Basic Information

Insect: Sylvicola cinctus
Gene Symbol: -
Assembly: GCA_963854165.1
Location: OY974082.1:17303010-17305591[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.014 0.69 10.3 2.1 1 23 244 266 244 266 0.97

2 7 0.0021 0.11 12.8 1.2 1 23 532 554 532 554 0.96

3 7 0.0001 0.0053 16.9 0.3 1 23 560 582 560 582 0.97

4 7 6.6e-05 0.0033 17.5 1.3 1 23 588 611 588 611 0.96

5 7 2e-06 0.0001 22.3 3.4 1 23 617 639 617 639 0.98

6 7 2.7e-05 0.0013 18.8 1.7 1 23 645 667 645 667 0.98

7 7 3.9e-05 0.002 18.3 4.8 1 23 673 695 673 695 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.014	0.69	10.3	2.1	1	23	244	266	244	266	0.97
2	7	0.0021	0.11	12.8	1.2	1	23	532	554	532	554	0.96
3	7	0.0001	0.0053	16.9	0.3	1	23	560	582	560	582	0.97
4	7	6.6e-05	0.0033	17.5	1.3	1	23	588	611	588	611	0.96
5	7	2e-06	0.0001	22.3	3.4	1	23	617	639	617	639	0.98
6	7	2.7e-05	0.0013	18.8	1.7	1	23	645	667	645	667	0.98
7	7	3.9e-05	0.002	18.3	4.8	1	23	673	695	673	695	0.97

Sequence Information

Coding Sequence: ATGGAGGATATATCAAATCGTGGAATGCACATTGCATCTGTATCTTTGATGCATCCACAACAACAGTATCATTTGAACGAAAATGTACTACGGGGCATAGAAAATGGAACCATTCAATTGGTTGCGGTTGACTCGCCCTCTTCCATCCAGAAGGACCAAGAATACATAGATCATACCCTTCTTAGTTCACAATATGTggaaaacaatcaaattgtaattgaagcAGAATCCACGAATTTTCCGACTTCACATACTCATTCTGTCTTAAGCGATGGCAATGAGAATGAAGATCAAATAGAAACAATTCGTCAATACCTCCATAAAAGTCAATTAGGCGTCAAGACTCGTGTGATTGTGTCCAACAATAAACAATCATTGTCGTCATCATCTTCTGTTGAAATGCACGAAGTCAGTTTAGATATGCAATCATTCTCCAAAACACAACCACCCCAATTGACGCCAATACGAAAATTACGCTCTACTCGTACTGATGAGATGAGGCGGGCGAGTCCCAAATCTGAAGAAGATGACTGCCTCGAAATACTGGACGCAAATTTTAGTGGCGGTGAGACAAAAGCTAAGCGAAATCTTCCGCACAAGAAACGCATTaccaagaaattaaaaaagagagACGCCATGGAACAACAACAAGATGAGTTAATCCGAAATTCACCAcctttaattcaaattgctAGTCCGTATCAACAGCAGTCTCCACAGCAACTGCAATTTGCCTGTCAATTGTGTGGAATATTCAGTGAAAATCAGCATGACTTTTTTACCCACTTGAAGTCCCATTATGAGCCACCACAAACTGTGATTGAGGCGCCTGATGTTAGTGAATCCTCAAAACTTGAGCCATTGTCAATATCGGAGTTGCATCTCTCCGATTGTGATGACGATGATATTGTCGAGGATCTTCCGGTTATCGAGGAGGAAGATGAACCCGATGAGGAAATTGAGGACAACACAATAATAAGGCATATAGCAGATAACACTGAGTTTAGTGACACGGAAGATATGCTGGAAGGTATTCGTGGGGTGGTGGATAAAGTGCAACAATCTGTGGAAAATGATTTGAATGAGGAGAGTAAGCAAAACTGGTATGAGGATGAGCTGCAAAATGAGATTTTAATACTCAAATCAACAGATGATAATTTTGAGAAGGAAGTCAAAgaagaaattgaattattgcaaatgtACAACGAAATGAATCAGGCGACAACTGAGGAGCCACACACTGCTGAAACAATTGAGTCTGAATTGAAGGAAGAAGTTGAAGTTTTAGATGGCGAATTGACATCGTTGAACGAACTGACCCACACTTCTGACCATGAGTTTGTTTTGCCAAAATCAAAAGGCTCCACTAAAGTAAAAACGCCAAAGtccaaaaaacataaaagcacTTCCGAAAAATCGACAGCTGACTTAAAAATCAACATCCTCAAATCTGGCCGCCGTTCTAAGCCATCCAGTCAAGCTGAAACCCAATTCATAAAAGACAATGTCGTAGTCTTTGAAGAAATCATCGAAGAAGACAACAAAGATTACGACCACAGCAAATCGAAGCGAAAGGTGCAAACTAAGACGCGTTACATTTGCATGGTGTGCGACAAAGTGTGCAATTCCAGGAACGCCCTGCAATATCACAGTCGTGCCCACACGGGCGAGCGTCCACACATGTGCGAAGTGTGTGGAAAAGGCTTCTTAAGTCGAAGTGCCCTCAATGTGCATGTGCGTGTGCACTCGGGTGACAAACCATTTGAGTGTCACTTTTGTTTGCGTCCGTTCCGTCAATGGGGTGACCTCCAGTATCACATGACATCCATTCATAGTGACGAGAAAAATCACCAATGCGAATTCTGTGGTAAAAAATTCTCGAGACGATACTCGCTTGTAGTGCATCGACGGATACACACGGGCGAGCGCAACTATGAATGCGAGTTTTGCACAAAGACTTTCAGAGCCAGCTCCTATTTGCAAGAGCATCGAAAAATACACACGGGCGAGAAACCACATCACTGTGACAAATGTGATCGAAAGTTTCGTGTGCGTGGTGACTTGAAGCGGCACATAAAGATTCATACACGAGAGAAAGCTCCACTGCGAAAGGTGGCGGCTACGCCTAAAGCACCCGCGCCACGACCTACACGAAAGACGCGTTCTGCTGCACTTAAGAAGGAGAACTCGGTTTGTCTGACAAATGTTGATGACCAATTTGGGTATGCAGATGATATTGAGATTAAGGAAAATGATGACGAGCCTGTTGAAATTATTAAGGATGATGTCATCTACACGGTCCAGTATGGTGAGGAGATTATTCCGGATGTTATTCATAAGAGCGATTCTTCTGCAAATGACGTTCAGGTGGTGATGATGGCCAAACCGGTTAGTTTAAGACGAAATACTTCTAAAGGTGCTGACGCTGACGCTTCCAATATCTTGGATATGAGCAAACTTTTGGAATCGCCGAGGGGGGAAAATGGAGGCAATGTTTTTGTCCTTTCGTATCCCGAATAG
Protein Sequence: MEDISNRGMHIASVSLMHPQQQYHLNENVLRGIENGTIQLVAVDSPSSIQKDQEYIDHTLLSSQYVENNQIVIEAESTNFPTSHTHSVLSDGNENEDQIETIRQYLHKSQLGVKTRVIVSNNKQSLSSSSSVEMHEVSLDMQSFSKTQPPQLTPIRKLRSTRTDEMRRASPKSEEDDCLEILDANFSGGETKAKRNLPHKKRITKKLKKRDAMEQQQDELIRNSPPLIQIASPYQQQSPQQLQFACQLCGIFSENQHDFFTHLKSHYEPPQTVIEAPDVSESSKLEPLSISELHLSDCDDDDIVEDLPVIEEEDEPDEEIEDNTIIRHIADNTEFSDTEDMLEGIRGVVDKVQQSVENDLNEESKQNWYEDELQNEILILKSTDDNFEKEVKEEIELLQMYNEMNQATTEEPHTAETIESELKEEVEVLDGELTSLNELTHTSDHEFVLPKSKGSTKVKTPKSKKHKSTSEKSTADLKINILKSGRRSKPSSQAETQFIKDNVVVFEEIIEEDNKDYDHSKSKRKVQTKTRYICMVCDKVCNSRNALQYHSRAHTGERPHMCEVCGKGFLSRSALNVHVRVHSGDKPFECHFCLRPFRQWGDLQYHMTSIHSDEKNHQCEFCGKKFSRRYSLVVHRRIHTGERNYECEFCTKTFRASSYLQEHRKIHTGEKPHHCDKCDRKFRVRGDLKRHIKIHTREKAPLRKVAATPKAPAPRPTRKTRSAALKKENSVCLTNVDDQFGYADDIEIKENDDEPVEIIKDDVIYTVQYGEEIIPDVIHKSDSSANDVQVVMMAKPVSLRRNTSKGADADASNILDMSKLLESPRGENGGNVFVLSYPE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -