Sfus012847.1
Basic Information
- Insect
- Sylvicola fuscatus
- Gene Symbol
- znf711
- Assembly
- GCA_026546915.1
- Location
- JANSTS010013900.1:32529-36987[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.39 24 5.3 0.0 2 23 6 27 5 27 0.97 2 14 0.13 8.2 6.8 2.3 1 23 962 985 962 985 0.83 3 14 0.018 1.1 9.5 0.4 1 23 1095 1117 1095 1117 0.96 4 14 4.2e-06 0.00027 20.9 1.6 2 23 1120 1141 1120 1141 0.97 5 14 0.00063 0.039 14.1 3.0 1 23 1147 1169 1147 1169 0.98 6 14 0.00028 0.018 15.2 1.7 2 23 1176 1198 1175 1198 0.96 7 14 0.59 37 4.7 0.9 5 23 1213 1231 1212 1231 0.95 8 14 0.13 8.1 6.8 4.9 3 23 1238 1259 1236 1259 0.91 9 14 5.6 3.5e+02 1.7 0.6 3 23 1274 1293 1273 1293 0.87 10 14 4e-05 0.0025 17.8 1.2 1 19 1299 1317 1299 1321 0.94 11 14 3.6e-06 0.00022 21.2 1.2 1 23 1329 1351 1329 1351 0.99 12 14 5.6e-05 0.0035 17.4 1.6 1 23 1357 1379 1357 1379 0.98 13 14 2e-06 0.00013 21.9 3.8 1 23 1385 1407 1385 1407 0.99 14 14 0.061 3.8 7.8 6.8 1 23 1413 1435 1413 1436 0.95
Sequence Information
- Coding Sequence
- ATGGACACATTAATTCAGTGTCCAGTATGCGAACTGTTTCTAAACACTGGCATGTCACTGTCGGATCATTTGGAGACACATCCCAAAGAGTTTGTGATAAAAGCACTAACCGATCTGTGCAGTCGTCAATATCAAAAACCAACGACAGCTAATTTTATTGTTGGCTCATTGCAAGGCGCCACGCACTTTACTCCAGCAAACAGACAGTTGCAGCGCATTCGTGGGCCtgccatatcatcttccccaccattatacaactacaatcattcgtctggcagtcatgagaatgctggaagtggttCTGCCAATTATCAACTCATCACCCAACAATCACAGAAGAATGTGATGCTTGTAAATCAAACACATGTAATGCCAAATGCTCGTCGATCACACCAACGTCAACAACAAACGCAATCGTCTTCCATAATAAATCCAATACCAATTCAAGTGGTCTCCTCCCCATATTCTACACGACAGAAGCTCATCATCCATTCTCAGACTGCCACAACTCAAGCTCCAGCACAATTGTCACTCTTCCCCACTACTCATTCCAGAGTTGGGACCATACAATCAAATGTCGTCGAAATGCCACAGATCGCACTGTCGGAATCTTCATCATTAACGACTAGTAGACGCGCAGCAGTACTACCAGTGTCCCATAAATTTCTTCCCCCACCTCCACCATATCCGATGTCACGCGTATACAACAACAGTGTGCCTCCAATTTTGACTGAATCAACGAATACTACCTCCACTTCTACAAGTACGGCGTCAAATATAAACGTTGAACGCGAATCATTTGGTGGATACTGGCCCCTTGACGAAAACAAAGAGGATTTTACTGAATACCACTGTCAATATCAGTCTAGCGAAGAATACGTTGATGCTGAGACGTTAGAAAAAGTTGAATCCGCCGATGACACGTATCCTAATAGTGATGTGGATGACTACATGTTCGATGAAGATGTTGTCAAGGAAGAACAGCAAATTAATTCGCATCAAGATTACTATGAGCCTTGTGATAATTCCAGGCGGGTTAAGGTTCTAAGTGACGTGAAGCTGGAAAATGCATCAACCCTTTTTATACCTCAAATCACTGATACGAACGATTATAGTACTGGCGACATTTCAGACGAAAATATTGATCATGAGCATAAAATTGAAGTAAAAGAAGATCGATTTATTGAAGAAAATAGTGCTGAAGAGGATGGATATAACATGCTGAGATCACCAGTGATTCAATCAGTTGGTTCCGTGATAAAAACTGACAATTCAATTATTGATGAAGAAGTCGATCGTGTGATTGATTTGGATGAGTTAATGCCTGACATTATTGAAAAATCACAACAACAAAATCGTGCTGTAACAGAAGATGGTACACATTTCAAAATTGAAGCAAACGCTATCGAGGAAGCATCTGGGAATCCTCCAAACCACGGCCAATTTAGTGTGATAAAAATGATCTCATCACAACAAACGGCTACGGCATCGACCAGCCATAGCAAACAATCATCGCCAATAGGAGAACAAACCATTCCCGTTCAACGACAGGTGGCGTACGAAGATGAAGAAGAGAAGCCCTTGGTATCTGGCGCTGTCATTTTACAAGGCAATGAAAATGATCAACAGAATGCCACAAATGAATTAGGTGCAGTCGTCTGTGATCATTCACAGATCGTCGAAAACACTAGAACATCCGATCATAAAAAAAAACTTGAAACAAAAACTTCTAAAAGTCATGGCAACACTCGTAAGCCCTACAATCGCCCACCAAAGAAGTTGGTCGTCAAGTTTATAAAACCATTTGTTCCAGGCGTGGAAAATGAAGAGGCTAATATTGTGCCGCCAGAAATTCAACAAGAAAAAAAGTGTCTTGCAGCATCGACGTCATCTTCATCGGAGGCTAAATTACCTTCATTTGAGATCAAAGATGACCACTTGGTGGTGCATCGATCTCCGATTCCAGATCTCGACGAGGACTCAAAAGACAAATGCGAAACCGCCAATGTTCACGATGACTTCCCAAATCAAGATCAGCCAATATCAGATGATGTTTCAATCGTCCAGAATCACGGAGATTCAATTGTGATGAACGACATCATAGATAAAAAAGAGACTGAACTTAGCGAAAGCCATGGGTCCACTGATAACATTGACACATTTGTAAAACAAGAAGATGCTGGTCCATCCCGACTAGTTACAAACCCAAACACCTTGCAACCAGCTGCTGGTTATATGGTTGAACATTTTGAAGTGATTGAATTCATGGATCCGAAAAATACCCCTGAAATTGCATTGAATGCAAAGGAAGAGTCGGATTCATTTGCGTCCGAAAACATAAGCAATAAACCTAATGATCCAGAAAGTGGCAGAAATGCGAGTAGTGTCGATTATGGACTCTCCTCTTACTTGGATTCGTTTTTGTATTCGACGCCGCATGCTTCACCGATGTATGTGCGTGATGTCTGGCAATCGGCTTTGTCAAGCCACGGGCAAATTGATGCTGATGGTAATTCTTACATGGATCTGGATGCGTACAAAGGAAATAGTGAGGACCGAGCTGCCTCTACTGATAGCTTAAATATTAGAACGGATGAGAAGATGCCAGCAAAGGGGGAAATCTCTGGCCAAGAGAGTAATGGTGACGGATCCTGGAGTCAACACGATACTTTGCCACGATACTCTAGTTCTTATGACACAAATGTAGCAAGAGAGAGTTGGAGCTTAAGTACATCTCATGCGACAACAATGGAGAATTCGGCTACGATTATTCCTCAATTTCCTCATATTGATCCGATGCAACCGGATATTAAACCATTTGCTAATTTGGATGCATTTGCCAAAGCTCCCGAGCAACCGACGAAAAAAGTGGCAAACAAACAATTCCACTGCCCACATTGTCCTAAGAAATTCATGACTATGCGTGGCAAGAGTGCCCATTTAATAGCCAAACATGATAAACCTGCTACGGTCACGCAATTGAGCAACGATCAAAATGCCGGCTCCTCTTCCGCCTGCTTACGGATGTCATCAGCTGGCGCTGTAATTTCTCAAACCACAATACAGCTTGAGACGCTGTTGCCCACGCCATCGTCATCATCGACAGCTACCAAGGCAATATTCTCAGCGAGAAACTTGGTGCAGGATTCGCGTGCAGTTCACCTTAGAATGAGTAAATACTTGTTTGAGGTGAACGTGAATATGCTCCTGAACAGACGTGTGCCGAAAATAGAGGACGGTACAGTGGCTGAAGAGGAAAAATTTACTAAAATTGAGTCGGGCTTCGCCTGCCTGACATGCTCCGAGAGATTCATGACTGTAAAAGCGTACAACAAACACATGGCCATTCACCCGGCTGAGTGCTACAAATGCAGCAAAACGTTCAAGAACTGGAGTAACCTGGCGTTGCATCTGAAGCGGCACCTCAACATCAAAGATTACAGTTGTTTCCACTGCGAAAAGAAGTTTGTTTTGCGGCAAAACTTGATGGAACACATGTATATCCACACGGGCGAGACACCAATTACATGTGCGTCATGTCCGAAAAAATTCCGCCGCTATTCCAACATGGTGCAGCACCGGCGCCGTCAGCATATGCAATTGAAGAACAAACAGTCGGCAAAGGATTACATTTGTCAGTGCGGTGAGGTGTTCCACACACTTTCCAAATACTTGTGGCACAAAGAGATTCACGAGAAGAAACCAAAGTGTTGTCGTTATTGTCGCGAGCGCTTTGTGCACATCAACAGTCTGCGACGTCACGTGATGTTGTCACATCCCAAAGAGTATTTGGCGGCGTCGAAAATTGATCTTGTGGCGTGTCCAATGTGCGATAAGCAGGTGCTGCAGACGCGCCTCAAATTTCACATACGAACGCACACGTTGCGCAAAATGTTTGAATGTGACATTTGCAAAAAGGAATTTAGCACCAAATGGAACTTGAAACAGCACAATTGGACGCATAAGAATCGCTCGTCTAAGCCGTTCAAATGTACACAGTGTACGAAGGCGTTTGTCCGTGAGAGTAACTACCTGGCCCATTTGAATACGCACAATGCAAAGCGTCCGTACACATGCAACTACTGCGGCTATCAGTTCGTGCTCAAGTACAACTGGTTGCGGcatacgcgcgaacacgaaaacgccaaacagtttaagtgtaacctgtgcgataaggagttccatcgcgcctactatttgacggaacatatgcgcacacactccggcgatcggccacacgtatgcttgatttgcggcaaacgatccaCCACAAAGACAAATCACAACAAACACTTGAAGATTCATCACGCCAGAGATCCAGTGACCGTTGAATCATAG
- Protein Sequence
- MDTLIQCPVCELFLNTGMSLSDHLETHPKEFVIKALTDLCSRQYQKPTTANFIVGSLQGATHFTPANRQLQRIRGPAISSSPPLYNYNHSSGSHENAGSGSANYQLITQQSQKNVMLVNQTHVMPNARRSHQRQQQTQSSSIINPIPIQVVSSPYSTRQKLIIHSQTATTQAPAQLSLFPTTHSRVGTIQSNVVEMPQIALSESSSLTTSRRAAVLPVSHKFLPPPPPYPMSRVYNNSVPPILTESTNTTSTSTSTASNINVERESFGGYWPLDENKEDFTEYHCQYQSSEEYVDAETLEKVESADDTYPNSDVDDYMFDEDVVKEEQQINSHQDYYEPCDNSRRVKVLSDVKLENASTLFIPQITDTNDYSTGDISDENIDHEHKIEVKEDRFIEENSAEEDGYNMLRSPVIQSVGSVIKTDNSIIDEEVDRVIDLDELMPDIIEKSQQQNRAVTEDGTHFKIEANAIEEASGNPPNHGQFSVIKMISSQQTATASTSHSKQSSPIGEQTIPVQRQVAYEDEEEKPLVSGAVILQGNENDQQNATNELGAVVCDHSQIVENTRTSDHKKKLETKTSKSHGNTRKPYNRPPKKLVVKFIKPFVPGVENEEANIVPPEIQQEKKCLAASTSSSSEAKLPSFEIKDDHLVVHRSPIPDLDEDSKDKCETANVHDDFPNQDQPISDDVSIVQNHGDSIVMNDIIDKKETELSESHGSTDNIDTFVKQEDAGPSRLVTNPNTLQPAAGYMVEHFEVIEFMDPKNTPEIALNAKEESDSFASENISNKPNDPESGRNASSVDYGLSSYLDSFLYSTPHASPMYVRDVWQSALSSHGQIDADGNSYMDLDAYKGNSEDRAASTDSLNIRTDEKMPAKGEISGQESNGDGSWSQHDTLPRYSSSYDTNVARESWSLSTSHATTMENSATIIPQFPHIDPMQPDIKPFANLDAFAKAPEQPTKKVANKQFHCPHCPKKFMTMRGKSAHLIAKHDKPATVTQLSNDQNAGSSSACLRMSSAGAVISQTTIQLETLLPTPSSSSTATKAIFSARNLVQDSRAVHLRMSKYLFEVNVNMLLNRRVPKIEDGTVAEEEKFTKIESGFACLTCSERFMTVKAYNKHMAIHPAECYKCSKTFKNWSNLALHLKRHLNIKDYSCFHCEKKFVLRQNLMEHMYIHTGETPITCASCPKKFRRYSNMVQHRRRQHMQLKNKQSAKDYICQCGEVFHTLSKYLWHKEIHEKKPKCCRYCRERFVHINSLRRHVMLSHPKEYLAASKIDLVACPMCDKQVLQTRLKFHIRTHTLRKMFECDICKKEFSTKWNLKQHNWTHKNRSSKPFKCTQCTKAFVRESNYLAHLNTHNAKRPYTCNYCGYQFVLKYNWLRHTREHENAKQFKCNLCDKEFHRAYYLTEHMRTHSGDRPHVCLICGKRSTTKTNHNKHLKIHHARDPVTVES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -