Sfus011032.1
Basic Information
- Insect
- Sylvicola fuscatus
- Gene Symbol
- su(Hw)
- Assembly
- GCA_026546915.1
- Location
- JANSTS010003689.1:17820-20545[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 6.4e-05 0.004 17.2 0.2 1 20 77 96 77 98 0.94 2 13 0.022 1.4 9.2 0.9 2 23 177 199 176 199 0.91 3 13 0.036 2.3 8.5 0.4 3 23 207 227 205 227 0.97 4 13 2e-05 0.0013 18.8 1.7 1 21 233 253 233 254 0.95 5 13 3.4e-07 2.1e-05 24.4 0.2 2 23 267 288 266 288 0.96 6 13 1.1e-07 6.7e-06 25.9 1.5 1 23 298 320 298 320 0.99 7 13 8.4e-07 5.3e-05 23.1 0.3 1 23 326 348 326 348 0.98 8 13 1.7e-06 0.0001 22.2 3.1 1 23 354 376 354 376 0.99 9 13 1.2e-05 0.00075 19.5 3.2 1 23 382 404 382 404 0.96 10 13 1.8e-05 0.0011 19.0 1.1 1 23 410 433 410 433 0.94 11 13 9.3e-07 5.8e-05 23.0 0.4 2 23 440 461 439 461 0.95 12 13 5.3e-05 0.0033 17.5 0.3 1 23 467 490 467 490 0.97 13 13 1.9e-05 0.0012 18.8 2.5 2 23 496 518 496 518 0.98
Sequence Information
- Coding Sequence
- ATGGTGCGCGCTAGAAAAAGCCAGCGCATTGCCACATCGGCTGCGTCAGACACAGTTATAAATGTCAAAATAAATGCAGATAATGAGATTGAGTCACTGGAGGTAGGCGACATTGAGGCGGACGGCACCGACAGCAAGGCAGCTACCGACGAAGAAGACTTTCAGACGCTAGTTACAGAAGACGGTGACATGGTGGAAATTAAAGTTGAAAATCGCACCGTGATTGAGCACGTCTGTGGTAAATGCGACAAAACATACAAGTCGTTGGGGGCACTTCAACGTCATTTGATACTTTGCCGTGAAAAGGCTCAGTCATCGCCAAACAAGCGGTTGAGAAGTCAAAAGGAACAAGCAGAAGCCAAACAAAGTCCGGTTAAGAAATTACGCAGAAAAGCGACTGCAACGAAAATTAGGGACACCAGCGATTCGGAAAATGAAATGGAAACAGTTGTGCTGAATATGAATGTCGACTCGAAGGTGTGCTTTTGCTGTGACGAAGAATTGGAAACCGCCCATAACGGTCACATCAAATGCGAGGCGTGTCCCAAGTCATTCAAAAGCTTTCCAAGCATCAATAAGCATGTCCATTTGTTGCACTCGGATTCATCGGAGTTTGGTTGTCCATTTTGCAATGCCACATGTCCCAACCAGGCAACTCTCGACCTTCACTTAGAGAGtcatcgccacggcaagccgtacagctgcgtcaactgcggcaaagattttacacgcaaatatcatttggatcgccatctgaactacaccaactgtgactcgtccaagcccaagtcagagttaccgtgccaggtatgcggtaaagtgttttcgcgcaccgacaatttgcgcgaacatttacgcggtcacatcggtcaggcgacacgtcgacgcgactaccagtgtccgcactgcgaaaagtcattctacggatcgtccctgctgaacatccacattcgtacgcacactggcgagaagccgttcccctgcgatctgtgcgaaaagtcgttcccgtccaatggggcactgcgcaagcatcgtcgcatgcacaccggcgaacgaccgtatcgctgcacaatctgcgagcgctgtttctccgccaaggagacgctcaacaggcacatgaaaattcacacaggtgagcgcccacacgtttgtgaaatttgcaacaaaagttttatacagcgaacacaattgcgcgcccatttgtcgcatcacaccggcgacctggagttcgactgcgaccagtgcgacaagtcgttcaacagaaaacagcggctggaggcgcacatcaagttcgaccatgagaatgctgagaagttgccgtgcaagttgtgcgacaaagagttcacgcgtaaggatgacctgcagcgtcatgttgcctcgcacatgggcATCAAAAAGTTCAAGTGCGACATCTGCGACAAAGAGTATGCGACTTCGGCTAGGCTGGAGGCCCACAAATCGACACAGCACCCGAAAAAGGCGCCAAAGTGCAAAATATGCGCGGAAGAATTCAAACAGGTGGACCATCTGATGCGCCACATGCGTACCAAACATCGCGACATATTGCAAGACTTTGTCGGTGACGCCGAGCTGGAGCTTACCGGTACTGTGCTGGACATATCCTCAGTCAATGCGGAAATTGAGGCCGAGCAGGCAGTCTTTGCAGAGGAAGAAGTTCTGTACGACGAAGTGCAGACAATTTCGTCCAATAACAATCAGATTGAAGGAGACGACGAAGAAGAGGTTGAGAGCTATGATGTTCCACTTCTCTACGTCGAGTCTGAAAGCGAGACAAATGATAATACGATTGAAGTTAAATACATTGTCCAAGAAGAGAAAAAAATCAAGCAAGAGGCATCAACGTCTGGAACCGTCAAAAAGGATGAAGCGAAATCACCAACTGCAGTGGTCCAACAACAAAAAAGTCTTAAAAAGATGAAAGAAGATCAAAAGAAAATGCAGGCGGACAAGTTGAAGCAACAAAAAGAAGTGTTGAAGAACGAAAAGTTGGAAAAGGCAAAATCCGCCAAGGAAAAGGAAATGGAAAAAGAAAAGTCGGCCGCCTTAAAACGGAAACAAAAAGAAGCTAATGAGCTTAGGTTGGAAATGGAGAGGAACGAGGCGCAAAAGAAAACGGAGAAAGAGACCGAATCGAAACGTAAAGCGTCACAAAGCGCTGCCTTGAAGCGCGAAGATCCAGATGATGAGATGCCGATATTTTTGGACGATGCCACATTGAAGGAGAGCGTTTCGCAGCTGCTCAGTATGTTGGTTGATGAAGAAACACTGAGCAGCTTCGGGTGGCCCAGAGCACCCGTGGAGGAGGTGTTGAGCTCTGTTATCGAGCAATGTGGACAAACGCCGGCTGATTACAACAGCACATCTGACTATACAACGAAAATCCGCGAAAATGCTAAACTGCTGTTCACGGTTGTCATTGACAACGATTTTATCAAGACACTTCTCAACAATCATACTGTAGATGAGGTCATTGTCCAGGTCTTGAAGCTGGCACAAACAAAATCTTTGTAA
- Protein Sequence
- MVRARKSQRIATSAASDTVINVKINADNEIESLEVGDIEADGTDSKAATDEEDFQTLVTEDGDMVEIKVENRTVIEHVCGKCDKTYKSLGALQRHLILCREKAQSSPNKRLRSQKEQAEAKQSPVKKLRRKATATKIRDTSDSENEMETVVLNMNVDSKVCFCCDEELETAHNGHIKCEACPKSFKSFPSINKHVHLLHSDSSEFGCPFCNATCPNQATLDLHLESHRHGKPYSCVNCGKDFTRKYHLDRHLNYTNCDSSKPKSELPCQVCGKVFSRTDNLREHLRGHIGQATRRRDYQCPHCEKSFYGSSLLNIHIRTHTGEKPFPCDLCEKSFPSNGALRKHRRMHTGERPYRCTICERCFSAKETLNRHMKIHTGERPHVCEICNKSFIQRTQLRAHLSHHTGDLEFDCDQCDKSFNRKQRLEAHIKFDHENAEKLPCKLCDKEFTRKDDLQRHVASHMGIKKFKCDICDKEYATSARLEAHKSTQHPKKAPKCKICAEEFKQVDHLMRHMRTKHRDILQDFVGDAELELTGTVLDISSVNAEIEAEQAVFAEEEVLYDEVQTISSNNNQIEGDDEEEVESYDVPLLYVESESETNDNTIEVKYIVQEEKKIKQEASTSGTVKKDEAKSPTAVVQQQKSLKKMKEDQKKMQADKLKQQKEVLKNEKLEKAKSAKEKEMEKEKSAALKRKQKEANELRLEMERNEAQKKTEKETESKRKASQSAALKREDPDDEMPIFLDDATLKESVSQLLSMLVDEETLSSFGWPRAPVEEVLSSVIEQCGQTPADYNSTSDYTTKIRENAKLLFTVVIDNDFIKTLLNNHTVDEVIVQVLKLAQTKSL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -