Sfus001192.1
Basic Information
- Insect
- Sylvicola fuscatus
- Gene Symbol
- -
- Assembly
- GCA_026546915.1
- Location
- JANSTS010008473.1:2988-7420[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 6 3.7e+02 1.6 0.2 2 19 172 189 171 190 0.92 2 18 0.0031 0.19 11.9 1.6 5 23 231 250 227 250 0.91 3 18 6.6e-05 0.0042 17.2 4.9 1 23 258 280 258 280 0.98 4 18 0.13 8.2 6.8 0.1 2 23 288 310 287 310 0.96 5 18 5.7e-06 0.00036 20.5 0.8 1 23 315 338 315 338 0.97 6 18 3.4e-05 0.0021 18.1 0.9 2 23 343 365 343 365 0.97 7 18 0.0076 0.47 10.7 3.2 3 23 374 395 372 395 0.93 8 18 0.00018 0.011 15.8 2.0 1 23 401 423 401 423 0.98 9 18 0.0051 0.32 11.2 0.4 1 23 429 452 429 452 0.90 10 18 0.49 31 5.0 0.2 6 23 728 745 728 745 0.98 11 18 3.1e-05 0.0019 18.2 0.4 1 23 751 773 751 773 0.98 12 18 0.00021 0.013 15.6 3.1 1 23 781 803 781 803 0.97 13 18 1.3e-06 8.1e-05 22.5 0.4 1 23 811 833 811 833 0.98 14 18 7.2e-05 0.0045 17.1 0.5 1 23 839 861 839 861 0.98 15 18 0.0066 0.41 10.9 4.4 2 23 867 888 866 889 0.95 16 18 0.00014 0.0088 16.1 3.7 1 23 895 918 895 918 0.97 17 18 0.00012 0.0074 16.4 1.8 1 23 924 946 924 946 0.97 18 18 0.0002 0.012 15.7 4.6 1 23 952 975 952 975 0.97
Sequence Information
- Coding Sequence
- ATGGAGAGAGGAGCTGAAAATCAGTCCAAATGGATTTGTGCGGGCTGCTTAAAACACGTTACAGAGTTTTATGAATTTTATACAAATATTATGGCCATTCATAGTGAGAAACAGGAACCAAATTATGAAGACTTGCATGCTCTAAAAGAAGAAGATATTGATGAGCAATGCCAAACACTTTACGACTTTAAAGATATCTTAAACCAAGATGATGCTGTCAATTACGACAACGTTGGCAACAAGAATGATTTAAATAATAAGGATTATAGATGTAAAGAAGATATTGGAATTGAAGAGGATATTTTTGAGCGAAATTCTGACGAGGATAGTTTAAGTAATACAGAAAATGACGAAGGTGATGGCAGTGATAGCAATGAGGAGTATTATGAGAACGATAATTTTGATGATAACAAAGAAGACAAAGATGACAACATACTAAGGAATAAAAAAATCAAAAGCGTAAACTCACAAAAACAGGAAACAGAAGACATGATCCGAAGCTATTTCGACATCAGGTGTGAGCTTTGTCTAGAGGAGTTTGATTCATTCTTTGAGCTGAAAGGACATTTTTGGCGTCAACATCAGATAAGAAAAGGATTTATTCGATGCTGTAAGACAAAACTGACAGACTACACGCAATTTTCTGATCATTATAAGTGGCACAAGGACCCGAATGCCTTTCTATGCATCCAGTGTAACAAAACGTTTAGATCACAATTAACCCTTCGAGTTCATTTGCAAAGTAAACATGTCGAAGAAGCGGCCAAGACCTATCAGTGCAAATACTGTAAAAAGAAATTCAGTACTAACACTCAGCAGAAACGCCACGAATTAATGCACAGGACGAAAGAAAAAGCTGTTGTCTGTGATTTATGCGGCAACAGGTATGAAAATCTGAAAGCGGTTTTGAACCATAAAAACACCGTTCACGTCGAGGCCGAGCACGTTTGTGATGTTTGTGGCCGAATGTTCAAAACGGCAGCTCAATTGATTTACCACACCCGCTCGACTCATGCGAATTCGGAAACATGCAGCATCTGTGGAAAAGTAACAAAGAACATCTTTGGATTGAATAGACACATGAAGCGATACCATGACCAAACTAATGTTCCAGTCAATTGTCCAACGTGTGGAAAACTTTGCAAACATCGAGAGGCGCTTAAAAGTCATACAAACTTTGTGCATAATGCTGTTCCACAATACAAGTGCTCACATTGCGAGAAAACCTTTAAAGCGGCTTTCATGTTAAGAGAACATGAAGCTACTCATACTGGAATTGATTTATACTCCTGTCCATACTGTCCAAGGACCTTCAAGGCTGGGGGGAATGTCGGTAAACATAAAAAAAATATGCATAAAAAGGAGTATGAAAGTGAACAGATGCGGAAGAACAAATGTACAGTGATGGCTATAACGAATCAATGTAGATTATGCTTGCAGCATGATCCTGAAAACGTGTTCATCTTCGGCGAACAATACTCAATTCACGATGTTGTCGAAAAATTAACATTACTTTTCGGAAGCGAATTTATCAAGGAAGATCATCCAGAGCACATATTTCCAAAAAAGATTTGTCAAACATGTCGCGAACAAGTTTATCAGTGTTTCGAATTCTGCACATCTGTGCTCAACAATCACAAGCGTCTCATACAAATTTATGAAGACCAGCAAGTAGCTGTCCAAGATACGAATTATCAACAGTCGAATTCCAAGATTTATACGGACATAAATCCACCCTTGGATCTACTGCACACTGTCGACATTCGAGTAATACAAGAGGACATCGGTGAGGGACAATCAGTGGCAGAATGCACACAAGATCAACGTGAATCTGATGTCGGATTGGATGTTATTTATTACAGTGATAGCTTGGAGTCAACATCTTCTTCTAATGAATCATTAAATTCAGAAGAAGACGTAGACAGACAAGATAATAAAGATATTGAATCATCTTCTGAAGATAATGTTGAAATAAAAAACCAAAAAATTAGAAAGGAGGTAAATGAACAGCTGCCGGAACATCTGAAAGTAAGAACTACAAAGGAAATGGGAGACGCCAAAATTAAGGAGTTTGTACAGTTGTACTGCGATATTTGTGACGATCGTCCGGTATTGGAAACGTTTAAAGAACTTCAAATTCATTACAAAAATGTGCACAATACAAAAGGATACGCTGTCTGTTGTGACAAGAAAATATACAGAAAAGACAGACTTATGGTTCACATAATGAATCACATTGACCCTGAGGCATTCAAGTGTTCAATTTGCGGCCAAGTATTAAAATCCAAGGCTGTTCTGAAGACTCACATGATGCAGCATTTGCCAGTGGAAGATCGCTGTTTCCAGTGCTCGCAATGCAGTCATCGATTTGTGTCACGTTCTCAGCTTAGGAATCACGAGGCATCTCACATTTCTGTGGACAAAATGCAGTACAGCTGTCCAATTTGTGGAAAAGCGTTTTCTCGCAAGTTCGTGATGGCAAAGCATCAATTGACACATTCCAAAGAGAAAAACTTTGTCTGTGAAATATGCGCTCACAACTTCGCTTCCGAGTCAAGTTTGAAGTCTCACATGATTTCTCATAGCCAAATGCAAACTCAATGCACCATATGCAGAAAATGGTACAAGAGTCCGCAGAATATGCGCAAACATTATCGGCGACATCACGATACTCATCGTTCGTACAAGTGCAACACTTGCGGTAAAGAATGCAGTACTCAGTGTTCACTGGCGGCTCATGTTAAATACGTCCACTTGAGAGTGGCCCCATTTAATTGCTCCATCTGTTCAAAACAATTTCGACGAAAACTGGAATATACCgagcacatggccagacataccggcgagattctgtacagctgtgaattctgcgcgaaaacattcaaatcaagttccaattATTTTTCCCATCGAAAGAAACGACATACCAAAGAATTGACTGAAACAGATCATCCAAAATAA
- Protein Sequence
- MERGAENQSKWICAGCLKHVTEFYEFYTNIMAIHSEKQEPNYEDLHALKEEDIDEQCQTLYDFKDILNQDDAVNYDNVGNKNDLNNKDYRCKEDIGIEEDIFERNSDEDSLSNTENDEGDGSDSNEEYYENDNFDDNKEDKDDNILRNKKIKSVNSQKQETEDMIRSYFDIRCELCLEEFDSFFELKGHFWRQHQIRKGFIRCCKTKLTDYTQFSDHYKWHKDPNAFLCIQCNKTFRSQLTLRVHLQSKHVEEAAKTYQCKYCKKKFSTNTQQKRHELMHRTKEKAVVCDLCGNRYENLKAVLNHKNTVHVEAEHVCDVCGRMFKTAAQLIYHTRSTHANSETCSICGKVTKNIFGLNRHMKRYHDQTNVPVNCPTCGKLCKHREALKSHTNFVHNAVPQYKCSHCEKTFKAAFMLREHEATHTGIDLYSCPYCPRTFKAGGNVGKHKKNMHKKEYESEQMRKNKCTVMAITNQCRLCLQHDPENVFIFGEQYSIHDVVEKLTLLFGSEFIKEDHPEHIFPKKICQTCREQVYQCFEFCTSVLNNHKRLIQIYEDQQVAVQDTNYQQSNSKIYTDINPPLDLLHTVDIRVIQEDIGEGQSVAECTQDQRESDVGLDVIYYSDSLESTSSSNESLNSEEDVDRQDNKDIESSSEDNVEIKNQKIRKEVNEQLPEHLKVRTTKEMGDAKIKEFVQLYCDICDDRPVLETFKELQIHYKNVHNTKGYAVCCDKKIYRKDRLMVHIMNHIDPEAFKCSICGQVLKSKAVLKTHMMQHLPVEDRCFQCSQCSHRFVSRSQLRNHEASHISVDKMQYSCPICGKAFSRKFVMAKHQLTHSKEKNFVCEICAHNFASESSLKSHMISHSQMQTQCTICRKWYKSPQNMRKHYRRHHDTHRSYKCNTCGKECSTQCSLAAHVKYVHLRVAPFNCSICSKQFRRKLEYTEHMARHTGEILYSCEFCAKTFKSSSNYFSHRKKRHTKELTETDHPK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -