Sfus012503.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Sylvicola fuscatus
Gene Symbol
-
Assembly
GCA_026546915.1
Location
JANSTS010007225.1:2759-6130[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 7.7e-05 0.0048 17.0 1.4 3 23 171 191 170 191 0.98
2 15 0.0021 0.13 12.5 2.6 1 23 196 219 196 219 0.95
3 15 0.2 13 6.2 0.4 2 23 319 341 318 341 0.96
4 15 0.0042 0.26 11.5 9.2 2 23 398 419 397 419 0.98
5 15 0.0015 0.092 12.9 2.5 2 23 446 467 445 467 0.95
6 15 0.00079 0.049 13.8 2.2 1 23 546 569 546 569 0.97
7 15 0.013 0.83 9.9 0.6 1 21 576 596 576 597 0.94
8 15 0.051 3.2 8.1 0.3 2 23 607 629 606 629 0.95
9 15 2e-06 0.00013 21.9 4.0 1 23 643 665 643 665 0.98
10 15 2.7e-07 1.7e-05 24.7 1.0 1 23 672 694 672 694 0.98
11 15 6e-08 3.8e-06 26.7 1.7 3 23 707 727 705 727 0.96
12 15 1.5e-05 0.00096 19.2 2.8 1 23 733 755 733 755 0.99
13 15 7.9e-07 4.9e-05 23.2 2.2 3 23 763 783 761 783 0.97
14 15 5.7e-08 3.5e-06 26.8 2.0 1 23 789 811 789 811 0.99
15 15 0.00014 0.0088 16.1 0.1 1 23 817 841 817 841 0.92

Sequence Information

Coding Sequence
ATGGAATTCGATATCGAGAAAACTTGTCGAGTTTGTCTGTCGCAGAAGAACCCTCTGACATCACTTTTTGCACAGGAATATGGTATAGAGTACCATTCCATGATAAAACTCTGCACCAACATAGAGATAAATAGCTCAACAGAACTGCCACATTCCCTTTGTGAATCTTGCCTTTCTGACCTACGAACCAGCTATGACTTTAAATTGCGATGTCAATTCAGCCAGAATAAACTGACTAAGTTAGTCCACAATGACAAAGCGTCTGAACAGATTGCATTGAACTTAGTGGACAGCATCACCAGTCAAATTGATCCATTTGGCACAGAGATCACCATTCCAAACAATGTTTCAAAGATATCATTTGATGTGGACACCACTTTTGATAATGATGAATTCATTGATTCTGACAATGAACCGCTGGCTATGCCAGTACAAATTGTCGACGTTCAGAACATAAAGCAGGAAAACGATAACAATGCCAATCCAGGTGATACGAAAAAGAATAAAATCTGTCCCATTTGTTACAAAGGTTTTACCAAACTTTACCACGTCAAGCGCCACTTGCTCACACATAAAAAGCAAGGACATCCATGCTGCATATGTCAAGCCATATTTACCAGGGAAGTTGATCTCAAAAAACATCGTAGTAAGATTCACGGAATCGAAATTGTGGCTGATAAAAGTAATGATAATTCGTTAAGCCAAAAAACCAGTGTGGACAACTCCTTTGATTCGTTTGGCATTCCGGCAGATGAGCCCATTCCAAGTAAACAACCAGACAATGACAATCAAAGTGATGAATTCGATGAGTCTGATAATGAACCATTAGTAACGGTGATTGACTCTCATCGGTTGACACGCTCGAATATTTGCAGTCCAGACAACAATAAAAAGAGTCCCATGAAACCCAGTCACGTCACACGTCATTTAAGCATACAGGAAGTGGATAAAGTTAGTTGTCACTTGTGTACGGATGTTTTCTTTGGGTCCAATGATTTAAGTGAGCATATTTCGACGGTTCATCCGGAAAATGTTGTTAATTTCAAGAAAGAAGATCCTTCTTGTGAGCTTATTTTGGAAACAGAAAGTCTGAGAACGCCAGTAAAGAAAAGAAAAGCAGAAATCCCTGTTGAAAAGTCTGAAGAAGTATCGCCGGATTCCTCTAAAGAAGGCAACGCCAAATGGAATAAAAAATGTACTATTTGCAGTCGAGTGTTCTCTAAGCATTGTCACGTTAAACGGCACATGAAAGTTCATGAAAAGGACCCGCAGTTTTCAACTAAAATTAAGGAATTGGAAAAGATTCAATGTGAAGCTAATGGAGAGAAGACTTGCGTCTGCCTCATATGCGATAAAGAGTTTTATCGTATTCATTTACTTAGACAACATTTACTGGAGCACAACAACGAGGATTTGAGTGCTCGTGACCTGACCAGCAAAATGTTTCTGTTTAATGGAATTGTGATTTCCGAACAGAACATTGACTTGAATCAATCTGTAGCTAAGCTCATTGAAGAAAAGGAAACTTCTACTTTGGTTAGGATTATAAATTCTCGTGGCTTTGAGATGAGTTTAAGTGACTCTGAAACAGAAAGTGAGTCCGATTCAAAGGAACCATCAACAAATCCACGAACGTATCAATGTCCCTTATGCGAGCAGCAGTTTACCCGGCAGCATCTTGCGTTTGACCACATGAGTAAGCAGCACGACGGCGTTCGATTTGACTTTGCCTGTGTCCACTGTAACTTAAGCTATCCAGATGAGATGTCCCTTCATCGGCATTTACAAAATCAGTGTCAAAACGAACGCAAACTGCTAAAATGCGTTGTCTGTAACACTCGTTTTATGTGGGAACAATCGTTGGAAAAGCACATGAAATTGGCCCACGAGTCTCAAGTGGATGATCCCCACAAAGAGTCGaagccattccaatgtgaagtatgttcaaagaatttctcgcgaagtgagcatttgacgagacacaaaaagattcacgaggatacagtaaagagattcagctgtgaagtctgccaaaagagtttcagTCGCAAGGATAACATGAAatcacacatggcggtgcacacagaagttaaagaagtagtcgccaacaaacacctttgtgtctactgtggccgaagcttttcgaattcatcaaatctcatagtgcacatgcgtcgccacaccggcgagaagccgtacaaatgcgacctctgtgacaagggattcccccgttcgtccgacctgcagtgccatcgacgtacccacaccggcgaaaagccgtgcctctgcaccatatgcggcaaaggattctccagatcaaacaaactggtgcgacatatgcgcatccacactggcgtccggccgtacaagtgtccacattgtgatcgcgccttcacacagtccaacgatctgacgttgcacattcgtcgacatactggtgacaagccgtacgtgtgcggcatttgcggacaacgtttcatacaggggacggccctgcagaatcatagacgttcacaGGGTCATTTTGAGGAGGTGAACAATCAGGAGACTCAATTTTCGAGCATTAGTGTCAATAATCCGAATCGGGTGTTTATAAATACGTATCGAGTGAAGACTGATAACATGCCGAGCGTGAGCGCTGCACTTCGAAAGACGTCTACAAAACAAGCCGAATTGGATGATATCATTTCCAACAGTATTGAGAATAGCTTAATGAATGAGAGTATGACCACAAATACGGTCCAGGTTAAGACGGAAGACACTCCACTTGATATTGTCGATACCAATGGCTATCAACAGTATCAACAATATCACTTATGA
Protein Sequence
MEFDIEKTCRVCLSQKNPLTSLFAQEYGIEYHSMIKLCTNIEINSSTELPHSLCESCLSDLRTSYDFKLRCQFSQNKLTKLVHNDKASEQIALNLVDSITSQIDPFGTEITIPNNVSKISFDVDTTFDNDEFIDSDNEPLAMPVQIVDVQNIKQENDNNANPGDTKKNKICPICYKGFTKLYHVKRHLLTHKKQGHPCCICQAIFTREVDLKKHRSKIHGIEIVADKSNDNSLSQKTSVDNSFDSFGIPADEPIPSKQPDNDNQSDEFDESDNEPLVTVIDSHRLTRSNICSPDNNKKSPMKPSHVTRHLSIQEVDKVSCHLCTDVFFGSNDLSEHISTVHPENVVNFKKEDPSCELILETESLRTPVKKRKAEIPVEKSEEVSPDSSKEGNAKWNKKCTICSRVFSKHCHVKRHMKVHEKDPQFSTKIKELEKIQCEANGEKTCVCLICDKEFYRIHLLRQHLLEHNNEDLSARDLTSKMFLFNGIVISEQNIDLNQSVAKLIEEKETSTLVRIINSRGFEMSLSDSETESESDSKEPSTNPRTYQCPLCEQQFTRQHLAFDHMSKQHDGVRFDFACVHCNLSYPDEMSLHRHLQNQCQNERKLLKCVVCNTRFMWEQSLEKHMKLAHESQVDDPHKESKPFQCEVCSKNFSRSEHLTRHKKIHEDTVKRFSCEVCQKSFSRKDNMKSHMAVHTEVKEVVANKHLCVYCGRSFSNSSNLIVHMRRHTGEKPYKCDLCDKGFPRSSDLQCHRRTHTGEKPCLCTICGKGFSRSNKLVRHMRIHTGVRPYKCPHCDRAFTQSNDLTLHIRRHTGDKPYVCGICGQRFIQGTALQNHRRSQGHFEEVNNQETQFSSISVNNPNRVFINTYRVKTDNMPSVSAALRKTSTKQAELDDIISNSIENSLMNESMTTNTVQVKTEDTPLDIVDTNGYQQYQQYHL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-