Sfus001944.1
Basic Information
- Insect
- Sylvicola fuscatus
- Gene Symbol
- -
- Assembly
- GCA_026546915.1
- Location
- JANSTS010006873.1:4877-6855[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 7.6e-06 0.00048 20.1 1.5 2 23 181 202 180 202 0.96 2 12 0.011 0.69 10.2 0.7 2 19 209 226 209 227 0.96 3 12 0.012 0.74 10.1 0.2 3 23 241 261 239 261 0.96 4 12 0.056 3.5 7.9 1.0 1 21 273 293 273 294 0.92 5 12 0.001 0.065 13.4 3.2 1 23 300 322 300 322 0.98 6 12 0.0001 0.0062 16.6 2.5 3 23 329 349 327 349 0.92 7 12 0.0025 0.16 12.2 1.1 2 23 355 377 354 377 0.97 8 12 0.035 2.2 8.6 0.4 3 23 385 405 384 405 0.96 9 12 0.076 4.8 7.5 1.5 1 20 411 430 411 432 0.92 10 12 0.00055 0.034 14.3 0.0 2 23 452 474 451 474 0.94 11 12 1.7e-06 0.00011 22.2 2.0 2 23 492 513 491 513 0.97 12 12 2.5e-07 1.5e-05 24.8 2.0 1 23 519 541 519 541 0.95
Sequence Information
- Coding Sequence
- ATGGAAGAAAATCGGATAACAAAACGGATGCTTCAAATGGACATGACCCAAACATGTCGAGCTTGTCTGGGACATTTGCGACACCAGAAAGACTACCTGTTCTCGACAAGCACATATCACCTCTTCAAAGAATGCACCCACCAAAAGCCGGTGGACGAGACACATTTTCCGAAGTTCCTGTGCGCTAAATGCAAATCCTTTTGCACTGCCTGGTCAATATTCAAGGATAATTGCATAGAAAATGAAAAATTACTTCGTGAGATTGTCAAAATTCGATATCCAACAGTGGATAACATGTCAGCAGTTCCACTTCAACCAAAGTCACACAAAGACGAAACTTCTACTATATTATCTCAATTGGAAGTCAGTGACCCGATTGAGAGTGATCCTCTTGAGCCTTGTGATAATGAAAATAACGATGAAGAAGAATCAGACGATTCCGGAAGTGATAGTGAAGATGAAGAAGAAATACCATCCAAAACCAGACGGGGAGTAACTCAAGAGCCAAAGAAACGTGGACGCAAGCCAACTCTAGGAACAACATGCAAGCAATGTGGATTGTCGTTTAAGCGTCCAAATTATTTAAGGAAACATGAGCTGTCTCATGTCATTGTTAAGGATCCACGGTGTCTGAAATGTGACCGTTCATTCCCGAGTGCCACTGCTTTAGAGGAACACTGCGTGGATGAGCACGAAATGGATATTTTGAAGAACTTTGGCTGCATGTTTTGTGAAGGTATGTTTGCCACGTATGGCATGCTAATCAAACACATGTACACGCACGAACAGGCGCTCGAAGTGCTGCCCAACAACAAGTACCAATGTCCAAAATGCGACTGCACCAAAACTTCGGATGTGCTGCTTCAAAAGCACATCGAAAAGTGCATTCCATTCAGCCATACTTGCACCTCGTGTGGCCACATCGCCAAAAACGCCACCCTCCTTAAGACGCACATGCGTTCCCATAATATCCGCGAGCATCTCTGCAGCACTTGCGGCAAAGCGTTCAAGACAAAGAACCTTCTGCGCAATCACTTCGCCCTGCATGTCGGCAAGACGGATAAGTGTGACATCTGCCATCAGTATTTCTCGGGCCCATTACGCCTCAAATATCACATTCGGCGGGTGCATGAGGATACTAAACGGATGTTGTGCCACTTTTGTTCGGTTGACTTTAAGGATCCAATCGCATTTCGGGCGCACGTTTCCTTGCACGAAAATCCCAATTCCTTTCACTGCGAAAAGTGTCAGACAGTCTTTCAGGTGCAACTGCAGTTCCAGAATCACGTGTCCAAGTGCAAAGGACGGAAGCGGCCCAGCGTCGCTAAGGTGCGAGTGGAACTGGATCGGGTGCGATGTTCAGTCTGCGGTGAGGGATTCCCAACGTTGCCGGCACTGCGAATTCATCTCATGGAGATGCACGCCAAGGATGGCGTTGACGTTGAGGCCGCCATTGAAAGCGTTAAGACGATTAAATGCGACTTATGTGATAAGCGATTTGCTTCGCACAAGAATCTCAAGCTTCACATGAACGTCCATTCCAATGTGAAGCCATTTGAGTGCCATTACTGTGACAAGACGTTTCGGGATGCTACCAATTTAAGATATCACATGGTGGCGCATGAAAAAAAGGAGGAGTCGTACTGCAACAGTGGAGCTGTTGAGCAGTATGGTAGTTATCCAGTAAATGGACAGTATCAATAA
- Protein Sequence
- MEENRITKRMLQMDMTQTCRACLGHLRHQKDYLFSTSTYHLFKECTHQKPVDETHFPKFLCAKCKSFCTAWSIFKDNCIENEKLLREIVKIRYPTVDNMSAVPLQPKSHKDETSTILSQLEVSDPIESDPLEPCDNENNDEEESDDSGSDSEDEEEIPSKTRRGVTQEPKKRGRKPTLGTTCKQCGLSFKRPNYLRKHELSHVIVKDPRCLKCDRSFPSATALEEHCVDEHEMDILKNFGCMFCEGMFATYGMLIKHMYTHEQALEVLPNNKYQCPKCDCTKTSDVLLQKHIEKCIPFSHTCTSCGHIAKNATLLKTHMRSHNIREHLCSTCGKAFKTKNLLRNHFALHVGKTDKCDICHQYFSGPLRLKYHIRRVHEDTKRMLCHFCSVDFKDPIAFRAHVSLHENPNSFHCEKCQTVFQVQLQFQNHVSKCKGRKRPSVAKVRVELDRVRCSVCGEGFPTLPALRIHLMEMHAKDGVDVEAAIESVKTIKCDLCDKRFASHKNLKLHMNVHSNVKPFECHYCDKTFRDATNLRYHMVAHEKKEESYCNSGAVEQYGSYPVNGQYQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -