Basic Information

Insect: Sylvicola fuscatus
Gene Symbol: -
Assembly: GCA_026546915.1
Location: JANSTS010006348.1:38584-41027[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0079 0.5 10.6 0.9 1 23 266 288 266 288 0.97

2 12 0.0011 0.071 13.3 4.1 2 23 298 319 297 319 0.97

3 12 0.00024 0.015 15.4 0.4 2 23 326 347 325 347 0.96

4 12 3.4e-07 2.1e-05 24.4 1.1 1 23 353 375 353 375 0.99

5 12 1.8e-06 0.00011 22.1 1.9 1 23 382 404 382 404 0.99

6 12 2.8e-06 0.00018 21.5 0.9 1 23 410 432 410 432 0.98

7 12 0.00013 0.0083 16.2 0.2 1 23 438 460 438 460 0.98

8 12 5.7e-05 0.0036 17.4 1.0 1 23 466 489 466 489 0.95

9 12 0.00021 0.013 15.6 4.8 1 23 495 518 495 518 0.98

10 12 5.3e-06 0.00033 20.6 2.9 1 23 524 546 524 546 0.99

11 12 8.7e-06 0.00055 19.9 1.4 1 23 552 574 552 574 0.98

12 12 0.0011 0.067 13.4 0.1 1 22 580 601 580 604 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0079	0.5	10.6	0.9	1	23	266	288	266	288	0.97
2	12	0.0011	0.071	13.3	4.1	2	23	298	319	297	319	0.97
3	12	0.00024	0.015	15.4	0.4	2	23	326	347	325	347	0.96
4	12	3.4e-07	2.1e-05	24.4	1.1	1	23	353	375	353	375	0.99
5	12	1.8e-06	0.00011	22.1	1.9	1	23	382	404	382	404	0.99
6	12	2.8e-06	0.00018	21.5	0.9	1	23	410	432	410	432	0.98
7	12	0.00013	0.0083	16.2	0.2	1	23	438	460	438	460	0.98
8	12	5.7e-05	0.0036	17.4	1.0	1	23	466	489	466	489	0.95
9	12	0.00021	0.013	15.6	4.8	1	23	495	518	495	518	0.98
10	12	5.3e-06	0.00033	20.6	2.9	1	23	524	546	524	546	0.99
11	12	8.7e-06	0.00055	19.9	1.4	1	23	552	574	552	574	0.98
12	12	0.0011	0.067	13.4	0.1	1	22	580	601	580	604	0.91

Sequence Information

Coding Sequence: ATGGCGTCGCAGAAATCTTCTAAGAAATCATTTAGCTGCTACTTGTGTAAAAGCGTCATTCCATTACTTCAAAATGTCTATGAAGTATCAAAAGACGAAACAGTGTCTGTGGCGCTGGCACAGATTGTGGGAACCTCCGTCACAAACGAACATAAATATTTGTGCACTGGATGCTACAATAAATGCGTTCAGTTTGGCGAGACCCTTGTCAAGGCGAAAGAGATGAAAGAAGCTTTGCTGAGGCAAATAACCTCAAACTCTCAAGATGGCTCAGAAACCAACGACTCACTGGTGGAGATGGTTTACGAAGATGAGGAGACCTATGGCTTGGAAGAGGAAAAATATATGACGGATGAAAATCCAACAATGCCACAAGATGAAAACGATGATGACGAGCCTGGTTATGTTCTTGTGCGTGAGGAGACAGATGAACATGGCAATACAATTGTCACTGAAATTGATGAAAATGAAGCCGACCAAATGGGAGAGGAACTGCTTAACCTTCTCTCAGAAGATAATATGTTGGAAATCGTGAAAGACAATCAGGCAAGTGAGGATTACAAAGCAATCGAGGAAGCAGATGTGGAAATTGATGGTCAAGAAGATGAAAATTGTGAATTCGATGGGCAAGAGCTAACGACGGAAGAGGCCGATCCGGCGTTCCTTTTTGTCGATGGCGCCTACGTCTGCCAGCTTTGCGTTGTTGACGGAGATGAAGTCAAACTTGATCGGCTTAAGAAATTCAACAAAAATACTATTGCGACACATTTACGGGTGGTCCACAGTTTGAGGGTTTTTATTTGTGAATTTTGCTCGTCATTTTTTACGGATCGCCCCAGCTACGAAACTCATATGGAGAATCATGATAAATCTGATGATGAATCAATCATTCAATGCCGAATATGCCAGCACACGTTCAAAGACATCAAAACGTTCCGCATCCACCGACGGACACACAATGTCGCCAAAATGTGGTCCTGCGATGAATGTCCACGAAAGTTTTCATCCTTTAATCTCCTTGAGGAAcacaagaacatgcatactggcaaacgtccctacaaatgctccgagtgttcaaaagactttgcctccaagtacacactgacagcccacatgaaaatccatacgcaccgggcgcgtccctatcagtgcaaattgtgtgacaaaagcttctacagcaaccagaatcttggccagcatgagcgcacacacaacggcgataagagtttcaagtgtcccatttgcgacaagtcgtttgccacccagcacaatgttgatgtgcacagggtcacacacagcggatacaagccgttcatctgccggatttgcagcaaaccgtttgcgcggcgcgccgaaattcgcgaccacgaacggacgcacaccggagaacgtccgtttgcctgcgacctatgtgattcgaagttttcgcagcgatccaacctgatgtctcacaaacgcgccacccacctgaacgccaagccctacaaatgtgagcagtgcgagcgctgcttcaagcggcgacgtctgctcgactatcacattaaatcgtctcacaccggcgaacgaccttacaagtgcaccatctgcgagtcgacgttcatttatccggagcacttcaagaagcacatgcgcatccacacgggcatcaaaccgtaccagtgcgaggtgtgcggcaaaccctttaatagtcgcgacaatcgcaatacgcatcgctttacgcacaccgacaagaaaccctttgaatgtttcgtttgtggcttgggctttatgcggaagccgatgctccatgcccacatgGCCTCGGCGGAGCACCACAGTGACACGATCATCATTAACCAACCGTCCATTTTGCAAGATGGTCGCAAGAAAAATGCTGGCGAGGAAGAAGAAGCGCCAGAGAGTGCGCCTGACAGCGACGAGCATTCCAGTAATGTTAAGTCGAAAAAAGTCTACTTCGTTTTGGAGTCAATGAAGACGGAATCGGAAGAGGAAGACATGAAACTGGGAGAGGTAAATGAAGATGATATTATCTTTCATAATGAGGATACAGATAAAAATTGTGAAATTGTCACCGAGGACTATATTGTAACAGGAGAAGATCAAGAAATTTACATCACAAACGACGAAAACGATTTTGTCGAAGAAAATGCTGTCATCGAGGAAGCGACGGATTCACAATTCGTTTATGACATTGATGGGAACGGAAGTGTTGAATGGATTGTACATAACTAA
Protein Sequence: MASQKSSKKSFSCYLCKSVIPLLQNVYEVSKDETVSVALAQIVGTSVTNEHKYLCTGCYNKCVQFGETLVKAKEMKEALLRQITSNSQDGSETNDSLVEMVYEDEETYGLEEEKYMTDENPTMPQDENDDDEPGYVLVREETDEHGNTIVTEIDENEADQMGEELLNLLSEDNMLEIVKDNQASEDYKAIEEADVEIDGQEDENCEFDGQELTTEEADPAFLFVDGAYVCQLCVVDGDEVKLDRLKKFNKNTIATHLRVVHSLRVFICEFCSSFFTDRPSYETHMENHDKSDDESIIQCRICQHTFKDIKTFRIHRRTHNVAKMWSCDECPRKFSSFNLLEEHKNMHTGKRPYKCSECSKDFASKYTLTAHMKIHTHRARPYQCKLCDKSFYSNQNLGQHERTHNGDKSFKCPICDKSFATQHNVDVHRVTHSGYKPFICRICSKPFARRAEIRDHERTHTGERPFACDLCDSKFSQRSNLMSHKRATHLNAKPYKCEQCERCFKRRRLLDYHIKSSHTGERPYKCTICESTFIYPEHFKKHMRIHTGIKPYQCEVCGKPFNSRDNRNTHRFTHTDKKPFECFVCGLGFMRKPMLHAHMASAEHHSDTIIINQPSILQDGRKKNAGEEEEAPESAPDSDEHSSNVKSKKVYFVLESMKTESEEEDMKLGEVNEDDIIFHNEDTDKNCEIVTEDYIVTGEDQEIYITNDENDFVEENAVIEEATDSQFVYDIDGNGSVEWIVHN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -