Scin002675.1
Basic Information
- Insect
- Sylvicola cinctus
- Gene Symbol
- stc_1
- Assembly
- GCA_963854165.1
- Location
- OY974082.1:33772828-33775968[-]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 1.9 1.4e+04 -4.0 1.6 15 19 316 320 315 320 0.81 2 14 0.079 6e+02 0.4 0.4 4 10 349 355 348 357 0.94 3 14 2.7e-06 0.02 14.7 15.7 3 19 362 378 361 378 0.93 4 14 0.83 6.3e+03 -2.9 0.7 5 10 403 408 403 408 0.93 5 14 2.3e-06 0.017 14.9 7.4 1 19 414 432 414 432 0.97 6 14 1.8 1.3e+04 -4.0 17.6 1 19 472 490 462 490 0.91 7 14 4.1e-06 0.031 14.1 12.5 4 18 538 552 531 553 0.86 8 14 0.0074 56 3.7 8.2 1 11 593 603 593 604 0.95 9 14 1.5e-09 1.1e-05 25.1 13.3 1 18 620 637 620 638 0.97 10 14 0.15 1.1e+03 -0.5 0.9 5 10 666 671 664 671 0.96 11 14 2 1.5e+04 -5.4 9.5 9 18 684 694 674 695 0.78 12 14 6.3e-05 0.47 10.3 10.7 1 15 731 745 731 756 0.88 13 14 0.00013 0.97 9.3 10.9 3 19 764 782 763 782 0.92 14 14 0.45 3.4e+03 -2.0 0.5 7 12 797 802 791 802 0.71
Sequence Information
- Coding Sequence
- ATGGCTGAGAACAATTCGAATATTGGGCAATATTATGATGGTGAGGGGtacattaatttcaatcagTTTGTATCTCAACACAATCTCAGTCAATATTATCCTCCGCAACATCAGTTTGACATGAGCGTTCCAGTTTTCTCAAATCAAGTTCAATTTGCTGAAGATTTTGTTTACAACAATTCCAATTATCCAGTATTTCCAAGTATTGAAGGGTTTGATCAGGCACATATTGTTCAGGCCTCTAACCTGGTTCCGACAGCCTTAGAATTTGTGCCTAGAAATAATGTATCGGAATCATCTTTTGTTTGTGATCAATATTTACCGGATCAAAAAGAGGATGATGTAAGACAGGAGGTGAATTCTAGTAGTAATACAAATCCTAGGAAGACAGGagctgtcaaaaaaaattctcatcaAAACAACAATGATTTTAGCAACCATGTAGGTCATGAAAATGGACGAAACTTTGGTAGCGGCCGTCATGATCGTCGTAATATGCGCCGAAGGGATGACGgatttaatcataataaatcCTTTAATAGTAACGAAAATGTATATCGTGGGCGCAAAATGGAAGAAGGCTTCGTTGCGGTACCTAAAAGACAAAATGAAGGAGACAAGCGTGAAAATTGGCGCAAAAATGTCATGTCATCTAAATTGGGTCAGAATGAAGAGTTTTCAGAACGTGGCCACGTATCACCACATATACAGTTTAAAGCTGatcgcaatttaaaaaaacattgcgaAAGTGTCAATACTGAAAAATATTCGCAACGAGAAAAGTTAATTCAAGAAATAGATTCCGGGAAACTTGAGTGCCTAGtttgttgtgaaaaaataaaaccgtttCACTCGACTTGGTCATGCTTAAATTGTcatcatatttttcatttaaattgcacaattaaatGGGCAGCAAGTTCTAAATCCGAGGATGGCTGGCGTTGTCCTGCATGTCAAAATGTCACTAAAAGTGTACCCCGAGATTACTATtgtttttgtggaaaattattaaatccgGCTTATAATCGAAACGATGTGGCACATTCATGTGGAGAGTTGTGCAGCAAAAGTGATGTTTGTATGCATCCTTGCACATTGCTATGTCATCCGGGACCATGCCCACCTTGCCAGGCAAATGTAACACGGGAGTGCGgatgtgggaaaaaaaaatcggttgTACAATGCTCCGTTAAAACTGATTTAAAGTGTGATGAGATATGCGGCAAAACATTGAACTGTGGAATCCATTTCTGTAAATCTAAATGCCATCTGAACGAGTGTGATAGTTGCAAGCACACAGTACATCATCAGTGCTTTTGTGGAAAAGAAAATAAGGAAGAAGATTGCaccattgaaaataataagacTGTAAATTTTTCTTGCGGTAAAATCTGCAATAATCatcttaaatgcaaaaatcatTTCTGTCGAGACATCTGCCATCCACGTGAATGTCATGCTTGTCCTAACATGCCAGAAGTGGTTACATCTTGCCCATGTGGAAAAGCACCCATTTTACCCGGAGATCGAAAGGTTTGCACTGATCCTATTACTGTGTGCGGAGGTGTGTGTGGCCGCCAGTTAAAATGTGGTCAACCGAGTGCGCCGCATCGGTGTTCTTCCCGATGTCATATTGGCAATTGTCCCCCGTGCAACAGAGAGACTGCAGTTAAATGCCGTTGTGGCCACATGGATCAAATGATTAAATGTAAACTTCTTAGCACACGTGCTGATGATGCTCGTTGTAAAAAGCGTTGCACTAAACGACGTAACTGTGGAAAACACAAGTGTAATCAGGATTGCTGCATCGATATTGAGCATTTGTGCCCAATTTCTTGTAACTTTACTTTGTCTTGTGGCAAACACAAGTGTAATCAGACATGTCACAAAGGAAAATGCTTACCTTGTTATAGGACATCATTTGACGAGCTACACTGCGAATGTGGCGCCGAAGTCATTTACCCACCAGTACCTTGTGGAACAAAGAAACCAACATGTGAGCGTCCTTGCTCGCGTAATCACTTATGTAGCCATCCAGCCCAGCATAATTGTCATTCAAGCTCTAGTTGTCCTCCGTGTATGGCATTTACAACGAAGTACTGCCATGGAAAGCATGAACAACGAAAGACTATTCCATGTGCACAGGAATCATTTAGTTGTGGACTTCCATGCAATAAGTCACTGCGTTGTGGACGCCATAAGTGCATTCGCATATGCCATGAAAATGTTTGCGAGCAGACTGATGATGTTTGCAAGCAAAGTTGCAATAAACAGCGTATATCTTGTACTCATAAGTGTGCAGCACCTTGTCACGATACCGATTGTCCAGATATCCCGTGTCGCGAGCTAGTGGAAGTATCGTGTGTATGTGGAAATCGCAAGCAAACGAGGACTTGCCATGACTTTTCAAGAGACTATCGCCGTATTGCTACCGCACAATTAGCCTCTTCAATGCAGGAAATGCAAAATGGTGGTTCTGTAGAACTTAAAGATATTTTTGGACCgatcaaaaattgtaatactaaaactttgGAATGTAATGATGAATGTCAGGTTATACAACGAACAAAGCGTATGGCTATTGCTCTACAAATCCGCAATCCTGATAACGCATCAAAGTTTCATCCCAAGTACTCGGAGTTTATTCGTTCATGGGCCAAAAAGGATCCTGCATTAGTTACTATGATCTATGAGAAACTAACTGAACTTGTGAAACTGGCGAAagaaagtaaacaaaaatctCGCAGTCACTCATTTCCAGTAATGAAACGGGATAAACGTCAATTAGTTCATGAATTGTGCGAGATGTTTGGTGTTGATTCCGAAGCCTATGATGCAGAACCAAATCGCAACGTAGTTGCCACAGCACAAAGAGATCGTTCTTGGTTGCCATCAATGAGCGTTATGGGAATGCTAGCTCGCGAAAGTGGTCAACGTCGTATTCCAATACCAAACAACAATGCCTGGAACCTTAAAAAATAG
- Protein Sequence
- MAENNSNIGQYYDGEGYINFNQFVSQHNLSQYYPPQHQFDMSVPVFSNQVQFAEDFVYNNSNYPVFPSIEGFDQAHIVQASNLVPTALEFVPRNNVSESSFVCDQYLPDQKEDDVRQEVNSSSNTNPRKTGAVKKNSHQNNNDFSNHVGHENGRNFGSGRHDRRNMRRRDDGFNHNKSFNSNENVYRGRKMEEGFVAVPKRQNEGDKRENWRKNVMSSKLGQNEEFSERGHVSPHIQFKADRNLKKHCESVNTEKYSQREKLIQEIDSGKLECLVCCEKIKPFHSTWSCLNCHHIFHLNCTIKWAASSKSEDGWRCPACQNVTKSVPRDYYCFCGKLLNPAYNRNDVAHSCGELCSKSDVCMHPCTLLCHPGPCPPCQANVTRECGCGKKKSVVQCSVKTDLKCDEICGKTLNCGIHFCKSKCHLNECDSCKHTVHHQCFCGKENKEEDCTIENNKTVNFSCGKICNNHLKCKNHFCRDICHPRECHACPNMPEVVTSCPCGKAPILPGDRKVCTDPITVCGGVCGRQLKCGQPSAPHRCSSRCHIGNCPPCNRETAVKCRCGHMDQMIKCKLLSTRADDARCKKRCTKRRNCGKHKCNQDCCIDIEHLCPISCNFTLSCGKHKCNQTCHKGKCLPCYRTSFDELHCECGAEVIYPPVPCGTKKPTCERPCSRNHLCSHPAQHNCHSSSSCPPCMAFTTKYCHGKHEQRKTIPCAQESFSCGLPCNKSLRCGRHKCIRICHENVCEQTDDVCKQSCNKQRISCTHKCAAPCHDTDCPDIPCRELVEVSCVCGNRKQTRTCHDFSRDYRRIATAQLASSMQEMQNGGSVELKDIFGPIKNCNTKTLECNDECQVIQRTKRMAIALQIRNPDNASKFHPKYSEFIRSWAKKDPALVTMIYEKLTELVKLAKESKQKSRSHSFPVMKRDKRQLVHELCEMFGVDSEAYDAEPNRNVVATAQRDRSWLPSMSVMGMLARESGQRRIPIPNNNAWNLKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -