Scin013704.1
Basic Information
- Insect
- Sylvicola cinctus
- Gene Symbol
- -
- Assembly
- GCA_963854165.1
- Location
- OY974084.1:49683495-49691157[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.89 45 4.5 0.1 3 12 203 212 202 215 0.90 2 12 0.27 13 6.2 0.4 2 13 227 238 226 248 0.81 3 12 2.3 1.2e+02 3.3 0.8 1 23 255 276 255 276 0.79 4 12 2.5e-05 0.0013 18.9 1.3 1 23 282 304 282 304 0.98 5 12 1.5 77 3.8 5.1 1 23 476 500 476 500 0.95 6 12 3.4 1.7e+02 2.7 0.0 3 12 512 521 511 524 0.89 7 12 0.27 14 6.2 0.4 2 13 536 547 535 557 0.81 8 12 2.4 1.2e+02 3.2 0.3 1 9 564 572 564 585 0.81 9 12 2.9e-05 0.0015 18.7 0.4 1 23 591 613 591 613 0.98 10 12 0.029 1.5 9.2 3.7 2 23 906 927 905 927 0.97 11 12 4.6 2.3e+02 2.3 0.5 1 17 990 1005 990 1011 0.69 12 12 9.5e-06 0.00048 20.2 0.7 1 23 1017 1039 1017 1039 0.97
Sequence Information
- Coding Sequence
- ATGAAAAGAATTTCAATAGGGGTCGAGACATATTTTGATGTGTCCTATACCTATCAGCAGCCATACATTCCGGACAACATTGTCACTGACGATGAATTTTTCGATGTGTACGAggtaaagaaatttaattacaatacaataagCAACGCAAAGTTACCGGGAATCGAAGGACTTCAGAAATTGGATGAAATCAAAGTTTGCAGGGATGAATTACCACTGCAATCTCCCCAGCATGACTTTGCTGAACTTGATTTGGGTATTGATGAAACAGAAAACGAAATTGATGCGAAATCAATAAATGATTCTGAAGATGACGATTTTACGTGGCCTCAAACCATACCGGACGATGTTCTATTCTATGTTCCACCACGAATAAGAAATGCTGCTGATGCAATTAAACCGTGCCTTGAatgtaatcaaattataaGTCTTAAGGATCAAAAGgAACATTACGCCCGATTTCTAAATGAGCCAACATCCGAAGGCGCAGATGTCCCGTACTTCGTCTGTGAAAAAGAAGATTGCATGTATACCACATACAACAAGTGTGCATTTACCAAACATCTGCATGACCACGATAATCCACCAATACAGTACAGAGCATTGTGTTGGATATGTGgacaaacatttacaaatatgGGGGATCACATTGAAAGGAGGCATTCCGATAATTTCATGCCCTGCAAATATTGCAAGAAGATGTTTCCATcgcaaattttaaagttacacGAGAAAAGGTCACACGAGGAACCGAAACATACTTTTGAATGCCAAATTTGTCATAGAACTATATCCGTAggaAATCGTAAACAACATTTAGAAGGGCACATtggctttaaaaaatacaagtgTCAGTTTTGTGGGGTTGAGTTTCGCCAAAAGCACGATCTTAACGATCACATTGACATTCACACAGGACAGCTACGATTTAATTGCCGTTATTGGGTCGAGACATATTTTGATGTGTCCTATACATACCAGCAGCCATACATTCCGGACAACATTGTCACTGTCGATGAATTTTTCGATGTGTACGAggtaaagaaatttaattacaatacaataagCAACGCAAAGTTACCTGGAATCGAAGGACTTCAGAAATTGGATGAAATCAAAGTTTGCAGGGATGAATTACCACTGCAATCTCCCCAGCATGACTTTGCTGAACTTGATTTGGGTATTGATGAAACAGAAAACGAAATTGATGCGAAATCAATAAATGATTCTGAAGATGACGATTTTACGTGGCCTCAAACCATACCGGACGATGTTCTGTTCTATGTTCCACCACGAATAAGAAATGCTGCTGATGCAATTAAACCGTGCCTTGAatgtaatcaaattataaGTCTTAAGGATCAAAAGGAACATTACGCCCGATTTCTAAATGAGCCGACATCTGAAGGTGCAGATGTCCCGTACTTCGTCTGTGAAAAAGAAGATTGCACGTATACCACATACAACAAATGTGCATTTACCAAACATCTGCATGACCACGATAATCCACCAATATCAAAGAACAGAGCATTGTGTTGGATATGTggacaaatatttacaaatatggGGGACCACATTGAAAGGAAGCATTCCGATAATTTCATGCCCTGCAAATATTGCAAGAAGATGTTTCcatcacaaattttaaagttacacGAGAAAAGGACACACGAAGCACCgaaaaatacttttgaatGCCAAATTTGTCATAAAACTATGGATAAggCAAGTCGTGGAGCACATTTAGAAGGGCacattggttttaaaaaatacaagtgTCAGTTTTGTGGGGTTGAGTTTCGCCAAAAGCAGGATCTTAACGATCATATTGACATTCACACAGGACAGCTACGATTTAATTGCCGTTATTGTAAGGAATCAATGACACGAATGCAACGAAGATTCCACGAGAAGCATCTGTATGAGCAATGCACCGGTATTGAAGTGATTGCAACCACGGAAAAAGTGTCGAGGAACTACGTTCCATTGGAGCTCTGCACAGTGTGCTATGAAGCGTGTGtgacatttaacaattttcggGCGCAATGCAAACTAAGTGATGACACTTTTAAGCTGTGGACATTCACCGATGGGCCGAGTAGCGCATTTTGTGTGTCTAGCATTTGGCGGAAACCACTGGATTTGATGCAGGTTGACACCGACGATGAGGAGCAATTGTATGATGTGTACGAAGTGGAAGATGTTATTAAACAACTGGAGTTCGATAGCCCCCCTGTGGTTGACATCAATGTTTCCCATATTCCGCCTTATGAAAGGAGTAATGTGTCCCTTTGTGAATTTGATTCTGAGAGTGAttcttttgaaaatgaatatcTTATGGATTCTGAAGACGATTCTCCGGTATTGAAgacaaaaagtaatttaaagcCAACTAACGATGTTTCGAAACGTGATCCGAAGAACGACGCCGAGAAAAAGGGGAACacaaatggtttaaaaaataaagtaaatttagaAGATCGATTTTTTGAAGATGATTTTGTGTGGCCCTTTCCGGATGAAGAGAAAATTTGTAGTTATATTTATAATCTTCCTTGCACAAATGGATTAGTGATGGCGAAAGAAAAACCTCCAACACCTGAAGAAGAAACATGCGCTGAGTGtaatttaacaatgaaatATCGGGAACGCAAGCAACATTATGATCGTTGGCGTCAAGATATCGTTCCGGAAGGCAACACAATTGATTACCAGTCGtgtgaaaaatgcaaattcacCTCCTATAATAAGTGTGCTTTAACTGAGCACATGCGGCTTCACATCAATCCGCCAAAGCATCTTCAACTTTGCTACATTTGCGGAGAGCTTCGCGGGAAACTGTCTGATCATTTGGAAAACAAACATTCAAACATTCCCCCCAAACTTTGTACACTTTGCGACACAATGATTCCCCATCAGAGTTATGAGTATCACATGAAAAATACTCACAAAGTCGGTATTGTGACGTTTGAATGCCTGATTTGCcacaaaatgattaattcagAAAAACGCCTAATGCATCTGGATAGTCACGATCAAGAAAAAAAGCACAAGTGTGACATTTGTGGGAAGGCGTTCCGTAAACATGCTGATCTGGCCGATCACATCGATATTCACACAGGACTGAAGCGATTTTTCTGTCGGTTTTGTGGTGAAAACATGACACGCATGCAACGCCGATTTCATCAGAAAGTTTGTGCCTCTAATCCCAACAGGGAATCTCCAGCACCTGCGAAGAAGGGTCGGAGAAAGAAGATGGTGGTCCAAATACCATCTACTGTGGCTTCAAATAGTGAGGAACAAATTGACGAAATGGACTCAGTTGAAAACACAATGGATAATAGCATGGAATATACCGCCGACACAGTTGAGTTTGGCGAAGAAGAGCTGGTCGAGGAgactatttatgattttgagTTTGAATCGGAAAACTATGAAATTCTTAATGACATTATGGACTAG
- Protein Sequence
- MKRISIGVETYFDVSYTYQQPYIPDNIVTDDEFFDVYEVKKFNYNTISNAKLPGIEGLQKLDEIKVCRDELPLQSPQHDFAELDLGIDETENEIDAKSINDSEDDDFTWPQTIPDDVLFYVPPRIRNAADAIKPCLECNQIISLKDQKEHYARFLNEPTSEGADVPYFVCEKEDCMYTTYNKCAFTKHLHDHDNPPIQYRALCWICGQTFTNMGDHIERRHSDNFMPCKYCKKMFPSQILKLHEKRSHEEPKHTFECQICHRTISVGNRKQHLEGHIGFKKYKCQFCGVEFRQKHDLNDHIDIHTGQLRFNCRYWVETYFDVSYTYQQPYIPDNIVTVDEFFDVYEVKKFNYNTISNAKLPGIEGLQKLDEIKVCRDELPLQSPQHDFAELDLGIDETENEIDAKSINDSEDDDFTWPQTIPDDVLFYVPPRIRNAADAIKPCLECNQIISLKDQKEHYARFLNEPTSEGADVPYFVCEKEDCTYTTYNKCAFTKHLHDHDNPPISKNRALCWICGQIFTNMGDHIERKHSDNFMPCKYCKKMFPSQILKLHEKRTHEAPKNTFECQICHKTMDKASRGAHLEGHIGFKKYKCQFCGVEFRQKQDLNDHIDIHTGQLRFNCRYCKESMTRMQRRFHEKHLYEQCTGIEVIATTEKVSRNYVPLELCTVCYEACVTFNNFRAQCKLSDDTFKLWTFTDGPSSAFCVSSIWRKPLDLMQVDTDDEEQLYDVYEVEDVIKQLEFDSPPVVDINVSHIPPYERSNVSLCEFDSESDSFENEYLMDSEDDSPVLKTKSNLKPTNDVSKRDPKNDAEKKGNTNGLKNKVNLEDRFFEDDFVWPFPDEEKICSYIYNLPCTNGLVMAKEKPPTPEEETCAECNLTMKYRERKQHYDRWRQDIVPEGNTIDYQSCEKCKFTSYNKCALTEHMRLHINPPKHLQLCYICGELRGKLSDHLENKHSNIPPKLCTLCDTMIPHQSYEYHMKNTHKVGIVTFECLICHKMINSEKRLMHLDSHDQEKKHKCDICGKAFRKHADLADHIDIHTGLKRFFCRFCGENMTRMQRRFHQKVCASNPNRESPAPAKKGRRKKMVVQIPSTVASNSEEQIDEMDSVENTMDNSMEYTADTVEFGEEELVEETIYDFEFESENYEILNDIMD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -