCAAGTCATCACTGAAAGCTCACGCCCTGACACACATGGAGCGCACAGCCAAGTGTGAGGTGTGCCACCGCAACTTCTTCGGCATAGCCAATCTGAACAAGCACATGAAACGCGTCCATTCAGCGGAGAAGCATGCCTGCGAATTTTGTTTAATGGAATTCAAAAGCTCAAAGGCTATTCGTGCACATATGGCCACCCACATGGCGCGTCAGTTTAAGTGCGACTTCTGCCAAAAAACGTTCAAGTTCCAAATTTCATTGGACAAGCACAAAGAGAAATGTTTTGCCGGTAAAAAAGTCACGGTAAAGAAAAAGACGCGCGGCGAGGTTGTCTATTGTCCCGTCTGCAGTCTGGATTTTGCTGCTGTGCCAGCTGTAAGGCAGCATCTTCAGGAAGTGCATCGTGATGATGGCATTGACATTGACCGGGCGTTTGAGAGCATCAAAGTGTTTGGTTGCAGCCAATGTGGAAAAAGTTTTGCCACAATGCGGAATCTAAAGGATCACATGGCAACTCATTCAACAAACAAGCCCCACGAGTGCGAGGTGTGCAAGAAGAGGTTCAGGGACACAAGCCAACTGGCTGTACACTTGATTAAGCACAGGAATGAACTGAAAACCGTCGATACTTTGGTGCAACAAAACTGA
- Protein Sequence
- MVNFELKPTCIVPQCCADLLKQSSVRYHRVPLNDVERTIKWLIAVDRKDLSGRLRDKMCVCSLHFAPENFAQGKLKKSAIPDTNLPQTKETTLHNDFIQMSQDVVAGEYQHMTEALMAAKWANTCRACLAPIEDDPEDLFDNVNKTLFQQCTSLEPSLHDYLPQNLCGGCHSMCWGWFKFKITCERNQSLLQSLLRQHMNEYSKDYEPKAQTTVSSAVQTIFNYEHLVVNDTGLDCRECNFTFPASEFFQHQCNAEQESKVPLSDLDSIQSDSSEVTDLPTNRDQRTDFKVDDNTGTLMCPDCGMQFKQLAKLKPHLMSHALVKEAKCIKCNQIFTNTVQLEEHCTTEHPQEVIRSYFCQYCDGNFSRYKFLLKHTYKHEGVLAALSHGAKYKCPKCDDIKISETALKNHVKECVPYSYTCAQCNKAFKNPALLRRHKSEHNPNEYLCNTCGKVYKCKSSLKAHALTHMERTAKCEVCHRNFFGIANLNKHMKRVHSAEKHACEFCLMEFKSSKAIRAHMATHMARQFKCDFCQKTFKFQISLDKHKEKCFAGKKVTVKKKTRGEVVYCPVCSLDFAAVPAVRQHLQEVHRDDGIDIDRAFESIKVFGCSQCGKSFATMRNLKDHMATHSTNKPHECEVCKKRFRDTSQLAVHLIKHRNELKTVDTLVQQN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -