Scin012525.1
Basic Information
- Insect
- Sylvicola cinctus
- Gene Symbol
- -
- Assembly
- GCA_963854165.1
- Location
- OY974084.1:33908770-33910567[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 5 2.5e+02 2.2 0.2 3 23 3 24 2 24 0.90 2 9 6.8 3.5e+02 1.8 0.5 1 13 124 136 124 137 0.86 3 9 2.9 1.5e+02 2.9 1.6 2 23 155 176 154 176 0.95 4 9 1.8e-05 0.00091 19.3 0.3 1 23 184 206 184 206 0.96 5 9 0.00015 0.0075 16.4 1.1 2 23 222 244 221 244 0.97 6 9 0.00022 0.011 15.9 0.5 1 23 250 272 250 272 0.97 7 9 0.0015 0.077 13.3 0.1 2 23 279 300 278 300 0.96 8 9 6.9e-06 0.00035 20.6 0.4 1 23 306 329 306 329 0.98 9 9 1.2 59 4.2 0.4 3 23 338 358 336 358 0.94
Sequence Information
- Coding Sequence
- ATGTTTTGCAGTTCCTGTATGGCCCCATTTGATTCCATTGATCAAGTTAAGGAGCACATGACTAAAGAGCATGGCTACATTCCACCGAAACCAAATGATAAAACTGACACCCCACCAGATCAATCGAATCCTTCTGATGATGATAAAGATTCGGATAAAAATAACACAGAAGATGCCAGCGAACAAGATGAAGCAGAGATTGAGGATGATGATGAAATGTTAACGTTAAAGGATGTACGACAGCGGTTGAAAGCTGGATTTGTTCATtcATGTTCATTTAAGTTGTGCCTCTACAAATTCGAATCCGTAGAGAAAAAGGAACACCACGAGTTGTGTCATGCTTCCAAAAATGACGACAAAGTGCGTGACTTTGTTTGCACATTTTGTCAAGCTGAATTTCATAATTGGCGAATATGTTCGGCCCACATTTGGAAGCAACACAAATTAGACATTGATATGTTAAGGTGCTTTCATTGCACGTTTCGTGCTACCCTTCCagttaaaGTTTATCGCCACTTGATAACCCACGGTCAATTCCACGGAAAGCGATTCATCTGCAATGTTTGCTCCAAATCATTTGGACGATACGATCAACTGGAGGCGCACAAAGAAATTCACGCAGCCGGCAAGACAGCAACCACGGATCGTTGGTACTCACAGAAAAAGTGTGAACTTTGTGATAACAATTTCTCCAATGCAAAAACTCTATCGAAACATGTTAAGACggtgcacaataaaattaaaccatttatttgtaatgtttgtaattataaatctGCGAGAAAAGCTACGTGGCAgATTCACATGCGGCAGCACACTGGAGAACGACCTCTAAAATGTAAGACTTGTGACTACGGGGCGGCTGATCCAAGTGCTTTAAGGAAACATGAAGCCAAGCAttcaaataacaaacaatacaaatgcaaCTCCTGCGACGTCAGCTTCATCCAATCTGTTGCATTGAAAGTTCATCTCAAGACTTCACATCCTGAAGAATACGCCAAAATGATTTGTGACCAGTGCAGTTTTGTCTCCATTAATGTGCAACGACTCGAACGACACAAAAAGGATCACCAAAGTGGattggtggtttctgctacatcaaataaaattgacaacgAAGACACTTCGGCTACACCACGAATGCTACCTCCGGAAAAATCGTGCATTGAAATCTCATCCGATTGTTTCCTTCCCCTCGAGAGTACTGATTCAATCGCACATGATAGTGCGTTGGATACGGGCGGTGTCACAATACCTGCTCCCACCGATGATACTCAATTTCCCACATTTATGACGCCTTGA
- Protein Sequence
- MFCSSCMAPFDSIDQVKEHMTKEHGYIPPKPNDKTDTPPDQSNPSDDDKDSDKNNTEDASEQDEAEIEDDDEMLTLKDVRQRLKAGFVHSCSFKLCLYKFESVEKKEHHELCHASKNDDKVRDFVCTFCQAEFHNWRICSAHIWKQHKLDIDMLRCFHCTFRATLPVKVYRHLITHGQFHGKRFICNVCSKSFGRYDQLEAHKEIHAAGKTATTDRWYSQKKCELCDNNFSNAKTLSKHVKTVHNKIKPFICNVCNYKSARKATWQIHMRQHTGERPLKCKTCDYGAADPSALRKHEAKHSNNKQYKCNSCDVSFIQSVALKVHLKTSHPEEYAKMICDQCSFVSINVQRLERHKKDHQSGLVVSATSNKIDNEDTSATPRMLPPEKSCIEISSDCFLPLESTDSIAHDSALDTGGVTIPAPTDDTQFPTFMTP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01383210;
- 90% Identity
- -
- 80% Identity
- -