Scin007435.1
Basic Information
- Insect
- Sylvicola cinctus
- Gene Symbol
- -
- Assembly
- GCA_963854165.1
- Location
- OY974083.1:30299662-30303105[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.087 4.4 7.7 4.1 2 23 90 112 89 113 0.94 2 11 0.00091 0.046 14.0 2.9 1 23 114 136 114 136 0.98 3 11 0.00058 0.029 14.6 0.4 2 23 144 165 143 165 0.97 4 11 0.5 25 5.3 6.7 1 23 171 193 171 193 0.94 5 11 0.0027 0.14 12.5 3.1 3 23 201 222 199 222 0.93 6 11 0.0052 0.26 11.6 0.1 2 23 229 251 228 251 0.94 7 11 2e-07 1e-05 25.5 2.0 1 23 256 278 256 278 0.99 8 11 0.0051 0.26 11.6 0.5 2 23 286 307 285 307 0.97 9 11 0.001 0.053 13.8 1.0 2 23 315 336 314 336 0.95 10 11 0.00043 0.022 15.0 0.6 1 23 342 365 342 365 0.94 11 11 0.047 2.4 8.6 6.6 2 23 372 394 371 404 0.95
Sequence Information
- Coding Sequence
- ATGATTTATAAGTCTCCTGTAGATAAAAGCGAAGATTTTGATACAGTATATTTGGAAGAAGAACACTTAGAAGAAGATAATAAAGATTTTGATCACATTGAACATCTAGACGATGATGAAGATTCTAACAGTTCAAGAGATAATTTTCAGACAGTTGTTGTTACCTCCTATTCTGATGATTCAAATCACCACGAATCTGATGCCAACATGAAAGCTGTTTCGCGTGAATCTCAACCTGACTCAAAAACCCAAAATGTTGTTCAAAAAACTTGCAGTCGCTGTGACTTTACATTCACGTCCAATGCCCAACGCGTGCAGCACTTTAGAGAGAAACACCACTTCGTATGCCACATTTGTAACACCAAATTTCAGACGGAAAAAGTTTTCCAAGCACACAAACGTGTTCATGAAAACAGGACGAATCCATGGAAGTGTGACATGTGTTCCAAAGAGTTGAGCACCCCACACACATATGTCGCTCATATGGAAATACACAAGGGAACGCTGCGTCATCATTGTGACCAATGTAAGTACAGCTGCGCTCGACGAAGCGACTTTGATATACACAAAGTTAGTCATTCCTTAGAGAGAAAGCATCTGTGTGATTTGTGTGGCAAAAGCTATAGCACTCGATCAGGTTTGGCGTGCCATCGACGGTATGGACATACTGCCGCTAAGATGGTTTCCTGTGCGTATTGTGAGACTAATTTTCAGAATCCGAATTCTATGAGGGCTCATGTACGAGCCGTGCACAAAAAGGAGCAGTACGAATGTGAAATTTGTAGTAAAATATTCAATCGGAAGGATCATTTAaggGCACACAAACGCGTTCATGAGGGACGTGAAAATCCATGGAAATGTGAAGTGTGCTCGAAGGATCTGACCAAATTGAGCACTTATTTGGAGCACATGCAACAACACACCGGCCAAAAAGCAGCTAACAAGTGTGACAAGTGTGACTACACCAGTTCACGTCGTTCCGATGTCGAGAAACACAAAGTTATCCATAcggatttgaaaaattatctgTGTGATTTATGTGGTAAAAGCTATGGTTTTAAGTCGGGCTTCTTGAATCATCTAAAGTACGGCCACACTAATGAGAACACAATGAAATGTAAAGCGTGTCCTATGACATTCAAAAATCCTGTTTGCCTTAGAAAGCACACATTGGCGGTCCATCTGAATTCTCAtctagaaaagcatgaaaaggAAGAGAATATTCAAGAAGAGACCATTGACGACGAAGACCTTCTTTATATTGCAGAGGAATCTGTATGA
- Protein Sequence
- MIYKSPVDKSEDFDTVYLEEEHLEEDNKDFDHIEHLDDDEDSNSSRDNFQTVVVTSYSDDSNHHESDANMKAVSRESQPDSKTQNVVQKTCSRCDFTFTSNAQRVQHFREKHHFVCHICNTKFQTEKVFQAHKRVHENRTNPWKCDMCSKELSTPHTYVAHMEIHKGTLRHHCDQCKYSCARRSDFDIHKVSHSLERKHLCDLCGKSYSTRSGLACHRRYGHTAAKMVSCAYCETNFQNPNSMRAHVRAVHKKEQYECEICSKIFNRKDHLRAHKRVHEGRENPWKCEVCSKDLTKLSTYLEHMQQHTGQKAANKCDKCDYTSSRRSDVEKHKVIHTDLKNYLCDLCGKSYGFKSGFLNHLKYGHTNENTMKCKACPMTFKNPVCLRKHTLAVHLNSHLEKHEKEENIQEETIDDEDLLYIAEESV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -