Basic Information

Insect: Sylvicola fuscatus
Gene Symbol: -
Assembly: GCA_026546915.1
Location: JANSTS010001524.1:10442-13860[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 6.3e-06 0.0004 20.4 1.0 1 23 177 199 177 199 0.95

2 15 0.00034 0.021 14.9 4.1 2 23 206 227 205 227 0.96

3 15 9.6e-05 0.006 16.7 0.1 1 23 312 334 312 334 0.98

4 15 0.021 1.3 9.3 0.1 1 23 340 362 340 362 0.98

5 15 0.00016 0.0098 16.0 0.2 1 23 400 422 400 422 0.99

6 15 0.0067 0.42 10.9 0.3 1 23 433 455 433 455 0.94

7 15 0.014 0.89 9.8 0.2 1 23 461 484 461 484 0.95

8 15 0.058 3.6 7.9 3.0 2 19 492 509 492 510 0.96

9 15 1.6e-05 0.00097 19.1 5.8 1 23 519 541 519 541 0.97

10 15 0.0072 0.45 10.7 0.5 2 23 547 568 546 568 0.96

11 15 3.5e-06 0.00022 21.2 0.5 1 23 576 598 576 598 0.98

12 15 0.0034 0.21 11.8 0.2 3 23 606 626 604 626 0.97

13 15 6.1e-06 0.00038 20.4 0.3 1 23 632 654 632 655 0.96

14 15 0.074 4.6 7.6 0.1 1 16 669 684 669 686 0.84

15 15 6.3e-05 0.004 17.2 0.3 1 23 1049 1071 1049 1071 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	6.3e-06	0.0004	20.4	1.0	1	23	177	199	177	199	0.95
2	15	0.00034	0.021	14.9	4.1	2	23	206	227	205	227	0.96
3	15	9.6e-05	0.006	16.7	0.1	1	23	312	334	312	334	0.98
4	15	0.021	1.3	9.3	0.1	1	23	340	362	340	362	0.98
5	15	0.00016	0.0098	16.0	0.2	1	23	400	422	400	422	0.99
6	15	0.0067	0.42	10.9	0.3	1	23	433	455	433	455	0.94
7	15	0.014	0.89	9.8	0.2	1	23	461	484	461	484	0.95
8	15	0.058	3.6	7.9	3.0	2	19	492	509	492	510	0.96
9	15	1.6e-05	0.00097	19.1	5.8	1	23	519	541	519	541	0.97
10	15	0.0072	0.45	10.7	0.5	2	23	547	568	546	568	0.96
11	15	3.5e-06	0.00022	21.2	0.5	1	23	576	598	576	598	0.98
12	15	0.0034	0.21	11.8	0.2	3	23	606	626	604	626	0.97
13	15	6.1e-06	0.00038	20.4	0.3	1	23	632	654	632	655	0.96
14	15	0.074	4.6	7.6	0.1	1	16	669	684	669	686	0.84
15	15	6.3e-05	0.004	17.2	0.3	1	23	1049	1071	1049	1071	0.98

Sequence Information

Coding Sequence: ATGGACACAGAATACACGATATGGACCCACGGGAGTGCGGACGACCCAACGGATCACAGTCATGTGGTCATTGAAGAAATTGTGATGCAGAAAGGTCACAATCACATCGACGATCTGATCGAAGAGGTCGACGACGATGAACAAATGGATGAGGAGTATCTCGTCGGCGAGGAGATAATCCCCTCCTCCGAAATCGGCCAGATAACAAACAGTTTAGACCAGCTGGCCGCCGAGAACCTCATCTACATGGCGCAAGATGGCAACGCCATGGCGATGGGCGATCTGATTGAGAAGGAGGTGGAACAAACAGAGACGGCGGATTACAATGAGCCGCAATACTTTGAGTGTCAGGACGAGGAAATGATTACGGAAGAGATAATCACTGAGGACTGGGTGCAGTCGCAGAGTGGCGAACGCATCGAAATTGCCGTCGATCAGCTGACAACTGGCACTGTGATTGTTGACGGCACAATCAGTGATGATGTGCCGCTACCGACAGACCAGGATGAGTATACCAGCTCGCGTCCGTATCCGTGCGACTTTTGCAGTCGACGCTTCCGCAAAAAATCCAACTTGGAGAATCATATGGTCGCCCATCGCACCGACAGACAGTGCGTCTGTCATTTGTGCGGTCTGCGCTATACGCGTCGCAATGAGCTGCTGAATCATTTGAAGATGCACGCTCAGATGCCAGAAGAGGACATCATGAATGAGGGAATGGACATATATCATGTCATCACTAAAACGGAGGCACCGGCGCGCAGACATCGCGTCAAAGTGGAGAACCAGCCCAGACAGCGCACCGTCAGCAGTAATTATTCGCACAATGACCAGGATGACATGCAGGTGCTGCTAGAGGCGGCCCAACAGCATGATGAGATGAATCGCTACAATAAAACGGAAATGTTTCCGCAAAAGGATCCAAAGAAACCGTTTGTCTGTCAAACGTGCGGCATCGCATTCGCCAGGGAAAAGGCTCTCAACTCTCATGCAAAGATTCACGGCGCTGACACTCCGTATGAGTGTGAAACCTGTAACGAAATGTTCTGGGACATTGGTTCATTGCGGGAGCACGAGAAATCTCATTTAATTATTCCTGATGAGGTGTCAAGCAATTCAGAGTATGAGCCAGAAAAAGACAACAACCAGGCCGATGATTCTGAATCCGACACTTTGGGACAGTCGACCTATACCGATTATTACTGCGATCAATGTGGAGCTGGCTTCTTAAAACCAGCCCAATTAAAGAAACACATCAAAACCCACACTAAAACTCGCTTCAATTCGGACACGCGTCACTGTTGCAACGTCTGTGGCCAAACATTTGATGAGGCACTGGACTTGTTGGCGCACGCTGAAATTCACGCACGCAATCAATCCTACACGTGCAACCTTTGCGGCGATGTGTTTGCCCAAGAGAATCAGATAAAAATGCATTTGCAGGAGCGTCATGCTGATGAAATGACAGAGAacacgtgccgcttgtgtggcaagcactgccgcgactcgcgaatgctgatgaaacactcttgggatcattcacgcgagaagaatcatccctgctccaagtgcggcaaaacgttccacaacaaggcgcgcctgaagcgccacatgcagtcgcatcgcaacaaatccgtcacgtgtgacgtgtgcaacgaagagtttccggacggacggtcgctcatgaatcaccgccactcgcacaccaacgtgtcgggcaggcagtttccgtgtcgcgagtgcggcaagacgttcggctcgcgcagctcgcagcagattcacatgcgcattcacactggcgagcgtccgtacggatgtcgcttctgctggaaggcgttcgccgacggcggcacactgaggaaacatgagcgcatccatacgggcgagaagccgtacgtgtgtccggtgtgtcctcgcgcgttcaatcagcgtgttgttctccgcgagcatattcgctcgcatcactcggggccggaccagaagtatggaagcAGCGCGGCGCCATACCATTGCACCGTTTGTGGCATGAATTTCTCTTCGTCTTTGTTGCTCATTCAGGATTTGATCCAGCACAGTGACAATAACACGGCGGAACAGCGACAGCCTCCGGCTGGCCCACGAAAGTATAAGCGCCGCCGCAAGTTGAAGCCGCATGAAATAGAAAGAATGAAGCCGGAAAAGGCTGAAACCGACTTCTCGGAAAATGAATACGACGAGGAGCGTTCGACGTATAAAATGGTGGCCCAAGAATCTCCGCCAGTCATAGTGCCGCCGCCGAAAAGAAAATACAATCGCGAATCGACCACAACCAAACGAGCGCCGGTGGAGACCAAAACCACGGCCCCAGCCAGGATGACAACTACCCAGTCGACGAGTCGGCGGTCACTCGCCATTCCCAACCAGATCAACGAAAACTACAACACTGTCATTGATAATGTAGAGAATACGTTGCAGTCAATTGATTCCCTAGTCGTGCCAACCACATTGATGCAAACACCGCAACATCACCACAAACCGCAACCGCCGCAACCAACACCGCCGACTCCGCGCACCCAGCGGTCGACAGCGGCCGCACGGAAGCGCGAAACCAAGAAAAGCGAAGCGGCGGCCCGTCCCAAAATGATACATACCGAAAAGACGCGCGTTGCCACCGACGAGGGTAGCAAGAGACGCACCAAAACACTGATCACACGCACCGATGTCGGTTCATCGTCGCGTGCCTCCAAAACCAGTTCACGCAGATCTCGCACCGCTACAGCACCGTCTACTGCGACGTCATTTAGCGGTAGTAGCGGCGGCGGCATCATGATGGACGCAGATATTCTTGAGGAATTGTCAACAAAGAAACTGGATCACTACAGTTCGGATTTGGTGAATGATTTAGAGCAAATTCTGCGCTCGCCAATTAAGAAGCCGCCAACGTCGTCGCCTGAGGTCAAAGTGAAAACGGAGCCCATTGAGCAGACGAGGACGTCGCTGCGCCAGCGACGGTCCAGGGCACCCATTACATCGGCTGCATCGACATCGACGGCTGATAAATCGCCCAGCGACTCGGACTCGGCCAGCCGACAGATGGAACTGAAGTCGGTCATCAAGGTAGAGCGGGAGGTGCCGCAGGACGCAAATGATCCAAGCAACGAGCTGTTCCAGTGTTCGATGTGTCGCGCTATTTTCTCGGATCGGTCCCAGTTACTCTCTCACGTCAACATCCATATTTAG
Protein Sequence: MDTEYTIWTHGSADDPTDHSHVVIEEIVMQKGHNHIDDLIEEVDDDEQMDEEYLVGEEIIPSSEIGQITNSLDQLAAENLIYMAQDGNAMAMGDLIEKEVEQTETADYNEPQYFECQDEEMITEEIITEDWVQSQSGERIEIAVDQLTTGTVIVDGTISDDVPLPTDQDEYTSSRPYPCDFCSRRFRKKSNLENHMVAHRTDRQCVCHLCGLRYTRRNELLNHLKMHAQMPEEDIMNEGMDIYHVITKTEAPARRHRVKVENQPRQRTVSSNYSHNDQDDMQVLLEAAQQHDEMNRYNKTEMFPQKDPKKPFVCQTCGIAFAREKALNSHAKIHGADTPYECETCNEMFWDIGSLREHEKSHLIIPDEVSSNSEYEPEKDNNQADDSESDTLGQSTYTDYYCDQCGAGFLKPAQLKKHIKTHTKTRFNSDTRHCCNVCGQTFDEALDLLAHAEIHARNQSYTCNLCGDVFAQENQIKMHLQERHADEMTENTCRLCGKHCRDSRMLMKHSWDHSREKNHPCSKCGKTFHNKARLKRHMQSHRNKSVTCDVCNEEFPDGRSLMNHRHSHTNVSGRQFPCRECGKTFGSRSSQQIHMRIHTGERPYGCRFCWKAFADGGTLRKHERIHTGEKPYVCPVCPRAFNQRVVLREHIRSHHSGPDQKYGSSAAPYHCTVCGMNFSSSLLLIQDLIQHSDNNTAEQRQPPAGPRKYKRRRKLKPHEIERMKPEKAETDFSENEYDEERSTYKMVAQESPPVIVPPPKRKYNRESTTTKRAPVETKTTAPARMTTTQSTSRRSLAIPNQINENYNTVIDNVENTLQSIDSLVVPTTLMQTPQHHHKPQPPQPTPPTPRTQRSTAAARKRETKKSEAAARPKMIHTEKTRVATDEGSKRRTKTLITRTDVGSSSRASKTSSRRSRTATAPSTATSFSGSSGGGIMMDADILEELSTKKLDHYSSDLVNDLEQILRSPIKKPPTSSPEVKVKTEPIEQTRTSLRQRRSRAPITSAASTSTADKSPSDSDSASRQMELKSVIKVEREVPQDANDPSNELFQCSMCRAIFSDRSQLLSHVNIHI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -