Sfus005909.1
Basic Information
- Insect
- Sylvicola fuscatus
- Gene Symbol
- lolal
- Assembly
- GCA_026546915.1
- Location
- JANSTS010008406.1:24547-44614[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.1e-11 2e-08 33.5 0.0 2 39 515 553 514 557 0.89 2 4 1.5e-13 2.6e-10 39.5 0.1 2 39 569 606 568 609 0.94 3 4 3.7e-18 6.6e-15 54.2 0.0 1 45 623 668 623 668 0.98 4 4 2.1e-20 3.7e-17 61.4 0.0 1 42 675 717 675 719 0.97
Sequence Information
- Coding Sequence
- atggcagcaacagacgcccaccaatatttcagcttgcgctggaataactaccaaagcaacatgacctcagtgttccaccaattgctggaagctcagtcctttgttgatgtcacgctggcatgcgaACACAACACCTTACGAGCACATAAGgttgttttgtcagcatgttcagcatactttaagaagctgctgctcgacaatccatgcaagcatccaacgataatactgccggcggaagtcaactttactgacctccaatccatcattgaattcgtttatcgcggtgaaattgacgtctcagaagcagAGTTACAGGGTCTGCTACGAACCGCCGAACAACTGAAGATTAAAGGTCTCTGCGAAGTGACTGAAGTGTCGTCCACATCGTCACTAATTTCACAATCAGCTGGAGCCCAACTAGCCGGCGACACCGCCACAATCATATCGAGCGGCCCACTCTATCACCAATCGATAGTATCAGCCGCTGCACAAGACCAACCGCCACCGAACAAACGCATCCGTACACGCCTGATAAAGTCACCGGAGAAACTATCGGCACCACCAATTGCCAGTCAGTCGCCCACGAAAGTTGACACAGCCGACACAAGCTCCTCTCCCAGTGTCTCCacatcgacgactgcatcgtccagcggcggcacgacgacgctgttagccggtaacattaagcaggagtaccgacagcagccacagcaacagttgcagaacagcaacagcaacaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAATCACAGCCATTCAACGAGTAGCAGCAATCCTGTAGTGGTGCTGGAGCAGCGCGTAGTAACACGAGAATCTAAAGACAAAACAATGACGAGTCTGGGTATGGGAATGAACGGCAGCATAATGGGGGTGTCAATGGGCTTTCTGGACTTTGCGCCAGAGCCGCCAGCCCCATCAGCCACGCCAGTTACAGAGCACGTCGATCTGAACTGTCCACCAAGCAATGACACACGTGACCTCTCCAATCCGACGGAGGCGCTTGATATTGACAATCATATGACACAGCATTCCACAACGTTACATCATTTAAATCACCATCCCCACCATCATCACCACCACCAACATCATGCACACCCCACACAAGACTATGGCAATCCGCCACACCAGCAGAGTCAAGGTTCCACAATTGAGCTGAAATCGCCGTCAGGATGCGGCTCATCGTCGTCAGCATCCTCAGTCGGTGGAACCCGTCAAAATATAACTGCCATGGAGATCGATCCAATTAATATCAAGCACGAGCAGGGCATGATTATTACACCGGAAATCGTAACGATGATGACATCCGGCCAGATGGAAATGTACAGTTCCGATACGTCGGAAGACACAAAGATGAATATGAGTGCGTCACCGAGTCCGGGTACCCAGTACACGAATCTGTCCAATCACACAGAGTCCAAGGGACAGGGTGGTCCCAAGACGTGGACACAAGAAGTAATGGAGGCGGCGTTAGACGCCCTGCGAAATCACAATATGAGTCTGACGAAAGCGTCTGTGACATTCGGCATACCGTCGACGACGCTGTGGCAGCGTGCCCACCGTCTGGGCATTGACACGCCAAAGAAGGAAGGCACCTCAAAAACATGGAACGAAGACTCGCTGAACAATGCACTCGAAGCTCTGCGCAACGGTCACATATCGGCAAACAAGGCGTCCAAGGCGTACGGCATACCATCGTCGACACTGTACAAGATAGCCAGACGCGAAGGAATTCGTTTGGCGGCGCCTTTCAATGCGGCGCCCACCACATGGACGCCAGAGGATTTGGAACGTGCTCTTGAGGCAATACGAGCGGGTCACACGTCTGTGCAGAAGGCCAGCACTGAATTCGGCATTCCGACTGGAACGCTGTATGGTCGTTGCAAACGTGAGGGCATTGAATTGTCGCGATCTAATCCAACCCCTTGGTCTGAGGACGCAATGCTGGAAGCTCTGGACGCAGTGAGAAATGGTCAAATGTCAATTAATCAGGCGGCAATCCACTATAATCTTCCGTACAGTTCTCTGTATGGTCGATTTAAGCGTGGCAAGTATGAGATTGGAGTTGGCGGCAGTGATAGCCTGAACAACTCGCTGCACGATCAAAGTCCTGACAATTCGCAACATCACTATCAGTACGGCAGTCCAACGATGCATCAACAACAACAACCACCGCCACAGCATCAGATAATGGTGGGATCACCGCCGCCGCCACATTCACTTTCAGTGACGGGGGGCCAGTCAACCGGTGCGCCCGGCATCAACAGCGTCGTTCAGCACATCTACGAGCAGCGCAGTTGA
- Protein Sequence
- MAATDAHQYFSLRWNNYQSNMTSVFHQLLEAQSFVDVTLACEHNTLRAHKVVLSACSAYFKKLLLDNPCKHPTIILPAEVNFTDLQSIIEFVYRGEIDVSEAELQGLLRTAEQLKIKGLCEVTEVSSTSSLISQSAGAQLAGDTATIISSGPLYHQSIVSAAAQDQPPPNKRIRTRLIKSPEKLSAPPIASQSPTKVDTADTSSSPSVSTSTTASSSGGTTTLLAGNIKQEYRQQPQQQLQNSNSNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNHSHSTSSSNPVVVLEQRVVTRESKDKTMTSLGMGMNGSIMGVSMGFLDFAPEPPAPSATPVTEHVDLNCPPSNDTRDLSNPTEALDIDNHMTQHSTTLHHLNHHPHHHHHHQHHAHPTQDYGNPPHQQSQGSTIELKSPSGCGSSSSASSVGGTRQNITAMEIDPINIKHEQGMIITPEIVTMMTSGQMEMYSSDTSEDTKMNMSASPSPGTQYTNLSNHTESKGQGGPKTWTQEVMEAALDALRNHNMSLTKASVTFGIPSTTLWQRAHRLGIDTPKKEGTSKTWNEDSLNNALEALRNGHISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGHTSVQKASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMLEALDAVRNGQMSINQAAIHYNLPYSSLYGRFKRGKYEIGVGGSDSLNNSLHDQSPDNSQHHYQYGSPTMHQQQQPPPQHQIMVGSPPPPHSLSVTGGQSTGAPGINSVVQHIYEQRS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01383022;
- 90% Identity
- iTF_01383022;
- 80% Identity
- iTF_01383022;