Basic Information

Insect: Sylvicola cinctus
Gene Symbol: -
Assembly: GCA_963854165.1
Location: OY974084.1:13407200-13412548[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.71 36 4.9 0.0 2 23 7 28 6 28 0.96

2 14 0.15 7.7 7.0 0.5 1 23 1037 1060 1037 1060 0.96

3 14 2.7 1.4e+02 3.0 2.2 1 23 1168 1190 1168 1190 0.95

4 14 2.3e-05 0.0012 19.0 1.6 2 23 1193 1214 1193 1214 0.97

5 14 0.0003 0.015 15.5 2.6 1 23 1220 1242 1220 1242 0.98

6 14 0.00012 0.0059 16.8 1.7 2 23 1249 1271 1248 1271 0.96

7 14 1.4 71 3.9 0.8 5 23 1286 1304 1285 1304 0.95

8 14 0.073 3.7 8.0 5.3 3 23 1311 1332 1309 1332 0.91

9 14 5.4 2.7e+02 2.1 0.4 2 23 1346 1366 1345 1366 0.85

10 14 4.5e-05 0.0023 18.1 1.8 1 19 1372 1390 1372 1394 0.94

11 14 5.8e-06 0.0003 20.9 0.9 1 23 1402 1424 1402 1424 0.99

12 14 0.0002 0.01 16.0 3.1 1 23 1430 1452 1430 1452 0.98

13 14 7.2e-06 0.00037 20.6 3.9 1 23 1458 1480 1458 1480 0.99

14 14 0.028 1.4 9.3 7.4 1 23 1486 1508 1486 1509 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.71	36	4.9	0.0	2	23	7	28	6	28	0.96
2	14	0.15	7.7	7.0	0.5	1	23	1037	1060	1037	1060	0.96
3	14	2.7	1.4e+02	3.0	2.2	1	23	1168	1190	1168	1190	0.95
4	14	2.3e-05	0.0012	19.0	1.6	2	23	1193	1214	1193	1214	0.97
5	14	0.0003	0.015	15.5	2.6	1	23	1220	1242	1220	1242	0.98
6	14	0.00012	0.0059	16.8	1.7	2	23	1249	1271	1248	1271	0.96
7	14	1.4	71	3.9	0.8	5	23	1286	1304	1285	1304	0.95
8	14	0.073	3.7	8.0	5.3	3	23	1311	1332	1309	1332	0.91
9	14	5.4	2.7e+02	2.1	0.4	2	23	1346	1366	1345	1366	0.85
10	14	4.5e-05	0.0023	18.1	1.8	1	19	1372	1390	1372	1394	0.94
11	14	5.8e-06	0.0003	20.9	0.9	1	23	1402	1424	1402	1424	0.99
12	14	0.0002	0.01	16.0	3.1	1	23	1430	1452	1430	1452	0.98
13	14	7.2e-06	0.00037	20.6	3.9	1	23	1458	1480	1458	1480	0.99
14	14	0.028	1.4	9.3	7.4	1	23	1486	1508	1486	1509	0.95

Sequence Information

Coding Sequence: ATGATGCAGTCTATGGTCCAGTGTCCTGTGTGTGATCTGTTTCTAAATGTTGGTATGTCGCTGGCGACGCATTTAGAAACACATCCCAAGGAGTTTATGATAAAAGCCATCACTGAGATGTACAGCCACCAGTACAACCAAAAACAAGGTGgatcaatgtcaaaattcatTGTGAGCGCTCTTCCTGCTGCTTCTATATCGTCGCAACTACAACATCCCGCATTACAAGCGCCTCGACAATTGCAGTCTATTGCTGGTGCGTCTGCTGTTGACATGCCTAATACACGTGTGTATCGCTATAACAATCAGGCCACGGGCAACAATGCTATTGGTAGCGATACTGGCAATTATCAGCTTGCCAGACATCACATGTACACGCAACAATCCCAGAAATTGATTCTTAACCAAACCCATATTTTGCCACCAAGCTGCAGAAGATCGCGtattcaacaacaacaacatcgaCCACTTGAAGCAAGCATGATTAATGCAATACCCAGCCgtaatgcaattcaatttgttacCTCACCACACAATGCACGACAGAAGCTTTACATCCACTCACAGACCGCCACAACTCAATCACCAACAACACAATTTGTGGCCTTGCAATCGACAAGTGCGACAACTTCAGTGGCTGCTGCCACCACTACTACTATTAAGATGCCTGCATCCATATTGTCAGCATCAGCCACAACAACAGCGCAACGTGCATCATCAGTGCTTCCAGTGATTCATGATTTCctgccgccaccaccaccatatCCGATATCATGCACTGCCAGCATCGGTGTGCCTCCATTTTTGACTGAATCGACGAAAACTACCTCCACCACAACTAGCACAGCCACCAATAATATTGATGATGAAATTAAACCGTTCACTGATTACTGGACACTCAACGGCCCTGATAATGAGCGGGATGAATGCTCCACAGAGAACTACGATGAGTGTCATTATACGCCAGATGATGAATTTGTTGATGCAGAGACTCTGGAAAAAGTGAGATCACCTGGTGAAGTGTATCACGAAGAAGTTGATGATTTTGTGATAGAACAATCGAATGCCGCCATTAAATGTGAAGAGCAAATAATAACACATCAGAGTTTGTACGATCCTTGCGAGGATTCGAAGCGTGTTCAAATAATAAGCGATGTTAAGTTGCCGAATGCAAATGAGTCTTTCAGCGCTAACTCTGAATCCTATCATCGTGTGTGTTACGAAGCTGAGGTTATTCCAAGTGGAAGTCCATCTCAAATGTTTGATTATCAAACCAATTTAGATCAGTCCTTAAAGGCGGAGGaacttgattttaatttgaaacgaACACCAGTAATACAGATAGTAGGCTCAATAAAAATGGATCAACCGGTTATTGATTTAGATGAAATGATGCCTGAAATGATCGACGAAGCCAAACAAGAATCATTTCCAGAAGAGATACTTCATCAGGATGCACCTTTAAATATGCATGCACCACAAAAACTGGAAGTTGAAGAATATTTCAATCAACCAAACAGTAACGGTCAATTTAGTGTGATAAAAATGGTCTCATCCAAACATATGTGTGATCCGTCGACCAGCAACCACAGTGGACAATCAACGCATGCTGACGTACAACAACCAACCATAACAGTGCGGCGACAGTCAACACACGTTAGCCTTGATGTTGATCCACTAAGCGATGGTGATAAGgtcttgaaattaaatgaagaacCGAGCATCATTGTGAGTGAGCGAGATAGACGTCGTTCTCCTAGCAGCAGGCAACACAATTCAAGTGTCACTGCACATCACAAAAGTAACGGATTATTGATTGATCCTCAAAGCGTGCAGAACCAAACTGGTACAAGTGAAAAATTGTATGATAATAAAACCACAACGACGTTGGCTATAGTTGCTGGAACCCCGACGCGGAAACCCTACAATCGTCCACCCAAGAAGTTGGttgtcaaatttattaaaccatttttgCCCGGCGTTGAGAATGAAGAGGCAAATTTAGTGGCCCCTGAAATATCACCTCCACAAACGTGTGCTAATACATTAGTGTCGTCACCATCAACATCTCGTGGAAAAATGGCATCATCAtcgtttgaaattaaaaatgataaagaaGTGATTGTGCATCGAGTGTTAGTGGAGGATTCTGATGACGAGGATTCTAAGGAAATTTGCGACGTTGCTGTAGTTAGTGATATTAGTTCTGATGTTCACAGACAAGCAGTAGCCGACGAttccaaacaaacaataattgtcgaaaactttaataatttggttGCACAAACGAATGACGTAAAGGCCATCTGCGATGCTGTTCAACTGGCTGAGTTGTGCAATTCTCCATCATCCGCTGTTGATAATGCAAACCATGAAgctattttaaaacaagtaGATGCGGGTCCGTCACGTCATGCAGTTCAATCTGATGTTAAGGAGGAATTATCTAGTGCCGCTTATGTTGTGGATCGTTTTGAAGTGATTGAATATCCCGATTCACAAAATCTTGTGACAAAAATAGAAGCCAAGACAGTCTCTTCTGAACAGTCAAGCAATAAACTAATCACTTCTGACACAAGTAACAGCGCCAGTGGTCAGGAGTATGGTCATTCGTCGTACACACCGTACACCAACAACGAACACGACAACTTTTTCTATGGGGCATCGCATTTCTCACGTTCATTCGTGCCTCAGAAATGGCATCCTAATGCTTCGAATGAGCAACTTGATGGCGAAGGCAGTTCATATTTGGATTTGGATGCGTACAAGGGCAATCGTGTGGACCGCGCACCATCCACGGatagtttaaatattagaaCTGATGAGAAAATGCCAGCAAAAGGGGAAATTTCAGGACAGGAAAGCAATGGAGATGGCTCCTGGAGTCAGCATgATACTTTGCCAAGATACTCAAGTTCATACGATACAAATGTGGCTAGGGAAAGCTGGAGTTTAAGTACTTCTCATGCAACAACATTAGAACAGTCTGCTTCCATTCTTCCCCAATTTCCACACATCGACCCTGTGCAGTCTGACATCAAACCATTTGCCAATTTGGATGCATTCGCAAAAGCTCCAACTGTGACACCGAAAAAAGTTGTCAAACAATTCAGCTGCCCACAGTGTATCAAAACATTCGTAACAATGCGTGGCAAGAGAGCGCACATCCTTTCCAAACACGAGAATCGCTCAAATTCCACCCAAGTAAGTAACAGTGCAAATGCAAGCAGTTCATCAACCGCGCGGATATTGTCCGCAAATTCTTCTGGCATTCcgcaaacaaaaacattggACACCATGTCAACGCCATCGTCTTCATCGGGGATAACATCAGGCTCTGGGATTTTCACAATACGCAACATAACGCAAGTGCCCGTTCGAATgagcaaatatttgtttgaggTGAATTTGAATATGTTACGCAGCAGGAGAATCCCAAAGGTGGAGGATGGATGTCCGGTTCCGGTCGCAGAAgagtcaaaatttattaaaacggaAGGGTTTTCCTGTCTTTCTTGCTCCGAGTGTTTTTTGACTGTGCGAGCGTATAACAAACACATGGAACTTCATCCCGCTGAGTGCTACAAATGCACCAAAACATTCAAAAGTTGGAGTAGTCTTGCGCTACATTTAAAGCGCCATCTCAATATCAAGGAGTACTCATGTCATCAGTGTGAGAAAAAGTTTGTCTTGCGTCAGAATCTAATGGAACACATGTACATCCATACTGGTGAGACCCCCATCAAATGTCCATCATGTCCCAAAAAGTTTCGTCGTTACTCCAACATGGTGCAACATCGTCAGCGACAACATTTCcagaagaaaaacaaacagcCAGCCAAGGATTACATTTGTCAGTGTGGCGAGGTGTTCCACACCATCTCCAAGTACATGTGGCATAAAGAAATCCACGAGAAGAAACCAAAATGTTGTCGATATTGCCGGGAGCGCTTTGTGCACTTGAACAGCTTGCGTCGTCATGTCATGCTGTCGCATCCCAATGAGTATTTGCTGGGGTCAAAAATTGATCTGGTGCCGTGTCCCATCTGTGAGAAGCGAGTGCTTCAGACGCGTCTCAAATTTCATCTGCGCACCCACACATTGCGCAAGATGTTTGAGTGTGACATATGCAAGAAAAAATTTAGCACCAAGTGGAATTTGAAGCAACACAATTGGACGCACAAGAATCGCTCGTCGAAGCCGTTCAAGTGTACATTGTGCACGAAGGCGTTTGTGCGCGAGAGCAATTATCTCGCCCATCTGAATACGCACAATGCGAGGCGACCCTACACCTGCAACCACTGTGGTTATCAGTTTGTTCTCAAATACAATTGGTTGAGGCATACGCGGGAGCACGAGAATGCTAAGCAGTTTAAGTGTAACATGTGCGAGAAGGAGTTTCATCGCGCCTATTATTTGACCGAGCATATGCGAACGCACACTGGTGATCGACCACATGTGTGTACCATTTGCGGAAAACGATCAACCACCAAAACAAATCACAACAAACATTTGAAGATACATCATGCTAGGGATCCGGTGACAGTAGAGTCGTAG
Protein Sequence: MMQSMVQCPVCDLFLNVGMSLATHLETHPKEFMIKAITEMYSHQYNQKQGGSMSKFIVSALPAASISSQLQHPALQAPRQLQSIAGASAVDMPNTRVYRYNNQATGNNAIGSDTGNYQLARHHMYTQQSQKLILNQTHILPPSCRRSRIQQQQHRPLEASMINAIPSRNAIQFVTSPHNARQKLYIHSQTATTQSPTTQFVALQSTSATTSVAAATTTTIKMPASILSASATTTAQRASSVLPVIHDFLPPPPPYPISCTASIGVPPFLTESTKTTSTTTSTATNNIDDEIKPFTDYWTLNGPDNERDECSTENYDECHYTPDDEFVDAETLEKVRSPGEVYHEEVDDFVIEQSNAAIKCEEQIITHQSLYDPCEDSKRVQIISDVKLPNANESFSANSESYHRVCYEAEVIPSGSPSQMFDYQTNLDQSLKAEELDFNLKRTPVIQIVGSIKMDQPVIDLDEMMPEMIDEAKQESFPEEILHQDAPLNMHAPQKLEVEEYFNQPNSNGQFSVIKMVSSKHMCDPSTSNHSGQSTHADVQQPTITVRRQSTHVSLDVDPLSDGDKVLKLNEEPSIIVSERDRRRSPSSRQHNSSVTAHHKSNGLLIDPQSVQNQTGTSEKLYDNKTTTTLAIVAGTPTRKPYNRPPKKLVVKFIKPFLPGVENEEANLVAPEISPPQTCANTLVSSPSTSRGKMASSSFEIKNDKEVIVHRVLVEDSDDEDSKEICDVAVVSDISSDVHRQAVADDSKQTIIVENFNNLVAQTNDVKAICDAVQLAELCNSPSSAVDNANHEAILKQVDAGPSRHAVQSDVKEELSSAAYVVDRFEVIEYPDSQNLVTKIEAKTVSSEQSSNKLITSDTSNSASGQEYGHSSYTPYTNNEHDNFFYGASHFSRSFVPQKWHPNASNEQLDGEGSSYLDLDAYKGNRVDRAPSTDSLNIRTDEKMPAKGEISGQESNGDGSWSQHDTLPRYSSSYDTNVARESWSLSTSHATTLEQSASILPQFPHIDPVQSDIKPFANLDAFAKAPTVTPKKVVKQFSCPQCIKTFVTMRGKRAHILSKHENRSNSTQVSNSANASSSSTARILSANSSGIPQTKTLDTMSTPSSSSGITSGSGIFTIRNITQVPVRMSKYLFEVNLNMLRSRRIPKVEDGCPVPVAEESKFIKTEGFSCLSCSECFLTVRAYNKHMELHPAECYKCTKTFKSWSSLALHLKRHLNIKEYSCHQCEKKFVLRQNLMEHMYIHTGETPIKCPSCPKKFRRYSNMVQHRQRQHFQKKNKQPAKDYICQCGEVFHTISKYMWHKEIHEKKPKCCRYCRERFVHLNSLRRHVMLSHPNEYLLGSKIDLVPCPICEKRVLQTRLKFHLRTHTLRKMFECDICKKKFSTKWNLKQHNWTHKNRSSKPFKCTLCTKAFVRESNYLAHLNTHNARRPYTCNHCGYQFVLKYNWLRHTREHENAKQFKCNMCEKEFHRAYYLTEHMRTHTGDRPHVCTICGKRSTTKTNHNKHLKIHHARDPVTVES

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -