Basic Information

Insect: Sylvicola cinctus
Gene Symbol: -
Assembly: GCA_963854165.1
Location: OY974082.1:13108542-13114412[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.0071 0.36 11.2 1.0 1 23 385 407 385 407 0.96

2 13 0.026 1.3 9.4 0.8 3 22 426 445 425 445 0.95

3 13 0.011 0.56 10.6 0.0 2 23 465 487 464 487 0.93

4 13 0.0032 0.16 12.2 1.7 2 23 505 527 504 527 0.91

5 13 0.0019 0.094 13.0 2.3 2 23 533 555 532 555 0.94

6 13 0.02 1 9.7 1.4 1 23 967 989 967 989 0.96

7 13 0.06 3 8.2 0.2 2 23 995 1017 994 1017 0.92

8 13 0.0014 0.069 13.4 0.6 1 23 1024 1047 1024 1047 0.98

9 13 2.3e-06 0.00012 22.1 1.5 1 23 1052 1074 1052 1074 0.97

10 13 0.0035 0.18 12.1 0.5 3 21 1080 1098 1079 1099 0.94

11 13 0.13 6.5 7.2 0.3 3 23 1117 1138 1115 1138 0.88

12 13 0.0025 0.13 12.6 0.5 3 23 1157 1178 1157 1178 0.90

13 13 0.00027 0.014 15.6 2.9 2 23 1184 1206 1183 1206 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.0071	0.36	11.2	1.0	1	23	385	407	385	407	0.96
2	13	0.026	1.3	9.4	0.8	3	22	426	445	425	445	0.95
3	13	0.011	0.56	10.6	0.0	2	23	465	487	464	487	0.93
4	13	0.0032	0.16	12.2	1.7	2	23	505	527	504	527	0.91
5	13	0.0019	0.094	13.0	2.3	2	23	533	555	532	555	0.94
6	13	0.02	1	9.7	1.4	1	23	967	989	967	989	0.96
7	13	0.06	3	8.2	0.2	2	23	995	1017	994	1017	0.92
8	13	0.0014	0.069	13.4	0.6	1	23	1024	1047	1024	1047	0.98
9	13	2.3e-06	0.00012	22.1	1.5	1	23	1052	1074	1052	1074	0.97
10	13	0.0035	0.18	12.1	0.5	3	21	1080	1098	1079	1099	0.94
11	13	0.13	6.5	7.2	0.3	3	23	1117	1138	1115	1138	0.88
12	13	0.0025	0.13	12.6	0.5	3	23	1157	1178	1157	1178	0.90
13	13	0.00027	0.014	15.6	2.9	2	23	1184	1206	1183	1206	0.95

Sequence Information

Coding Sequence: ATGAAAACAGCTCAAAGATGCATCGTAAAGGGCTGCCCAAACAATATGAGTGTTAATGTCTCACTCTTTAGATTCCCGAAGGAAGCAACACTTTTACGAATTTGGTTAAAACGCATTGGACGAATGGAACTGCttaaaaaatcagcaaattaCCTGTGGTGTAATTGTCGTGTCTGCGGTGCCCATTTTGACGATGACAGCTTTACCACCTATAAACACAATCGAATAAAAGCGGATGCAGTTCCAAGCCTTCTGCTCACTCCTGAAACAAATGAAGATCATGCAGTTACAATTTATGGAGAGCATACAGATGAGGACGATATGGACACAGACGAAGATATTCCATTAAGCAAACTGGAAATACCTGACATGGATGTAGAAGAAAGTATTCCATTAAGCAGGCTGGAAATACCTGTACGCACAGATGATTTGTCTACAATCTGTCGTGGCTGCATGAAAACCTCAAAAAAGAATCTCATCACACTGGAAGACATCACCATGGAGCTGTTCCAACAGTGTACACGCCTGAATGCAAGTTTAAATGATGGCTTTCCAAAAGCAATTTGTGATAAATGTTTAACTTCCTGCCGGTTATGGTCTGAATTTCAAGCGCAATGCATGCATTCCGAACGAGAATTCAAATCCCAGTATGGTTATAAAGATTACGAAGAGCGAATTGAGTCTACCATCGGTGTTCATGAGGCTATGCGCAAAATGCAGTCAGTTAAAGTAGAAGTTGAAGTAGAGCCAAGACTACTCATGGAGAGCTTTGTGTGCAATACATGTGATGAGACACTTTATGGGGATGAATATTTGTCCCACGTTTGTGGGGCTACAGAAGACAGGAAACCGCAAAAAATGCCAGGGAATCCCTTTGATCTGTCTGAAGGCATCAGTCCTCGGGAGGATTCAAAACTTGATGTTAAGAATGATGCCATCAAATTCAAGATTGATTCGTCTGATGATTCAAATGATTGTAATGGTGATGATGGCAAGATGGATGATAGTAGAGATTATGATTCAATTGATGATAGTAAAGGCAAAAGTGATAAAAGTTATGATAGTGAAAATCCAAGCAGCAATATTGACagtgaagaagaagaagaatgtGTTGAATCGGGTAATGAAGGTAACTCTAGCAAAGATCGGCAGTATAAGTGTCCTAAATGTCCTTGGAAATTCATTGTCTTAAAACGATATAAAACGCATCTGATTTTTCATGATCTCGTTGGTCAAGTGCGAACGCATATTCTTACACATCTGGAAAAGGTGTTTTGTGGAAAATGTCAACGTGGCTTCAAAACGGACGCCACCGTACAAAAGCATATGAAAAAGTGCAAAGGACCAACTGATCCaaataagaagaaaaaagtacCAAAGCGTACTTCTGTGAGTTGTGttatttgtaatgaaattttcgTGAACGTCACAACGCTGGAAAATCACTTAAAAGATGTGCATCGTGACGAGGGTGTTGACATTCAGCAGGCAATTGCAAGtatcaaacaattaaaatgtcgaCTATGTGATAAACGATTTATTGATAACAAAACCCTGCTTGTGCATACTCATGCTTCCCACGGTCCGAAGAACATGGAATGTAAACTTTGTGGCAAAATGTTCAGAAATTCCACAAGTCTTATTTGTCACATTTCATCCAGGCATAAGGATGTTGCTCCAGCTACATTGGCCATAATGACAACACCAACTAATGAATTTCAGTATCCTGTACTGAGTAGTAGTGCCTTATCGAAAGGATATATAGACATGAAGCCAACTCAGAGGTGCATAGTAAGGGGCTGCCTAAATAACATAAGCATCAAAATATCGCTCTTTAGATTCCCAAAAGACCCAACCATCTTACGAATATGGTTAAAACGTATTGGACGCATGGATTTACTCAACAAAACACCAGAATACATGTGGACAAATTGTCGTGTTTGTGGTGCCCACTTCGAATCAAACTGTTTCACCACCTACAAACACAACCGCCTGAAAAATGATGCAGTTCCAAGCATTTTCCCCCGGACACAATTGAATAAGGATCAAACGGTAACAATTTACCGAGAAGAAGAAGGTGACGATGAAAGTAGCtcagatgatgatgatattcCATTGGGCAGACTTGAAATACCACGAAAAGATGATTTATCTACAGTTTGCCGGGGTTGCATGAGTACATCGAAGAAGCATCTTACAGTTTTACTGGACGATACCACAATGGAATTGTTTAGACAGTGTACTCGTTTGGATGCAGATTGTGGCGATGGATTGCCCAATGCCATTTGTGATCCATGTTTAAATTCCTGTCGAATTTGGTCGGAGTTTCAAGCCCAATGCAAATACAGTGACAGTGAATTGAGGCTGCAGTATGGCTTCACAATTCCAGAGATGTCAATGAAACATAATCAAAATGCTTGTGAATCCATGAATGGAATGCCCATCATAAAGGTTGAAGTTGACGCCGAACCACCAATGCATATGGACAGCTTTGTGTGCAATACTTGTGATGAGACGCTTTATGGGGATCAGTATTTGACCCATGTTTGTGGTGGTGATAAGAGTAATGAGGAAGAATTTCCAAAATATCCGTTTGAGCTGCATGAGGGCATGAGTAATAAGTATGATACAAAATTAAACGACGATAGGGAGGATGACAACAAATCTTTGATCGAGTTGTCTGATGATTCCAATGAGTTTAatgatgataatgatgatgatgatgatgatggaaCGATTGATAGAGATTTTGATTCAAATGATGATAGTAAAGACAATGACAAAGCTGCTGTAGATAGTGAAGATGAGAGCAGCATTCTTGACAGTGAAGATGAAGAAGAATATGAAGAATATGCTGGTTCAAGTAATCGAAAACATCCCGGCGAAACTATTGCCAACTACTTATGCACACAATGCGACAAAAGAAGCCTCACATACAGTTTGCTAAAGACACATATAAATAGTCACGACAGAGTTGGTATCATGTGCACAAAATGTGGTGTAATGGTGAGTACCCGAGCGGCGCTACTTTCTCATAATTCTCGAAAGCATTCGGGACGTGAGCAAACATTCAAGTGTCcggaatgttttaaattatttgacacCGAAGCGTCCATACGCAGTCACAGGAGAAGCGTACACACAGACCGTGCATTTGCTTGcaatatttgcacaaaaagttTCAAAACGCCATTTACATTGCGCACTCATCTTTTAACGCATTTGGATAAAAAACATTGCGAAAAGTGTGATCGTGGCTTCAAAATGGAAGAGTCCCTCGTCAAACATATGGCAAAGTGTACAGGACCCTCTAAGAAAAAGCAAATCAGATTCAGACCGCGCATTTGTTGTGGCATTTGCAAAACCTTCTTTGACGGTTCACGTGAATTGGAGGCGCACTTTATTGAAGCGCATGTTAACGAAGTGGCTGATGTTCGGGaggaaattaataaacataagaCAAAAGGTTGTTTAGAATGTGGAAAGCGATTCTTTTACTATTCTGACCTTAAAAATCATGCAGCGCTGTCTCATGGAAAGTTGGATATTAAATGCGAGCATTGTGATAAAAAATTCCGCAGTACGACTAGTCTTATTTCGCATACAGCACGAACACACCCAGAAAAAATGCCGGCTCCTCAAGCTTTGCTGGATAGATGTAAACAATTGGAGTCATGGAATCAATAG
Protein Sequence: MKTAQRCIVKGCPNNMSVNVSLFRFPKEATLLRIWLKRIGRMELLKKSANYLWCNCRVCGAHFDDDSFTTYKHNRIKADAVPSLLLTPETNEDHAVTIYGEHTDEDDMDTDEDIPLSKLEIPDMDVEESIPLSRLEIPVRTDDLSTICRGCMKTSKKNLITLEDITMELFQQCTRLNASLNDGFPKAICDKCLTSCRLWSEFQAQCMHSEREFKSQYGYKDYEERIESTIGVHEAMRKMQSVKVEVEVEPRLLMESFVCNTCDETLYGDEYLSHVCGATEDRKPQKMPGNPFDLSEGISPREDSKLDVKNDAIKFKIDSSDDSNDCNGDDGKMDDSRDYDSIDDSKGKSDKSYDSENPSSNIDSEEEEECVESGNEGNSSKDRQYKCPKCPWKFIVLKRYKTHLIFHDLVGQVRTHILTHLEKVFCGKCQRGFKTDATVQKHMKKCKGPTDPNKKKKVPKRTSVSCVICNEIFVNVTTLENHLKDVHRDEGVDIQQAIASIKQLKCRLCDKRFIDNKTLLVHTHASHGPKNMECKLCGKMFRNSTSLICHISSRHKDVAPATLAIMTTPTNEFQYPVLSSSALSKGYIDMKPTQRCIVRGCLNNISIKISLFRFPKDPTILRIWLKRIGRMDLLNKTPEYMWTNCRVCGAHFESNCFTTYKHNRLKNDAVPSIFPRTQLNKDQTVTIYREEEGDDESSSDDDDIPLGRLEIPRKDDLSTVCRGCMSTSKKHLTVLLDDTTMELFRQCTRLDADCGDGLPNAICDPCLNSCRIWSEFQAQCKYSDSELRLQYGFTIPEMSMKHNQNACESMNGMPIIKVEVDAEPPMHMDSFVCNTCDETLYGDQYLTHVCGGDKSNEEEFPKYPFELHEGMSNKYDTKLNDDREDDNKSLIELSDDSNEFNDDNDDDDDDGTIDRDFDSNDDSKDNDKAAVDSEDESSILDSEDEEEYEEYAGSSNRKHPGETIANYLCTQCDKRSLTYSLLKTHINSHDRVGIMCTKCGVMVSTRAALLSHNSRKHSGREQTFKCPECFKLFDTEASIRSHRRSVHTDRAFACNICTKSFKTPFTLRTHLLTHLDKKHCEKCDRGFKMEESLVKHMAKCTGPSKKKQIRFRPRICCGICKTFFDGSRELEAHFIEAHVNEVADVREEINKHKTKGCLECGKRFFYYSDLKNHAALSHGKLDIKCEHCDKKFRSTTSLISHTARTHPEKMPAPQALLDRCKQLESWNQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01382121;
90% Identity: iTF_01382121;
80% Identity: iTF_01382121;