Sfus013847.1
Basic Information
- Insect
- Sylvicola fuscatus
- Gene Symbol
- -
- Assembly
- GCA_026546915.1
- Location
- JANSTS010006805.1:4497-7242[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 2.7 1.7e+02 2.7 0.0 1 17 118 134 118 135 0.90 2 13 0.0064 0.4 10.9 0.3 2 23 145 166 145 166 0.98 3 13 0.0024 0.15 12.2 2.5 1 23 317 339 317 339 0.97 4 13 0.00017 0.01 15.9 4.5 2 23 462 483 462 484 0.94 5 13 4.9e-05 0.0031 17.6 0.1 2 23 494 516 493 516 0.95 6 13 0.00074 0.046 13.9 4.2 1 23 524 546 524 546 0.98 7 13 0.0005 0.031 14.4 1.3 2 23 563 584 562 584 0.97 8 13 2.1e-05 0.0013 18.7 1.8 1 23 589 611 589 611 0.97 9 13 1.3e-05 0.00081 19.4 4.6 3 23 619 639 617 639 0.96 10 13 8.7e-06 0.00055 19.9 2.1 1 23 645 667 645 667 0.98 11 13 0.00011 0.0067 16.5 5.0 2 23 674 695 674 695 0.98 12 13 2.4e-06 0.00015 21.7 2.6 1 23 701 724 701 724 0.97 13 13 2.9e-05 0.0018 18.3 1.2 1 23 729 752 729 752 0.97
Sequence Information
- Coding Sequence
- ATGGCGAGCGGCGTAGATATTTCCAGCATTTGTGTTTGCTGCATGAAAAACGACGGAGACAACATGGACTCGGTATTCACTGAATTAACATTTGTCGATGCTCACATGCCGTCTTGTTCGTACTTGCAACTTATTTACGATTGTACACAACTAAAGATTGCAACTGATGTTCAGAACCAGATGAAAATATGCAATGACTGCATTTACTCGCTGACAAGGGCTTACCTCTTCCGGCTGCAAGTGCACCAGTCTAGCAAACAAATTTCCTTAATTTTGGGTTCAGACGATTGGAAGGATCCCCAACAAAACGGTTTCAATGAGGTGTCCTCGCAAACAGAACACGTTACCATTTATCCATGCGAGTTGTGTGATAACATTTACTATGATGCTAGAACGCTAAAGATTAAATATTCTGGTTTTGCAAGAAAGAATACTTGCCCTATTTGTAGCAAATTGCTGCCGAGAAGAGGTCGTTTGGAAAGTCATTTGAAAATGCACAAGGAAGATATAAAGTTTTTGGGAAATCTTGAAGATATGCCATACAAAGATTGCCTGCTCAAAATATTAAATGAAACTTCTGACACCGACGAAATTGATGATCTTAACATAGATGACTTATCTCCTGATGACGAGAGCTTGTCTACAATTAGTGAATATGATTTGTTTGAGGAAGAACACAAAGCAACCGATTCAGCTTACTTAGAAATTGAGGAGATTGGAGAACTTGGAAGCAAGGATGATTTCGTTACCGAAGTTGAGTATCTTGATAACGAATTGGAGGAGGAGGAGGAGGCGGAAGCGGAGGACCAAATTGAAGAACAATTCGAAATAATTGAAGAAGATTTTAAAGGCACTGGACCAATTTCCTACAAATGTGAATCATGTACGACGGCAAACGCTATGTTTAGTGGAATCCATAAAAATATCATTCACAATGACTTCGAGGGACACACTTGTCCGTATTGCCAGCGAGTTATCAAAAAATTCAATAACTTTGAAAAGCACGTACAGATTCACTACAAGGAAGCCAAGCTGCAGAAAGGTGTGGCAAAACAGCCGGCCGGTGTCAATGTCAAACGGGAAGTGGGACGTCCCAAAAAGGACATTGATGTAGCTACGACGAGCCAAATAAAATTCGAACCTGATGCTCAATCATTAGATGTTGAATTGATTACTATTGACGAATTGACACATATTGAAGAGGTTGAGGAATTGTCCCAAAGCAATGAAGACGAAGATGTTGCAACGTACACCTTTAAGGATATTGAAAAGGACATAATAAAACTCACCAATGATGAGTCTGGAGATGATGACAGAATGGACAACTCATCGAATGATGAGAATCAAGACGATGTTGATGAGTCGACGACAAAGAAACTGGCTCAGTGTCCTCATTGTAACAAAAATTACTCCTCGCGCAGAAGCCTTCAGAGCCACATCTATGAACATCACCAACGTCCTAAGCCGCAGGTGGCGATCGAGTGCGATATTTGTGACAAGAAGTACGCGTCAGAGCGCGGCTTGCGTGCACACCAACGGGAACGCCACAACATGCACAAAGTCGACGATCACAAGTGTCCATATTGCAGCAAAATCGTGCATCGCCTGGACAATTTCAATCGTCACGTACAGTCACACAAAAAGCAGCAAAAGGAGACCGAGATCGCTTCACGCAAGTCCAGCACGTACTGCAAAATTTGTGAAAAGTCCTTCCTCAGCGCATATTACTACAAGGACCACATGAAAAGCCACGCTGATCCGgcgttcgcatgcgaccagtgcggcgagaaattccactcgaaaatcaaattgaattcgcatatgcgcgttcatcgcagcgccaaggagcacctgtgctcagaatgcggcaaatgcttcagcaagagtgagtatctgaaagtgcatctgatgcgtcacaacggtgtgaagccgttcaagtgcaactactgcgagaagacgttcgtttccaagagtgaggtgcgcctccacgaacgctaccacaccaatcagcgcattcgcgagtgcgagatctgccacaagcagttccatcgcatgaccagtctaacgattcacatgcgcacgcacacgggcgagcgtccgtacgcatgtccgcactgcgacaaacggtttacgcagcgcaacgacatgaagacgcacgttcgtcgcgaacacaccggcgagaagttcacctgtgaactgtgttcggcggctttcattcagcagtaccacttgacgcaacatttgcgacagatccacaacaTGGACGTCAAATCGCACATAGGGCGTGTCGAAAAGGTATCCACTCCCATCACGCGCTTGCCTATCAAACCGGGCCGAAAGCCGATCAAAGTGGAACCGCAAGCCCAGGATGATATGAAGGTTACTGTGCCGGTTATCGGCCTCGACGTTAAAACTAATACAATGACTTGCAATAATGTTGAAATTGGAATTAAACCGCTCTTATAG
- Protein Sequence
- MASGVDISSICVCCMKNDGDNMDSVFTELTFVDAHMPSCSYLQLIYDCTQLKIATDVQNQMKICNDCIYSLTRAYLFRLQVHQSSKQISLILGSDDWKDPQQNGFNEVSSQTEHVTIYPCELCDNIYYDARTLKIKYSGFARKNTCPICSKLLPRRGRLESHLKMHKEDIKFLGNLEDMPYKDCLLKILNETSDTDEIDDLNIDDLSPDDESLSTISEYDLFEEEHKATDSAYLEIEEIGELGSKDDFVTEVEYLDNELEEEEEAEAEDQIEEQFEIIEEDFKGTGPISYKCESCTTANAMFSGIHKNIIHNDFEGHTCPYCQRVIKKFNNFEKHVQIHYKEAKLQKGVAKQPAGVNVKREVGRPKKDIDVATTSQIKFEPDAQSLDVELITIDELTHIEEVEELSQSNEDEDVATYTFKDIEKDIIKLTNDESGDDDRMDNSSNDENQDDVDESTTKKLAQCPHCNKNYSSRRSLQSHIYEHHQRPKPQVAIECDICDKKYASERGLRAHQRERHNMHKVDDHKCPYCSKIVHRLDNFNRHVQSHKKQQKETEIASRKSSTYCKICEKSFLSAYYYKDHMKSHADPAFACDQCGEKFHSKIKLNSHMRVHRSAKEHLCSECGKCFSKSEYLKVHLMRHNGVKPFKCNYCEKTFVSKSEVRLHERYHTNQRIRECEICHKQFHRMTSLTIHMRTHTGERPYACPHCDKRFTQRNDMKTHVRREHTGEKFTCELCSAAFIQQYHLTQHLRQIHNMDVKSHIGRVEKVSTPITRLPIKPGRKPIKVEPQAQDDMKVTVPVIGLDVKTNTMTCNNVEIGIKPLL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -