Sfus006101.1
Basic Information
- Insect
- Sylvicola fuscatus
- Gene Symbol
- -
- Assembly
- GCA_026546915.1
- Location
- JANSTS010014257.1:10076-12745[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0077 0.48 10.7 1.6 1 23 262 284 262 284 0.97 2 10 4.3e-05 0.0027 17.8 0.1 2 23 379 401 378 401 0.95 3 10 4.6e-06 0.00029 20.8 2.2 1 23 407 429 407 429 0.98 4 10 4.1e-05 0.0025 17.8 0.5 1 23 435 457 435 457 0.97 5 10 0.00071 0.045 13.9 3.6 2 23 464 485 463 485 0.97 6 10 1.9e-07 1.2e-05 25.2 2.0 1 23 491 513 491 513 0.98 7 10 9.6e-08 6e-06 26.1 3.1 1 23 519 541 519 541 0.99 8 10 0.00036 0.023 14.8 4.7 1 23 547 569 547 569 0.99 9 10 4.1e-06 0.00026 21.0 0.1 1 23 575 597 575 597 0.98 10 10 3.7e-06 0.00023 21.1 2.2 3 23 605 625 603 625 0.98
Sequence Information
- Coding Sequence
- ATGCCCATATGTCGTCTGTGCGGTGAAAACAACGCCAAAGGATATCCATTGTACTGCATGAGCACTGATAAAGATTCCTACAGCGAGGATGTCAGCGAACTAATCAACAAATACCTTCCACTACAGATATCAGATGATGGAAAATTTCCACGTTGGATTTGTCCTGGATGCCACTTGCAAGTAGAGTCCACTGCTCAGTTCTTTGATCTAATCATTACCGGTCAGGACATCCTGAGAAAAAAGTATATCACCCAGAAAGAAGAGGAAGACCGATATTTCGATGAAAACATCGAGCAAACCTTTAACGGTGAAAATCTGATTGATCAAAACGACTTGTATCCGTCAGGACATGAGATGACAAACAAAATGATTGGTGTTTCTGTGAAAAAGAAGAAAAAACGTGGACGCCCTCCCAAAAGTGTTACTGATAAAATAATAAGTTTGCAACAACAACATCAACCGGTTTCGGACGTCATTCAGGAGGCGATGAAAAGTGTTGATGACTTATTGGGCGATCTAGGTGAGGGTGGCAGAAGAAAGCGACAAATTAAAATACCAACAAGGTATCAGGAAGCGATCCAAGGCAAGGAACTGGAGAAAGTGTTTGTCAGTGAAGGAGTCGCTTGGTCGGAAGATTCCGATTATGAGGTGTCTCAAGGTGAACCGGCCGCTGACAAGTTAATAGGGCAACTGCAAACGGAGGATGGCACCAATTTGGGGGGTCTGGTCGTTGATAGTAATGGTCACTACAAAAAAGGTAAACGCACGAACAACAAAACCAAATTCGTGTGCGACATATGCAATGAATCGTACATTCATTATGAACGGTACATGAGTCATCGATTATCTCATGAAGGAGCCGAGCAGGATCAGAATACGTCACATCAAGATAAAACAGAATTTGAAGAACCTGGAAGTGTTTTTAATAATCCATTAGCAGCGCTAGAACTCACCAAAGTGCCAGATAAACCAGAAAATCAGAACCTATTGGATCCCAGCAAATCTGTGGAACCCTTCAGCGTCCAGATTGAATCATTCGATTTGCAGAATATTTCATACGATCTAAACTTAGAAAATACCCCCTTTGAATATTTTCCTCCAGATGACCAGAATGAATCAAAATCCACCAGCCTTAACTGTGAAACGTGTCCAAAGATATTTTCAACCAGCGCCAAACTGGCAGAGCATAGACGAATCGTTCACAATCAAAACCAATTGTTTGTTTGCAACAAATGCGGCAAGAAATTCAAGCTAAAGATCCAATTGCAACGTCATTATGTCACCCACTCGACATTACGACCGTTTCCATGTACTCAATGCACCTTGGCATTTAAGACTCGTCGAGCTCTTACGAACCACCAGATAGTccatacagcccaaaagtccctcaaatgccaaatctgcgacgtgcgctgtagccaccaatacgccatgcaaatgcacatgcgactccactccggagagaaaccgtttgtctgctcgttctgcaagaaatccttcacgcagaaaagcaacatgatcgagcacatgcgaatccacacaaacgagcgtccgtttacgtgcaaattgtgcggctacagcttcaaaaccagctcacagtatcagattcacatgcgacgccacaacaatgaccgcaagtacgagtgcccacactgcgacaagcgcttcctcaagatgagcatgtttcgtcagcatcaacgtcgtcacaatgacgagcgtcctttttcctgtgatatatgtagccgggcatttgtggaggcttgggctctgcgaaagcacatccgtacccacactggcgagaagccgtatggatgctcagagtgtcCACGGATGTTTTCTGATTGCTCAAATTTGGCGAAACACCGAAAAACTCATCAACGCAAAACTTCCGACAAGCTGGTGGAGGAGGATGAGGCAAAGAATCCCATGGAACCAACCACGTGGCAGTTAAACAATGATGACTTCATTTACATAACGTATCAGCCGACAAATGATGAAGAATTCCAGCAACAATCAGCCGAAACGGATTTGATTCCGTCCGTAAATTCTGTTGAGGATACTCAGAACTCCCTGCTGCATGTCAGTGATAACCAAAACAATATGGTTCTGCTGACGGCTGGTGACACTGCCAATTTAGAGACTGCTGCGAGCATTTTTGCTCATACTAGTTTTCCCAGTGAATTACCAAACCCGGAAAATAGTATCATTTGTGATGAGACTTTACTGGGACTTCCTGAATCGACGCCAATTGCTCAAGAGGCCATTTACGACGACAATGCCCAAGCAGTTGAATTTATCATCCCAGATGGAACCAAGTTTAAACTGATCCCTAGCTTCAACACGGATGGTGTTGATTTATCTGAATTGATCTCAAATGTTTAA
- Protein Sequence
- MPICRLCGENNAKGYPLYCMSTDKDSYSEDVSELINKYLPLQISDDGKFPRWICPGCHLQVESTAQFFDLIITGQDILRKKYITQKEEEDRYFDENIEQTFNGENLIDQNDLYPSGHEMTNKMIGVSVKKKKKRGRPPKSVTDKIISLQQQHQPVSDVIQEAMKSVDDLLGDLGEGGRRKRQIKIPTRYQEAIQGKELEKVFVSEGVAWSEDSDYEVSQGEPAADKLIGQLQTEDGTNLGGLVVDSNGHYKKGKRTNNKTKFVCDICNESYIHYERYMSHRLSHEGAEQDQNTSHQDKTEFEEPGSVFNNPLAALELTKVPDKPENQNLLDPSKSVEPFSVQIESFDLQNISYDLNLENTPFEYFPPDDQNESKSTSLNCETCPKIFSTSAKLAEHRRIVHNQNQLFVCNKCGKKFKLKIQLQRHYVTHSTLRPFPCTQCTLAFKTRRALTNHQIVHTAQKSLKCQICDVRCSHQYAMQMHMRLHSGEKPFVCSFCKKSFTQKSNMIEHMRIHTNERPFTCKLCGYSFKTSSQYQIHMRRHNNDRKYECPHCDKRFLKMSMFRQHQRRHNDERPFSCDICSRAFVEAWALRKHIRTHTGEKPYGCSECPRMFSDCSNLAKHRKTHQRKTSDKLVEEDEAKNPMEPTTWQLNNDDFIYITYQPTNDEEFQQQSAETDLIPSVNSVEDTQNSLLHVSDNQNNMVLLTAGDTANLETAASIFAHTSFPSELPNPENSIICDETLLGLPESTPIAQEAIYDDNAQAVEFIIPDGTKFKLIPSFNTDGVDLSELISNV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -