Basic Information

Insect: Sylvicola fuscatus
Gene Symbol: prg
Assembly: GCA_026546915.1
Location: JANSTS010000828.1:30273-32127[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.16 10 6.5 0.8 3 23 161 182 159 182 0.86

2 10 0.42 26 5.2 4.7 1 23 188 211 188 211 0.95

3 10 7.5e-05 0.0047 17.0 2.0 1 19 217 235 217 239 0.93

4 10 8.6e-08 5.4e-06 26.2 3.4 1 23 245 267 245 267 0.98

5 10 2.5e-06 0.00016 21.6 2.0 1 23 273 295 273 295 0.97

6 10 5.9e-05 0.0037 17.3 3.1 1 23 301 323 301 323 0.99

7 10 1.5e-06 9.7e-05 22.3 0.4 1 23 413 435 413 435 0.98

8 10 4.1e-05 0.0025 17.8 1.3 1 23 441 463 441 463 0.94

9 10 4e-07 2.5e-05 24.1 1.4 1 23 469 491 469 491 0.98

10 10 4.5e-05 0.0028 17.7 0.4 3 23 499 519 497 519 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.16	10	6.5	0.8	3	23	161	182	159	182	0.86
2	10	0.42	26	5.2	4.7	1	23	188	211	188	211	0.95
3	10	7.5e-05	0.0047	17.0	2.0	1	19	217	235	217	239	0.93
4	10	8.6e-08	5.4e-06	26.2	3.4	1	23	245	267	245	267	0.98
5	10	2.5e-06	0.00016	21.6	2.0	1	23	273	295	273	295	0.97
6	10	5.9e-05	0.0037	17.3	3.1	1	23	301	323	301	323	0.99
7	10	1.5e-06	9.7e-05	22.3	0.4	1	23	413	435	413	435	0.98
8	10	4.1e-05	0.0025	17.8	1.3	1	23	441	463	441	463	0.94
9	10	4e-07	2.5e-05	24.1	1.4	1	23	469	491	469	491	0.98
10	10	4.5e-05	0.0028	17.7	0.4	3	23	499	519	497	519	0.98

Sequence Information

Coding Sequence: ATGTGTCGCCTATGTCTGCGGCACGAGGAATTTACCATCAATGTTGTCGAATATAACAAACTGATACACGATAAGAGTCGTCGGCCGCTGGAAGAAAGAATTTTCGACATGTTTCAGGTTAAAATCCAGCCGTCAGATTCACTTCCCAAGAACATTTGCATTGAGTGTCTGCATTATACTGAGAATTATTGGGAATTTCGATTAGAAGTAGCTAAATGTGAGGAGCGCCTACAAAGTTATTTACCTGTTAAGAGCACATCGCACGTCCCATCGGGCAAATTTAAATCATTTGAGAACAGCATTCATGGCGGTGGTCATGACCCTGAAGAAGATAGCGTTGTTATGGTAATCGATCCCACCAAAGACTATGACAGCACTGAAGAAAGCGATAGCGCTCAGTCAGATGGCGAAAACGAATCAATGCCACTGATTAGTGCTATGAGCAATGAGACTGGCGACTCTTTGAAGAATGTAATTTTCTGCCAGTATTGTGACATGGCATTTATCACAAACACCGACTGCCTAAACCACGAGGAATCTGATCACAATAGGATGACACCGCACTCGTGTAATTACTGTTCGTTTGCTTGTGCCAGCCGCAACACAATTATCGCCCACATCAAGGAGTGccacgacgcggacaaaccgtatgtgtgcgcccgttgtggcaaacgattcggccgacgatcagacctgaaaaaacattgtgttgttcatacaggcattcggccgtttcattgtccagtgtgcaacaaaaatttctcccgcaacaccaatctgacgaaacatttgcgaattcatagcggcttgaagcctcacgtgtgcCAGAAATGTCCTCGCTCGTTCACCACCAAGGGCGATCTGTTCCGTCACGAGCAGGTCCATTCCGAGGTCAAACCATTTCAGTGCATGCAGTGCGCGGCGTCGTTTTCACGCAAAGACAAGCTACAGCATCACGAGAGGACCCATCTCAAACGGGAACAACTAATGCAGCAGCAGCAAATACTGCCGGGTGGCACCAGCATGTTGAATGCATCGGCGCATTTTGATCCCGAGGACATTTGCATAGCACTCGATCCGTTTACCGGTATGGACCATCACGTAGATGACCAGAAGCAAATGCCCGACATGGATGAGAAGAAGGGGGGCTACCATGTTCCTGATCACATTAGCGAATTGGCGTATCGACCACATGTGACTGGAGACATAAAAGGCCAGGATGAGATGGAGAAAACTTTCATGTGCGACATTTGTCCTAGGAGATTTGGCACCTCATCCGCACTACAGAATcaccgaaacatgcaccttggaatacggcgacacatttgcactgtatgcaatcgtgccttttctaggaaacgcgaactggaccgtcacactgtcattcacaccggcctgaagccatacgagtgcaatgtgtgcaacaaacgtttcggcagaaaggataagctgacacgccatgaacgaattcatttggaggaaggcgtatttggctgcaatcagtgtaatgcaaagttttcgcgacaagaaagtttaatacttcacatgggaacacatCTAAGTCCCGAATTAGAGATAATTCCGCTTGATAGAGATGACAACAAAATGCCGACGACAAACGAAGGAACCAATCCTATGATGATGCTGAGCTAG
Protein Sequence: MCRLCLRHEEFTINVVEYNKLIHDKSRRPLEERIFDMFQVKIQPSDSLPKNICIECLHYTENYWEFRLEVAKCEERLQSYLPVKSTSHVPSGKFKSFENSIHGGGHDPEEDSVVMVIDPTKDYDSTEESDSAQSDGENESMPLISAMSNETGDSLKNVIFCQYCDMAFITNTDCLNHEESDHNRMTPHSCNYCSFACASRNTIIAHIKECHDADKPYVCARCGKRFGRRSDLKKHCVVHTGIRPFHCPVCNKNFSRNTNLTKHLRIHSGLKPHVCQKCPRSFTTKGDLFRHEQVHSEVKPFQCMQCAASFSRKDKLQHHERTHLKREQLMQQQQILPGGTSMLNASAHFDPEDICIALDPFTGMDHHVDDQKQMPDMDEKKGGYHVPDHISELAYRPHVTGDIKGQDEMEKTFMCDICPRRFGTSSALQNHRNMHLGIRRHICTVCNRAFSRKRELDRHTVIHTGLKPYECNVCNKRFGRKDKLTRHERIHLEEGVFGCNQCNAKFSRQESLILHMGTHLSPELEIIPLDRDDNKMPTTNEGTNPMMMLS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -