Scin005003.1
Basic Information
- Insect
- Sylvicola cinctus
- Gene Symbol
- Adck5
- Assembly
- GCA_963854165.1
- Location
- OY974082.1:64266897-64272170[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0068 0.34 11.2 0.2 2 23 808 829 807 829 0.95 2 12 2.2 1.1e+02 3.3 0.7 3 19 837 853 836 858 0.88 3 12 0.066 3.4 8.1 7.2 1 23 866 888 866 888 0.96 4 12 4.1 2.1e+02 2.5 0.1 1 7 901 907 901 922 0.69 5 12 5.5e-06 0.00028 20.9 0.6 1 23 928 950 928 950 0.96 6 12 0.00076 0.038 14.2 2.2 1 23 955 977 955 977 0.96 7 12 0.00085 0.043 14.1 3.2 2 23 983 1005 983 1005 0.97 8 12 0.013 0.67 10.3 0.7 1 23 1010 1032 1010 1032 0.96 9 12 0.0019 0.094 13.0 3.9 1 20 1037 1056 1037 1058 0.94 10 12 0.52 27 5.3 0.0 2 23 1077 1099 1076 1099 0.88 11 12 3.2e-07 1.6e-05 24.8 0.6 1 23 1116 1138 1116 1138 0.98 12 12 2.1e-05 0.0011 19.1 1.4 1 23 1144 1166 1144 1166 0.97
Sequence Information
- Coding Sequence
- ATGCTGCGACCTTTGATCCGATCATGTCACTCAATAAGATTAAATGCATTACCAACAAGAAAATACGGTAGCAAAGTAATACCAACTCGTACCACCTCCTTTAAGCGGAAAGCGCTCCTTACCGCAATTGCAGCTTCAGGCATTGGTTTAGCGTACGATGGAATTTTACAGGATTTTCAGTCATGGGGAGGAATTGAACGGTTTATGCGATCGTTGAAGATTGCGGTTGTCATCTCGGCGGATTATGCGTGGACACTTTATGGTGTTGAGGAGGGCTCGGACAAATATGATGAAATAATGAAATCCATCAACTTAAGGTCAGCAGAAAAACTCTTGAAAGGATGCCTTCAAAACGGTGGTCTGTACATCAAAATTGGACAGGGCGTTTCCGCAATCAATCACATTCTTCCTAAAGAATACACAGACACCCTGAAAAAGCTTGAAAATGAATGTCTTCCACGATCCACGAATGAAGTGAAAAGACTTTTCCTTCACGACTTTGGTAAGACCCCCGAAGAAATGTTCAAAACGTTTGACTACGAACCAATTGCGGCCGCCAGTTTGGCGCAAGTGTTCAAGGCTACCACTCACAACGGTGAACACGTTGCTGTCAAGGTACAATACAATGATTTGCAGAAACGCTTTGCTGGTGACTTCGCTACAATTCTATTTCTGCAACGTCTTGTCAAATTCGTTCACAAAAACTACAACTTCAGTTGGATTTTAGAGGATCTTCGGGGTTCGCTGGAAATGGAGATGGATTTCAAGAATGAAGGAGAAAATGCTGAAAAGTGTGCTAAGCATTTggcgaaatttaattttgtccaTGTTCCCAAAGTGTTTTGGGACCTCACAAATGAGAGGGTTGTTACAGCTGAATGGATTGATGGTTGCAAAATCTCCGACTTAAAAGAAATCGAAAAACAGGGGATGCACCTTGCAGATCTTGACAAGAAGCTATTTGACACATTCTCCGAGCAAATATTCAGTACGGGATTCGTGCACGCTGATCCACATCCTGGCAATATTTTTGTGCGTCGCAATCCTCAAAGCGGAAAACCCCAGCTCGTTCTTTTGGATCATGGACTGTACCAGCAGATACCGGAAGAAGTCAGAGTACCGTTGTGTAGCTTTTGGGAGGCGATCGTTCTGAAGGATGAGAAATTGATGCAAAAGTATGCTAGCCAGTTGGATATTTCGGATGCGGATAAATTTGCAGAAATTCTGTTGCAACGCCCTGTAAATTTGAAAAGCAGTGGCGCTGCATTGAGTCAAAAGGAGATTGCTTATTTTCAGGAACTGGCTAAAAAACGTTTTGATATCATTTTGGACACACTTAAGGAAATGCCAAGGAACTTATTGTTTGTTGTCAgaaaCCTCAACACAATACGAGCGATTGCAAGAGATCACGGTGATCCGATTGATCGCCCAAGACACATGGCAAGGTATGCTCAAATATGCATGTTGCGCAATCACCGAGGTCTTACGGGATATGTCAGATGGGTGTGTAggagattttattttgaagtggctttatgGTCCACTGTTTTACAATTCTGGATACTAAGAAGGTTCCTGAATGTGTtaggatttttaaaaagtgaacCAGAACTAAGTAGTATTCTGGATTCAAGCAAACTCAAGAGGACTGCAGTTCCTGATGAAAATCTTCCACTTAAATTAGAAGATGTCAACCAAAATGACTTCATTAGAATGTCACAGGATGTTGTGGATTCGGAGTATCAACATTTAACTGCAGCATTGaTTGCAGCGGAATGGTCAAATACATGTCGGGCGTGTTTAACACCATTAACTGAGGAGTCGGAGTCTCTTTTGGACGCTGTCAACAGCTTACTCTTCCAGCAGTGCACAGCGTTAACCCATCAGGACTACTTGCCACAATCCCTTTGTGCTGGATGTCAATCAAAATGCTGGgattggtttaaatttaaaatgcaatgcgAACAAAGTCAATGCTTATTAGATTCAGTATTGAAGTGTCGTTTAAAAGATGCACTATCAAAGGATTcaatgaaaaaggaaaaataccCACAACCAATTATTGTTGATTGCAATGAAGacaatttcaataatgatgatgattttaaaattagtgacGATTTAAGTCTTAACTGTAATGGatgcaatacaaaaatacCTTATGCCTTATTTTTTGAACATCAGTGCCAGTTAGAAACTATAAGCTCCCAGGACGAAGATAAATCCAGTCAACTAATAGTACAGCCTTCATTTTGTGATGATGTTCATAATGATATGAGTTGTTCGACACATCAGACAGATTCTGATGACAATTTCTCTGATAATGCCTTAGTGCCTTTGGGGATgagaaaaaaatggaaatttaagATTGAAAAGGATGTCTCCCAATTGGATGAAATCGTTGAAGTTAACAATTCATTAGTTTGTCCTAATTGTGACTTAAAGTTCAAACAATTAGCTAAATTAAAACCTCATCTGGTGACACATGCTTTAGTTAAGgaacccaaatgcattaaatgtgACAAAATATTTGCGAACACAATGCTTTTGGAAGAGCATTGCGTTTCTGAGcacaataatGAAGTGGTTCGAAATTTTTGCTGCCAGTATTGTGACAGCAGCTTCTCACGTTACAAGTTCCTTCTCAAGCACACATACAAACACGAAGGTGTCCTGGCGGCATTGTCCCATGGGACCAAGTATAAGTGTCCAAAATGCGATGACATTAAAATTAGTGAGACAGCATTGAAAAATCACGTGAAGGAGTGCATCCCATACAGCTACATTTGTCCGCAATGCAACAAAGCCTTTAAGAGTCCCACCCTACTGCGCCGCCACAAATCCGAACACAATCCCAACGAGTATCTTTGCAACACATGCGGTAAAGTCTACAAATGTAAATCGTCATTGAAGGCGCACGCCCTCACCCACATGGAGCGAACTGCCAAATGTGAGATGTGTCACCGCAACTTTTTTGGGACCgccaatttgaataaacacaTGAAGCGAGTGCATTCAGCGGAGAAGCACGCTTGTGAGTTTtgtttaatggaatttaaaagctCGAAGGCAATCCGTGCTCACATGGCCACACACATGGCGCGCCAATTCAAATGCGATTTCTGCGAgagaacatttaaatttcacagcTCCCTTGAGAAGcacaaagaaaaatgttttcccgGCAAAAAGGTGGCCACCAAAAAGAAGTCACCCGGCGAGGTGGTGTACTGCCCCATTTGTGGAATGGATTTTGCTGCTGTGCCAGCTGTACGTCAGCATTTGCAGGAAGTTCATCGCAATGATGGAATTGATATTGATCGTGCCTTTGAGAGCATTAAAGTCTTCAGTTGCAGTGAGTGTGGCAAAACGTTTGCCACAATGAGGAACTTAAAGGACCACATGGCAACACATTCAGCGAATAAGCCACATGAATGTGACGTTTGTAAAAAACGTTTCAGAGATACCAGCCAATTGGCTGTGCATTTAATAAAGCACAAAAATGAGCTTATTACTCACCAAGGAGGTCTTAATATTACCAGTATTGCAATTTTACAACAGCCAAgctaa
- Protein Sequence
- MLRPLIRSCHSIRLNALPTRKYGSKVIPTRTTSFKRKALLTAIAASGIGLAYDGILQDFQSWGGIERFMRSLKIAVVISADYAWTLYGVEEGSDKYDEIMKSINLRSAEKLLKGCLQNGGLYIKIGQGVSAINHILPKEYTDTLKKLENECLPRSTNEVKRLFLHDFGKTPEEMFKTFDYEPIAAASLAQVFKATTHNGEHVAVKVQYNDLQKRFAGDFATILFLQRLVKFVHKNYNFSWILEDLRGSLEMEMDFKNEGENAEKCAKHLAKFNFVHVPKVFWDLTNERVVTAEWIDGCKISDLKEIEKQGMHLADLDKKLFDTFSEQIFSTGFVHADPHPGNIFVRRNPQSGKPQLVLLDHGLYQQIPEEVRVPLCSFWEAIVLKDEKLMQKYASQLDISDADKFAEILLQRPVNLKSSGAALSQKEIAYFQELAKKRFDIILDTLKEMPRNLLFVVRNLNTIRAIARDHGDPIDRPRHMARYAQICMLRNHRGLTGYVRWVCRRFYFEVALWSTVLQFWILRRFLNVLGFLKSEPELSSILDSSKLKRTAVPDENLPLKLEDVNQNDFIRMSQDVVDSEYQHLTAALIAAEWSNTCRACLTPLTEESESLLDAVNSLLFQQCTALTHQDYLPQSLCAGCQSKCWDWFKFKMQCEQSQCLLDSVLKCRLKDALSKDSMKKEKYPQPIIVDCNEDNFNNDDDFKISDDLSLNCNGCNTKIPYALFFEHQCQLETISSQDEDKSSQLIVQPSFCDDVHNDMSCSTHQTDSDDNFSDNALVPLGMRKKWKFKIEKDVSQLDEIVEVNNSLVCPNCDLKFKQLAKLKPHLVTHALVKEPKCIKCDKIFANTMLLEEHCVSEHNNEVVRNFCCQYCDSSFSRYKFLLKHTYKHEGVLAALSHGTKYKCPKCDDIKISETALKNHVKECIPYSYICPQCNKAFKSPTLLRRHKSEHNPNEYLCNTCGKVYKCKSSLKAHALTHMERTAKCEMCHRNFFGTANLNKHMKRVHSAEKHACEFCLMEFKSSKAIRAHMATHMARQFKCDFCERTFKFHSSLEKHKEKCFPGKKVATKKKSPGEVVYCPICGMDFAAVPAVRQHLQEVHRNDGIDIDRAFESIKVFSCSECGKTFATMRNLKDHMATHSANKPHECDVCKKRFRDTSQLAVHLIKHKNELITHQGGLNITSIAILQQPS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -