Sfus006615.1
Basic Information
- Insect
- Sylvicola fuscatus
- Gene Symbol
- -
- Assembly
- GCA_026546915.1
- Location
- JANSTS010008924.1:1340-3738[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.029 1.8 8.9 3.7 2 22 24 44 23 44 0.92 2 17 0.0051 0.32 11.2 3.0 1 23 59 81 59 81 0.96 3 17 0.063 4 7.8 0.5 1 23 87 110 87 110 0.90 4 17 0.0043 0.27 11.5 5.1 1 23 113 137 113 137 0.96 5 17 0.00042 0.026 14.7 0.3 2 20 146 164 145 166 0.93 6 17 0.0027 0.17 12.1 3.8 1 23 174 196 174 196 0.98 7 17 0.0061 0.38 11.0 4.2 3 21 204 222 202 224 0.92 8 17 3e-06 0.00019 21.4 0.4 1 23 230 252 230 252 0.96 9 17 0.0067 0.42 10.9 3.4 1 23 482 505 482 505 0.94 10 17 0.0038 0.24 11.6 1.2 1 23 515 537 515 537 0.93 11 17 0.63 40 4.6 2.3 1 23 545 568 545 568 0.95 12 17 5.2e-06 0.00033 20.6 2.1 2 23 573 595 572 595 0.95 13 17 0.00052 0.033 14.3 0.2 1 21 605 625 605 626 0.94 14 17 0.0014 0.085 13.0 3.6 1 23 634 656 634 656 0.98 15 17 0.0031 0.2 11.9 3.9 3 21 664 682 662 684 0.91 16 17 4.9e-06 0.00031 20.7 1.3 1 23 690 712 690 712 0.99 17 17 0.86 54 4.2 2.2 1 21 718 738 718 739 0.91
Sequence Information
- Coding Sequence
- ATGTTTAAATCGACTGAATTAGAAAATAGCGACTCTGACTGGGAGTCGTCCAACAATCTTAAAGACATAACCTGTAAATACTGTGATGAATGCTTCGAAACGCCTCAACTCCGCTGTAAACATGAGAAAACGTGCGACTCCAATAACGGGATTACTAAAGACCCCTCGCACACATTTGCTTGCACTGAATGCAGTCACACATTCAAGTTTCGCACTGGATTGGACAGACACACAGCCCGGCACCAGTTCCCTGGCGGATTTGCGTGCACCCGCTGCGATGAGAAATTCACTTCCATACAAGCGAGAACGGCACATCGTGAGCAACAGCACAAGATCTACAAGTGCAAACTGTGTGATAACAAGAGATTTAAGACGCACAACTCCTACCAACGTCACATCAAAGCTCAACATGAAGGCAAGGAGCGCGAGTTTTGTGTGTGTACAATTTGTGGCGCCCAATTTAACAGCCAGGCCCAACTACGTAACCACACGGTGTCCAGTTGTGGCACAATTAAGACGCACaagtgtgatgagtgcgactctaaatttatgactccacacactttgatgacacacaaaatgatacatcgaggtgagaagcagcacctctgcaattactgcggcaagagtttcttgagtaagggacaattgaaggtacatgagcgctgtcatactggcgagaaaccgtttcagtgcaacatttgcggtaaagccttttcgtatcgggaaagtttggtgacacattcgtctgtgcacacgggaattaagccgtttctttgtcagtgctgtggcagtacgttcTCTTGTGTGGGCAATTTGATTAAGCATCGAAAAGGGCGGCCAGACAATTGTGGTCTGGCTCAATTTGATGGCATTCGCAAGATTGCACCACGCGCTAGTGCCAAACTTAAAGCAAAAAATGGATCTGAAAAAGGTGCAAATGCGACTGTTTGTGCTTTCAAAAAGAATGATGACGTTGTCAAACCAATAGAAAGACAATCACCCGAAGTTTCTGTACTTAAAACTCCAACTGACCAAATTAAGGATGATGAACCGCCTAGCATATCTTACGACGTCGAAATTCAATCAGAGCCAGTAAATTATAAGGCTGAAGCGCCTAAAATAATCAATATTAAGCAAGAAGATACGCAGGCTCCACTCATACAAATTTTATGCCTACATGACACCATTCTGTATGAGGATGAAGCAATCGGTCTTAAATCAAAATCTACTGAATATCCACATATCGAAAATGTTCAAAGAGAAGAACCCAAAAAACCTAGAGAAACTAATTTAGAAGTTCCAGAAATATCAAAATTGGAGCTTAAGATTGATGAAAGTCTTGAAAAGTCAAATGAAAGTAAATTAATTAAACAAGAAAGTTTGGATGCTGTAGATTCTGAAAATCCTGAACAGAATCGAATCCCGATAGAAAAAGTTATATACGAATGCAAAAATTGCCCAAAGAAATACACTTCCCGAAAACCCTATTATAAACATCTTCACGAGGTGCATAACACCAGAAAAGTCGATCACTGCCGACACTCTTGCCGCATCTGCGAGAAACCCTACCGCAATTTGGCCTCCATGAAGAAGCACGAACTGGATCATGGACCTGACGGACTTCTGATCCACAAGTGCAACTGCTGTCGTCTTTACTTTGCCACACCGTCCGACGCCGAGTCTCATCAGTTGAGTGCCCATTTGGACAAGTTGCactgcaaagtctgcaacaaggtgtttacagatcccgacagtctgaactcgcacacgcgatacaagcacaagggcctgccgcccaagaagtacacttttgtgtgccagagctgtggccgcaaatttaacacgaaggtggcgttgtcggatcacgaacgatcgcgctgcggccagcagcccatctacgagtgcagcgcctgcaacaagtgctaccacagtgccggctcgctgaagacccaccagacggtgcacacgggtgaactgccgcatttgtgtaagttttgtggcaaagcgtttcgcacacagggacaggtgaaggtgcacgagcgctgccataatggcgataagccattcaagtgccaggattgtgacaaacaattcgctTATCGGGAGAGTTTGCTAACTCATCTGTCGACTCATAATGGACTGAAGCGGTTTCTGTGTCGCGTTTGCAACAGCCGGTTCTCCTGCATTTCTAACCTGAAGGCGCATCGAAAGAGCAACCAAAACACCTGTGGACAGCAACCGACATTTACTAAGCAGGTTGGCGCTGAGGGAAAAATTGGTAAGGATATTTCCTTTATTACACGCAAACATTTTTTCTTGAATTGCTGTAACTAG
- Protein Sequence
- MFKSTELENSDSDWESSNNLKDITCKYCDECFETPQLRCKHEKTCDSNNGITKDPSHTFACTECSHTFKFRTGLDRHTARHQFPGGFACTRCDEKFTSIQARTAHREQQHKIYKCKLCDNKRFKTHNSYQRHIKAQHEGKEREFCVCTICGAQFNSQAQLRNHTVSSCGTIKTHKCDECDSKFMTPHTLMTHKMIHRGEKQHLCNYCGKSFLSKGQLKVHERCHTGEKPFQCNICGKAFSYRESLVTHSSVHTGIKPFLCQCCGSTFSCVGNLIKHRKGRPDNCGLAQFDGIRKIAPRASAKLKAKNGSEKGANATVCAFKKNDDVVKPIERQSPEVSVLKTPTDQIKDDEPPSISYDVEIQSEPVNYKAEAPKIINIKQEDTQAPLIQILCLHDTILYEDEAIGLKSKSTEYPHIENVQREEPKKPRETNLEVPEISKLELKIDESLEKSNESKLIKQESLDAVDSENPEQNRIPIEKVIYECKNCPKKYTSRKPYYKHLHEVHNTRKVDHCRHSCRICEKPYRNLASMKKHELDHGPDGLLIHKCNCCRLYFATPSDAESHQLSAHLDKLHCKVCNKVFTDPDSLNSHTRYKHKGLPPKKYTFVCQSCGRKFNTKVALSDHERSRCGQQPIYECSACNKCYHSAGSLKTHQTVHTGELPHLCKFCGKAFRTQGQVKVHERCHNGDKPFKCQDCDKQFAYRESLLTHLSTHNGLKRFLCRVCNSRFSCISNLKAHRKSNQNTCGQQPTFTKQVGAEGKIGKDISFITRKHFFLNCCN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -