Basic Information

Insect: Sylvicola fuscatus
Gene Symbol: L
Assembly: GCA_026546915.1
Location: JANSTS010009550.1:33229-41578[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 5.2e-05 0.0033 17.5 3.5 1 23 102 124 102 124 0.97

2 19 0.35 22 5.5 5.8 1 23 130 152 130 152 0.98

3 19 1.8e-07 1.1e-05 25.2 3.1 1 23 158 180 158 180 0.99

4 19 1.5e-05 0.00094 19.2 0.2 1 23 186 208 186 208 0.98

5 19 2.8 1.7e+02 2.6 0.6 3 23 265 287 264 287 0.83

6 19 0.0047 0.3 11.3 1.6 2 23 325 347 324 347 0.96

7 19 0.025 1.5 9.1 0.6 1 23 459 481 459 481 0.95

8 19 0.00027 0.017 15.2 1.1 1 23 489 511 489 511 0.96

9 19 0.00018 0.011 15.8 1.5 1 23 519 543 519 543 0.92

10 19 0.00052 0.032 14.4 0.3 1 23 548 571 548 571 0.93

11 19 0.62 39 4.7 1.8 1 23 578 601 578 601 0.98

12 19 0.0028 0.18 12.0 1.8 1 23 633 655 633 656 0.96

13 19 1.2 75 3.8 0.2 1 23 780 804 780 804 0.90

14 19 0.00044 0.028 14.6 0.8 2 23 813 835 812 835 0.95

15 19 0.0047 0.29 11.3 0.2 1 23 841 863 841 863 0.97

16 19 0.18 11 6.3 0.4 2 23 871 892 870 892 0.94

17 19 0.00027 0.017 15.2 1.1 1 23 975 997 975 997 0.97

18 19 0.1 6.5 7.1 0.0 1 20 1007 1026 1007 1029 0.95

19 19 0.072 4.5 7.6 3.8 1 23 1036 1058 1036 1058 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	5.2e-05	0.0033	17.5	3.5	1	23	102	124	102	124	0.97
2	19	0.35	22	5.5	5.8	1	23	130	152	130	152	0.98
3	19	1.8e-07	1.1e-05	25.2	3.1	1	23	158	180	158	180	0.99
4	19	1.5e-05	0.00094	19.2	0.2	1	23	186	208	186	208	0.98
5	19	2.8	1.7e+02	2.6	0.6	3	23	265	287	264	287	0.83
6	19	0.0047	0.3	11.3	1.6	2	23	325	347	324	347	0.96
7	19	0.025	1.5	9.1	0.6	1	23	459	481	459	481	0.95
8	19	0.00027	0.017	15.2	1.1	1	23	489	511	489	511	0.96
9	19	0.00018	0.011	15.8	1.5	1	23	519	543	519	543	0.92
10	19	0.00052	0.032	14.4	0.3	1	23	548	571	548	571	0.93
11	19	0.62	39	4.7	1.8	1	23	578	601	578	601	0.98
12	19	0.0028	0.18	12.0	1.8	1	23	633	655	633	656	0.96
13	19	1.2	75	3.8	0.2	1	23	780	804	780	804	0.90
14	19	0.00044	0.028	14.6	0.8	2	23	813	835	812	835	0.95
15	19	0.0047	0.29	11.3	0.2	1	23	841	863	841	863	0.97
16	19	0.18	11	6.3	0.4	2	23	871	892	870	892	0.94
17	19	0.00027	0.017	15.2	1.1	1	23	975	997	975	997	0.97
18	19	0.1	6.5	7.1	0.0	1	20	1007	1026	1007	1029	0.95
19	19	0.072	4.5	7.6	3.8	1	23	1036	1058	1036	1058	0.94

Sequence Information

Coding Sequence: ATGCCTCTTAAAATGATGTATCGAGGGCCAAGCTCCCGCCTTGAGACTCTCATCGAGAAAATTCAACAAACCAAGGAAATTACTCAAGATTTGTACTCAACTCACACCTCGTCCACGTATTCACCGTCGCTGTCGGAGGGGGCTGCCACCCCCAATTCAGTAAGCATCAATGCTGAGAGTACTCGCTTGAATGGCGACGATGGCGATGAGATTGGCGGCATTTCGAAGAAGGTGAAAAAGGACGAGCACAAGGCTGGTGGCGAGCATGTGGGCGGTGGAATCCGGAATGGCGGCGATGGTTCGTACCATTGCCAGTTTTGTGATAAGTCATTTCCAAGACTTGGATACCTGAAGAAACATGAACAGAGTCATGCTGAACAGATGCCGTTCAAATGTGATTACTGTGCGCGTCTCTTCAAGCATAAGAGGTCCAGGGATCGCCACACGAAGCTGCACACGGGAGACAGGAGATATCGATGTCCCCATTGCGAGGCGGCCTTTTCAAGAAGTGATCACCTGAAAATCCACATGAAAACCCACGACAACCAGAAACCCTTCCAATGTACCGTCTGCAATCGCGGCTACAACACAGCGGCGGCACTCACCTCGCACATGCAAAACCACAAGAAAAAGGCGGGCATCCTTGGTAGCGGCGGCATCGGTAACATAGCCGGCCACGGGCCAATCATGAACTACAGTCCACGTTCATCCAGCTCCAGCTCCAGTATTAGCAGCCTGCAGAAGCGAAAGTACGCCACTTCAATCGAGGCTAACGGCATGATGAGTCCCACTTGCATGTATTGCACCAAATCGGACTTTCAATCCATGGAACAACTCCAGACGCACATTCAAGTGATGCATGGAGCCGTTCTACATGAGGTAATTTCACTGCGAACTTCCCAAATGAAGACAAACTTAATTGACATCCAATTGCAGAACTTCTCTCGTCTGTCACTGCCCTCCATTCCCCTATCCTGTGAATTCTGCACCATGAAATTCCCGTCAATGCAGGCGCTGTTCCACCACCTTCGCACCATTCACATTGACCGCATGAACAACGCCAACTCCTACGTCAACTATTTCAACAAATTCGCATCCTACTACTCCTCAAGTCCTGTGCCGCCATTGTCCGACGGCCTGTACGACAAACGGAAACGATTGAACGATGAAGTCAGTCCAACGCCGCCGGGCGATGTAAAAACACTCGAAGATGGCAAATCACCAGTGCCGGATACATTGAAAAGCGTCAAGCTTGAGGAACAGGACAGCCCAACCGATTTGACGACCAAAAAGGATGGCAACGAGTCACCCAAGGCCACCACCACCCCACCTAACCAATCGCCAGTGCAACAGCCGACCGTCGCCGCGGGCACTTTTCTGTGCAACCAATGCAATGCAGCGCTGTCGGACTTTGACTCGTTTCGATTGCATCTGAAGAGTCATCTGTCGCAGGAGATGGAGAGCTTCATCTGTCAGTACTGCGGCAGTACGTTCGCCAACCAGCACGATTTCGAAAGCCACGTCTTGCTGCACTTCCTCATCACCAATTCCGAGCACATATGTCCGCACAACTGCAACAAATCCTTCGCCAAGGCGGAAGATCTACAAAAGCATCTACTAGACATGCACACACAAACGCTGTACAAATGTGACATATGTCACGAAATGTTTGACACAAAAGTCGCTATGCAAGTGCACTTTGCCGTCGCGCATGCCAATGAGGTGAAAACGTACAGGTGCTCAGCATGCATGGAGATCTTTCGCAACGAGAAAGACTTCAAGTTTCACATTAGAACACGCCACGCCATACCTGGCACCAttcagtgtctgttctgtcggacggtgtgcgcctccgagctggagatgcacttccatttggcggcgcacgccaaacagtacaagtgtcccgcgtgtccggagtcatttcatgtggaATTCCTGTTGGATCGTCACATGCAGAATCATCACGCGCAGAAGGACAACCAGCATCACTACTTGTCGCCCAAGTCGACCAACAACAATAACTCAACGTTTGACTACCACCACATGGCCAACAACAAGAATTACTTTGGATTCTCGAAGCCTTCATTTAATCCCATGAAAGTGAATGCGCCCAATTATGACGCTCTGAAGCATCCGCATCAGGCGTTCAGAGAGGATCAAGTCGCCCCAAAGCCAAACATGCTGGGCATCTACAGCACTGAATTGGCTCTGCAGGCAGCCAAATCCGGCTATTTTGATCAGCCGAATCCCGTGGCGACCGCACCTCAGCCAGTTGCCTTTGATGTGCCGAAAATCGCACCAACTGATCCAGAGAAACGCGTGGAATTGAAGCGCTTCAGCTGCGGCATTTGCGAGAAACAAGACTTTACATCCGAGGCTGAGGTAAATACGCACAAGAAAATCGTGCACAACTTCAAGACAGGCGTCAGCCTACGTTGTGCCTACTGCAATTCCAACTTCCGGTCACGCAACGAACTCGAGAATCACATGAAGGCATCCCACAATCTGAGTGGCAAGCACAAATGTCTGATTTGCGATGAAATTTTCCCATCGCAAACTGTGTTGGCCGAGCACAAGCTGGTCCACTCCAAGGTGGGCGCCTCTGGAAAGTGTTCCCACTGCTCAGCTTCCCTGCCCGATACGGCCAGCTTTAAATCGCACATTGGCGAACACAATGGCACCGACTTTCCCGTGCAGTGCATTTGCTGTCGCCAGACGTTGCATTCCGACTATGAAATTGGATTGCATGCAAAATTCCACACAAAAGTCGATCACATCAGTGAAAATGCGTGCGCCATGTGCCTAGAAGTGCTGCCAGCCAACGTGGAACGGAAACTGTGCGAAAAGTGCCTCAAGAAGACTGCCTTCTCAGCGCTTAGCCAGCAATCAGTCGGCCCAGTGGACCATCGAAGTGCGTCCTATCAGTGCAACTTGTGCACAAAAGCCTGCTCGTCGGCGTCTAGGCTGCAGGAGCATCTCATTGAGCATTCGTTCCAAGGATGTGAGGAACGTGGCTACATTTGCTATGTTTGTTCAGCTACTTTTACGGCACCACCGGCCCTGTTGGCCCATATGCCGGAACATGGTGCTGCCCTCAAGCCGTACGACTGTCATCTGTGCACTTTGAAGTTCTACTTCAGGAGTGAGTTGGATCATCATCTGGTCGAGCATGATAGTGGTGCCGTTAGTGCCCAAGTCCAACATGATGATCGTTCGGATAAAATCGAAGATGTTGTCGTGAAGAATGAGGTGGCTGAGGTGGAGGATCGCCATGACGACGATGAGGAGGAATACATCGAGGTGGAGAAACTGTCCGAGATGAATCAGTCGGACCACATCAAGGACGAGGAACATTCCAAATAG
Protein Sequence: MPLKMMYRGPSSRLETLIEKIQQTKEITQDLYSTHTSSTYSPSLSEGAATPNSVSINAESTRLNGDDGDEIGGISKKVKKDEHKAGGEHVGGGIRNGGDGSYHCQFCDKSFPRLGYLKKHEQSHAEQMPFKCDYCARLFKHKRSRDRHTKLHTGDRRYRCPHCEAAFSRSDHLKIHMKTHDNQKPFQCTVCNRGYNTAAALTSHMQNHKKKAGILGSGGIGNIAGHGPIMNYSPRSSSSSSSISSLQKRKYATSIEANGMMSPTCMYCTKSDFQSMEQLQTHIQVMHGAVLHEVISLRTSQMKTNLIDIQLQNFSRLSLPSIPLSCEFCTMKFPSMQALFHHLRTIHIDRMNNANSYVNYFNKFASYYSSSPVPPLSDGLYDKRKRLNDEVSPTPPGDVKTLEDGKSPVPDTLKSVKLEEQDSPTDLTTKKDGNESPKATTTPPNQSPVQQPTVAAGTFLCNQCNAALSDFDSFRLHLKSHLSQEMESFICQYCGSTFANQHDFESHVLLHFLITNSEHICPHNCNKSFAKAEDLQKHLLDMHTQTLYKCDICHEMFDTKVAMQVHFAVAHANEVKTYRCSACMEIFRNEKDFKFHIRTRHAIPGTIQCLFCRTVCASELEMHFHLAAHAKQYKCPACPESFHVEFLLDRHMQNHHAQKDNQHHYLSPKSTNNNNSTFDYHHMANNKNYFGFSKPSFNPMKVNAPNYDALKHPHQAFREDQVAPKPNMLGIYSTELALQAAKSGYFDQPNPVATAPQPVAFDVPKIAPTDPEKRVELKRFSCGICEKQDFTSEAEVNTHKKIVHNFKTGVSLRCAYCNSNFRSRNELENHMKASHNLSGKHKCLICDEIFPSQTVLAEHKLVHSKVGASGKCSHCSASLPDTASFKSHIGEHNGTDFPVQCICCRQTLHSDYEIGLHAKFHTKVDHISENACAMCLEVLPANVERKLCEKCLKKTAFSALSQQSVGPVDHRSASYQCNLCTKACSSASRLQEHLIEHSFQGCEERGYICYVCSATFTAPPALLAHMPEHGAALKPYDCHLCTLKFYFRSELDHHLVEHDSGAVSAQVQHDDRSDKIEDVVVKNEVAEVEDRHDDDEEEYIEVEKLSEMNQSDHIKDEEHSK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -