Scin013619.1
Basic Information
- Insect
- Sylvicola cinctus
- Gene Symbol
- nfxl1
- Assembly
- GCA_963854165.1
- Location
- OY974084.1:48305298-48310058[-]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.88 6.6e+03 -3.0 1.4 14 19 178 183 178 183 0.86 2 17 0.15 1.2e+03 -0.6 0.8 4 10 214 220 213 220 0.95 3 17 7.1e-08 0.00054 19.7 17.3 1 19 228 245 228 245 0.99 4 17 0.00089 6.7 6.6 15.0 1 18 281 299 281 300 0.97 5 17 1.2 8.7e+03 -3.3 1.8 6 10 325 329 324 329 0.89 6 17 4.7e-09 3.5e-05 23.5 14.7 1 19 335 353 335 353 0.99 7 17 1.2 9.1e+03 -3.4 1.5 13 18 376 382 376 383 0.77 8 17 5.1e-07 0.0039 17.0 8.7 3 18 390 405 388 406 0.91 9 17 1.8 1.3e+04 -3.9 1.6 5 10 429 434 429 434 0.92 10 17 4.5e-05 0.34 10.7 14.7 3 18 442 457 440 458 0.91 11 17 1.1e-09 8.2e-06 25.5 12.1 1 19 467 485 467 485 0.99 12 17 2 1.5e+04 -5.5 20.3 7 18 529 540 513 541 0.89 13 17 0.0009 6.8 6.6 5.4 1 12 553 563 553 563 0.96 14 17 8.6e-05 0.65 9.8 4.7 1 11 634 644 634 645 0.96 15 17 0.73 5.5e+03 -2.7 1.4 14 18 657 661 657 662 0.86 16 17 0.0018 14 5.6 14.4 3 19 674 690 673 690 0.94 17 17 1.4e-06 0.011 15.6 10.1 1 16 742 756 742 762 0.90
Sequence Information
- Coding Sequence
- ATGAATCTATCAACCGCAAAAAGTAGCTCATCCGGCACACGGCCTAACCAATCCACCACATCCCAGCAAGGTGAAGGAAAATCGGCATCTAAAAACAAACCACCCAACCAAAATGAGCCGCCGAAGCGTGACAAATTTAAAGAGGCACGCACTGTACATATGGCGGCTACCCAAAAACATCTCGAAGGCTATCAATCAAGCTCCGACGAAGAGGAATTGGCATGCAATGACATCCTTGATGCCGTGTTCAAAGGCTACGGCAATGACCGCACCAGCCTAgagaaaacattaaactttttGGAAAACACTTTCCAATCCGGTGCGGCAACTTGTTTGATTTGCTTGGGCACTGTCAAGCGCAACGATCCCATTTGGTCATGCGGCAATTGCTACAACTTTTTCCACTTGACATGCATTCAGCGTTGGGCACGTGACAGCCTCGCCCAGCGTCAACTGCACCAAGAGTTGGAAGGCGGCTACTACACCAATCAAGGCGACTACATACCAAAGAAACGCAAAACAGTGATGTGGGATTGCCCAAAGTGTCGCTTTGAATATTTTCCCGATGAGATACCGCGTCAATACGCATGCTTCTGTGAGCAAGAACTTGATCCCAAATACCATCCATGGCTACTCCCACACTCATGCGGTGAAACATGCAACAAACCATTAACACCGGAGTGTGGTCACAAGTGCGTGTTGTTGTGTCACCCGGGACCGTGTCCACCGTGTCCGCAGACAATTCAAAAATCGTGTAAATGTGGACGGTCGCCAATACGAACAATTCGATGCGCCCAATTGGAGTGGACATGCGGCAAAAAGTGTCAGCATACGCTCAAGTGTGGCATTCATGTGTGCAATGGGCCGTGCCACACCAAGGATGAGTGTCCACCGTGTGGTCAGAAAAGTTTGCGCAAATGCGTGTGTGGACAACGTGAAGAGGAACGCATGTGTTCCGATGTGGTTTGGCAATGCGAGCGTACATGCAAAAATCCATTCCCATGCGGATTGCATCGCTGCGAAAAGATTTGCCACAATGGGCCGTGTGGTAATTGTCCAGCGGGTATGCCACGATCATGTCCGTGCGGCAAAGAAATGACCACAGCACCGTGCAGCGAAGAAATTGGGCCATGTGGTGACACCTGCATGAAGATGCTGCCTTGTGAGCTGCATAATTGCGCCCAATTGTGTCACAAGGGCGAGTGTAGCGCCTGTTTGGAGCTGATTGAGAAAAAATGCCGCTGCGGACAGCAATCTAAGGAAATGCCCTGCTCCAAGGTTTTTACATGCAAGGCAAAGTGCAAGCAGATGCGGGACTGCAAGAAGCATCCGTGCAATAGGGTGTGTTGCGATGGTAATTGCCCCACCTGCGACAAGTCGTGCAGCAAAACTCTCTCCTGTGGCAGACACAAGTGCAAGAATCTTTGTCACAATGGGTTGTGCTATCCGTGTCCAGTAAAATCAAAGGTCAAATGTCGTTGTGGCTCAACGGTTATTGAAGTTCCGTGCGGAAGAGAACGCAAAACTAAACCACCTAAATGCAATCAACCGTGTCGtcACCCATCTAAGTGTCACCACACCAATCCGCATCGTTGCCACATCGGCGATTGCCCACCCTGCATCCAATTGTGCTTGCAACCAAACGACACCACTAAATGCGGGCACATTTGCAACAAGCCGTGCCACGACTCGGTTAAAGTAACCATAACGGATAAAAATTTCACACCAGCCGGTCCGTGGGAGCCTAAACCCGAGGTGGTGCAAGTGCAAAAATTGCCCCACCCAAATTGCGACGAACCGATAACAGTCACCTGTCCGGGTGGACACGAAACCGTTGATTATCCTTGTTGGAATTCACGCATAACCAGCTGCGGTCGTGAATGCAATCGCCAACTTAAGTGTGGCAATCACGTTTGTACACTACCTTGTCACGCGGTGCAGGATATAACAACAATGCGACAGGACGAAGATTGCGCCCCATGCGATGAGGGGTGTGATGTTGAGCGTCCGAAAGGATGTATCCATCCATGTGCACGGCCATGTCATGCGCCACCATGTGCTCCGTGCACCGTGCTCATTAAGTCGCATTGTCATTGCGGGTTGTCGCCTATTTTCAACAAATGCGGTGAATTGTATCAGGATGTAGATGAGAATGAAGAGGAGGTGGAGCAACGCATTGAGAAATTAAGAAGATGCGGTAAtcgttgcattaaaaatatTGCGTGCGGCCATCGCTGTTCGGCTCTTTGTCATGTTGGCGATTGCACAGACCCGAATAAATGCAAGAAAAAGGTTAAAGTCTTTTGCGAATGCAAGAGTCgcaaaattgaaacaacatgCGATAAGCAACGCAATGGGTTTGTTTTACCATGCAACGataaatgtaaagaaataCGCTCGGAAGTAGTGCAGGCCCAAGAGGAGAAACAGCGCAAGATAAAGGAGGAGATTGAGATGAAAAATCGCCAAGAGCTGGAAGAGTATGAACGGAAATATGGGCGGAAGAAATTCCGTGAACGTCAGAGGCAGCAGATTATTGAGGAGGAACAAACCGATCAGTTCAAGCGATTGGCTTTCTTTTCGATTGTTCTTGTGGGAGCAGCTGTCGCCATTACTGTATTGTATTTTCCCAATTAA
- Protein Sequence
- MNLSTAKSSSSGTRPNQSTTSQQGEGKSASKNKPPNQNEPPKRDKFKEARTVHMAATQKHLEGYQSSSDEEELACNDILDAVFKGYGNDRTSLEKTLNFLENTFQSGAATCLICLGTVKRNDPIWSCGNCYNFFHLTCIQRWARDSLAQRQLHQELEGGYYTNQGDYIPKKRKTVMWDCPKCRFEYFPDEIPRQYACFCEQELDPKYHPWLLPHSCGETCNKPLTPECGHKCVLLCHPGPCPPCPQTIQKSCKCGRSPIRTIRCAQLEWTCGKKCQHTLKCGIHVCNGPCHTKDECPPCGQKSLRKCVCGQREEERMCSDVVWQCERTCKNPFPCGLHRCEKICHNGPCGNCPAGMPRSCPCGKEMTTAPCSEEIGPCGDTCMKMLPCELHNCAQLCHKGECSACLELIEKKCRCGQQSKEMPCSKVFTCKAKCKQMRDCKKHPCNRVCCDGNCPTCDKSCSKTLSCGRHKCKNLCHNGLCYPCPVKSKVKCRCGSTVIEVPCGRERKTKPPKCNQPCRHPSKCHHTNPHRCHIGDCPPCIQLCLQPNDTTKCGHICNKPCHDSVKVTITDKNFTPAGPWEPKPEVVQVQKLPHPNCDEPITVTCPGGHETVDYPCWNSRITSCGRECNRQLKCGNHVCTLPCHAVQDITTMRQDEDCAPCDEGCDVERPKGCIHPCARPCHAPPCAPCTVLIKSHCHCGLSPIFNKCGELYQDVDENEEEVEQRIEKLRRCGNRCIKNIACGHRCSALCHVGDCTDPNKCKKKVKVFCECKSRKIETTCDKQRNGFVLPCNDKCKEIRSEVVQAQEEKQRKIKEEIEMKNRQELEEYERKYGRKKFRERQRQQIIEEEQTDQFKRLAFFSIVLVGAAVAITVLYFPN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -