Sfus013846.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Sylvicola fuscatus
Gene Symbol
-
Assembly
GCA_026546915.1
Location
JANSTS010006805.1:502-3135[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.0073 0.46 10.7 1.0 1 23 117 139 117 139 0.96
2 16 0.0035 0.22 11.8 3.4 1 23 144 167 144 167 0.95
3 16 0.00022 0.014 15.5 0.5 3 23 183 204 182 204 0.96
4 16 0.0017 0.1 12.8 0.4 1 23 300 323 300 323 0.97
5 16 0.0012 0.077 13.2 8.8 1 23 328 350 328 351 0.96
6 16 0.00041 0.025 14.7 0.8 2 23 366 388 365 388 0.96
7 16 1.1e-05 0.00069 19.6 1.5 1 23 435 457 435 457 0.94
8 16 1e-06 6.3e-05 22.9 3.5 1 23 463 485 463 485 0.97
9 16 4.4e-05 0.0027 17.7 1.8 2 23 492 513 491 513 0.97
10 16 0.00076 0.047 13.8 4.2 3 23 530 550 528 550 0.96
11 16 4.9e-05 0.0031 17.6 2.9 3 23 557 577 555 577 0.98
12 16 5.5e-07 3.5e-05 23.7 0.9 1 23 583 605 583 605 0.96
13 16 3.7e-06 0.00023 21.1 2.2 1 23 611 633 611 633 0.98
14 16 4.1e-07 2.6e-05 24.1 1.9 2 23 640 661 640 661 0.98
15 16 2.8e-07 1.7e-05 24.6 3.8 1 23 667 689 667 689 0.99
16 16 0.00052 0.033 14.3 2.3 1 23 694 717 694 717 0.96

Sequence Information

Coding Sequence
ATGGATTTATCAGATCTAAAATCATGTTGCATTACGTGCACCGCCAAGAACAATGGCTCCAACATGATATCAATATTTAAAGCTGAGATTATAGAAGGCGAATCGACGTGCTACAGTCGAATGTTATCGGCGGTTTTGAATACAGTGATATCAGCCGAGGATCAATTGCCCAAGCAAATATGTGTCAAATGCATTGGCCTGATCCGCAAGTTCTTTTCATTTCAAATCCAGTCACTGAAGGCATTGCGAAAGATACGGTCAGCAATCGAATCCGGTTCGAAAAATGATGAAGAATCGTTTAAAAATGAAACCAATCATAAAAGTACACAGACTGAAGAAATTGTCATTCATCCATGCGAATTTTGTGAATTGATTTTCGACACTGGTAAAGAATTAAAGAAGCATCGAGTGACCCACAATACAAAAGACTTTAATTGTCGTTTCTGCAAGAAAAAATTTTGCCGGCTGGGGACATTACAAGGTCATCTGATTTCGGTTCATCCCGAATCGCAAATGCGGATGTCATCTTTTGCCAAGAAAAATTTCTGTCCGTTGTGCTCGAAAATCTTCACGCGTCCGGAACGAATGCGTCAGCACATGCAAAATGCCCATAAGCATCAACGTGGTGGTATGGATTTGAGGCGTTATGTGGAAGAGGTTAAAATGGATTCGGACGAAGAGGAAAATGAAGAGCCGGATGAAAAATACATTCTTCCTGACTATATAGAGGAAGAAGATCAAGAAAATCGAGTATCTGATTTAAAAGTTAAATCGGAAGACTTAATGGATTGCATTGAGGAAGTACTGACAGATGACGAAGAGAGTGATACGCCAACGATACAATCTGATTCCAGTGATCTTTTTGATCTGGAAAAGACGATTGTTGACAAAATCATTTTTCCCTGTGAATACTGTGACTTAGTTCTCGACACTGGTCGTGAGTTAAAGAAACACCGAAAATCTTCTCATGACTCCAAAGACTTTACATGTCGATTCTGCAAGAAAAGCTTCTGTCGTCTTCGAAGCTTACAAAGCCATCTTCTAAAGCATCATCCTGAATCTAAAATGCAACTATCCAGTTTTGCGAATAGTAACAAGTGTCCTTTTTGTGACAAATTGTTTGCACGTTCTGAAACCATGCGCGAGCATCTGAAAAATTTACATAAGGAACAATACTTTACAAATCTGAATAGATCACATGAAAACGAAATAGAAGCAATAGAGAACATTAAAAGTGATTCAACAGAAGCAATGGACAGAATGATTGTAGAAGATGATGACTTTAGTGGAGTGCCCACCTTGTTCGCTTGTGGGTACTGCAAGAAAACATTTTCGAATAAAAATAACATGCGCCGACACGAGATAGAGCACGCATCCAAGAAGCTACACGAATGCCCTTCGTGCGACAAAGTATTCAAACGCTCTGACCACCTTAAAAAACATGTTGAGTCCCACTCGGATCGAAGTAACTTACGGTGTCCCACATGTGGGCAATACTTTCGACGTATCAAGAGCTTCCAAGATCATATGAAGAAACATGATGCTGACGAGACAACGCAGCCTGACGATTACTCGTCGTCTATGCACTGCACCATATGCAACAAGTCCTACACGGGATTAAAGTacttcaagactcacatgaaaaatcacgagacaccatcattcggctgcaccgagtgcaacgccatgtttcatctgaaatcgcagctgacaaagcacatgcgcacgcactccggcgccaatcgctacttgtgctcggagtgcggcaaatcgttcgccaaatctgactatttgatgacgcatttgcgacgtcatcgtggcgagaagcagtacaaatgtcgcttctgtgacaaatcgtttatttcgtccagcgagctgcgtctgcacgagcgctatcacactggcgagaaacttcgtacgtgctgcatctgtggcaaaggattctacagagctagcacacttaacgtgcacatgaggacgcacactggcgagaagccgtacaaatgcccgcactgcgatcgctgttttgcgcaaaggaacgacctcaacgctcacgtcagacgacacacgggagaacgattcacctgtgaggtttgcggaatgggattcatccatggctacCATTTGACAGCGCACAAGTTGAAGAAGCACAACATTGTGGTTGACGTAAGGAATGGGCGTATCACACGAAATATAAAGAAGGAACCGACGGATTCGAGCGTCATCGAAGAAAACAATGTTGAAGATCCTCCTCCCGCCACTAAATTAGAATACAATTTTGTTAATGATAACATTGAAATAAGGATATTGCCGCTTCTGTGA
Protein Sequence
MDLSDLKSCCITCTAKNNGSNMISIFKAEIIEGESTCYSRMLSAVLNTVISAEDQLPKQICVKCIGLIRKFFSFQIQSLKALRKIRSAIESGSKNDEESFKNETNHKSTQTEEIVIHPCEFCELIFDTGKELKKHRVTHNTKDFNCRFCKKKFCRLGTLQGHLISVHPESQMRMSSFAKKNFCPLCSKIFTRPERMRQHMQNAHKHQRGGMDLRRYVEEVKMDSDEEENEEPDEKYILPDYIEEEDQENRVSDLKVKSEDLMDCIEEVLTDDEESDTPTIQSDSSDLFDLEKTIVDKIIFPCEYCDLVLDTGRELKKHRKSSHDSKDFTCRFCKKSFCRLRSLQSHLLKHHPESKMQLSSFANSNKCPFCDKLFARSETMREHLKNLHKEQYFTNLNRSHENEIEAIENIKSDSTEAMDRMIVEDDDFSGVPTLFACGYCKKTFSNKNNMRRHEIEHASKKLHECPSCDKVFKRSDHLKKHVESHSDRSNLRCPTCGQYFRRIKSFQDHMKKHDADETTQPDDYSSSMHCTICNKSYTGLKYFKTHMKNHETPSFGCTECNAMFHLKSQLTKHMRTHSGANRYLCSECGKSFAKSDYLMTHLRRHRGEKQYKCRFCDKSFISSSELRLHERYHTGEKLRTCCICGKGFYRASTLNVHMRTHTGEKPYKCPHCDRCFAQRNDLNAHVRRHTGERFTCEVCGMGFIHGYHLTAHKLKKHNIVVDVRNGRITRNIKKEPTDSSVIEENNVEDPPPATKLEYNFVNDNIEIRILPLL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-