Basic Information

Insect: Sylvicola cinctus
Gene Symbol: -
Assembly: GCA_963854165.1
Location: OY974082.1:2276598-2278616[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.00084 0.042 14.1 1.3 1 23 44 66 44 66 0.99

2 10 0.027 1.3 9.4 0.3 1 21 72 92 72 93 0.92

3 10 0.00019 0.0098 16.1 0.4 3 23 350 370 347 370 0.96

4 10 1e-06 5.1e-05 23.3 0.6 1 23 376 398 376 398 0.98

5 10 0.00074 0.038 14.2 0.8 3 23 407 427 405 427 0.98

6 10 1.4e-05 0.00071 19.7 1.9 1 23 433 455 433 455 0.98

7 10 1.3e-05 0.00064 19.8 3.3 1 22 461 482 461 486 0.94

8 10 0.17 8.7 6.8 3.4 1 23 493 515 493 515 0.98

9 10 5.9 3e+02 2.0 2.9 1 23 527 550 527 550 0.93

10 10 2.2e-05 0.0011 19.0 0.1 1 23 568 591 568 591 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.00084	0.042	14.1	1.3	1	23	44	66	44	66	0.99
2	10	0.027	1.3	9.4	0.3	1	21	72	92	72	93	0.92
3	10	0.00019	0.0098	16.1	0.4	3	23	350	370	347	370	0.96
4	10	1e-06	5.1e-05	23.3	0.6	1	23	376	398	376	398	0.98
5	10	0.00074	0.038	14.2	0.8	3	23	407	427	405	427	0.98
6	10	1.4e-05	0.00071	19.7	1.9	1	23	433	455	433	455	0.98
7	10	1.3e-05	0.00064	19.8	3.3	1	22	461	482	461	486	0.94
8	10	0.17	8.7	6.8	3.4	1	23	493	515	493	515	0.98
9	10	5.9	3e+02	2.0	2.9	1	23	527	550	527	550	0.93
10	10	2.2e-05	0.0011	19.0	0.1	1	23	568	591	568	591	0.97

Sequence Information

Coding Sequence: ATGAGTGTTGCTGTCCAACCGGCACCCATTTTTGAGAGAAATACAGTAGGGGACGACTCGGACGATGCGTATCAGGAGCCTTTAATGGAATGTGCTTCCATTTTCATTGACACAATAGGATGTTTCTACTTTCGATGTAACATTTGCAATGAATCCGtagatcaatttaatttattcaagtcCCACTTACAAACCCATTTCCATGATCCCCCGTTTTTTTGTCACTTTTGCGATCAATCATTTGATGAGTTTGAGTGGTTAATTATTCATGTTAATGCACGTGAGTGTTTGTTGGCACACCAAGACGATATACGAGATAATAATGATGACAATCATCCTGGCGATCAGGGGGAGGATGACGATACAAGAAATTCAGATGGAAATTGTACGAGCATTGAAAGTAACCACTCATTGGTTGACGGTGGTGGAAGCGATACCGATTCAGTGAAATACAATAAGGATTCAGTGCAATTTTAtgacaatttatgtaaattggaGGAGATTCCACTTATTGATTGCGAAACAATTCATCTACAAAAACTGGAGTCGGATGTAAAAATAGAAGATGTTAATCAAAAAACACTTGCAAGTGAGTCGGAATGGGAAGAAATTGATCTCAACAGTGACTTGTGGTGTGAAATTGATGGTATGAAAAATTCGACtatcaacaataacaaaagtgttGATTCAGCAAGCGATACACATAATGGGAACACACctgtggaaataaataaatgcaataacacTGCAACTAATTTTGAGGAGTTTTTAACGTCTTTTCAGATAAACCTCAATAGAAATAATGTGGAAGAGGAATGCGAAACTAAACATGAAACGCTGACTTCATTGCAAGAAGACGAAGAAATTATTAATGGACACGAGTCAGATTTATGGGAGGAAGTGCCCATTTGCAAAAATGTCCTGCCAGATGACGGTAGCAAAAAGAAGATCCCCGATGACGATGTAACGGACCAACGCAGAGATATAAAAACGAAGAGGAAACGGGGCAGACCAAAACAATATTCTGCCAACAATAGATGCCCGCCATGTGAGGTGTGTGGAAAAACCTTTGCCTCATACGATTATGCCCAGCGCCACAAATTAATTCACACCGGTGAGAAACCGTTTGAATGTAACATTTGTGGCCGAAGATTTAGCCAGAAAAGCTCCGTTAAAGTGCACGTCCTGTCGCACAATCGCAATGTGAAAAACTACGGTTGCGACATTTGTGGCGGAAAATTTGcctcacaaaatgttttacacaaGCATATGCAACGCCACTCCGATATCAGACCGCACAAGTGTGAATTATGTGGCAAGGGTTTCGCATTAAAATCGTATCTCACCTACCATATGTCATCGCACATGGCTGAGAAGCCTCACAAATGTAACGTCTGTCAAAAGACCTTTGCCCGGAAAAACTACTTAAAGGAACACATGCAAAAAAAGAATGTACACATTTATCAGGAGAAGGAGTTTAAGTGCACAAAATGTATATCCTCCTTTGACACAGAGCTCGGCCTCAAGCATCACTTGAAGCGACATGACCTCATAGGCGTGCAACTTCCAACGGAAATTCACAAGTGTCCCTTCTGCTGTGCGATCTTTCCCAAAGTTATGGCACTGCGACGGCACACAGTCAGAAAACACGCAATTTCGTTGCCCAAGAAAAGAGGCAATAAAACGGACATTATGATGGTGTACAATTGCTCCATTTGCAATGGGGCGTTCTCCTCGCCATGGGGGCTTAATATTCACATGAGAAAGAAACATTCGCTCTCACAGATTGATAATGTGGTTGTGACGAGTGAGGTTGCGTCAAACATTGAGGTTGCTACTACAGGAAGCGCCTCAAACAAGGATGTCATGTCGATTAATGGAACTTCCGATTTGGATGTACTAAATTTGAGTGGTTCTGAGTATGGCGAAGAGGAAGGGCGTGATCTGACTGGAGGTGGTATATGGGGAGCTAAGGAATCGTTTATTGAGGCCTCAACAGGAGAATTAATGActaagtaa
Protein Sequence: MSVAVQPAPIFERNTVGDDSDDAYQEPLMECASIFIDTIGCFYFRCNICNESVDQFNLFKSHLQTHFHDPPFFCHFCDQSFDEFEWLIIHVNARECLLAHQDDIRDNNDDNHPGDQGEDDDTRNSDGNCTSIESNHSLVDGGGSDTDSVKYNKDSVQFYDNLCKLEEIPLIDCETIHLQKLESDVKIEDVNQKTLASESEWEEIDLNSDLWCEIDGMKNSTINNNKSVDSASDTHNGNTPVEINKCNNTATNFEEFLTSFQINLNRNNVEEECETKHETLTSLQEDEEIINGHESDLWEEVPICKNVLPDDGSKKKIPDDDVTDQRRDIKTKRKRGRPKQYSANNRCPPCEVCGKTFASYDYAQRHKLIHTGEKPFECNICGRRFSQKSSVKVHVLSHNRNVKNYGCDICGGKFASQNVLHKHMQRHSDIRPHKCELCGKGFALKSYLTYHMSSHMAEKPHKCNVCQKTFARKNYLKEHMQKKNVHIYQEKEFKCTKCISSFDTELGLKHHLKRHDLIGVQLPTEIHKCPFCCAIFPKVMALRRHTVRKHAISLPKKRGNKTDIMMVYNCSICNGAFSSPWGLNIHMRKKHSLSQIDNVVVTSEVASNIEVATTGSASNKDVMSINGTSDLDVLNLSGSEYGEEEGRDLTGGGIWGAKESFIEASTGELMTK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -