Scin010152.1
Basic Information
- Insect
- Sylvicola cinctus
- Gene Symbol
- zfh1
- Assembly
- GCA_963854165.1
- Location
- OY974084.1:2629409-2636949[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.0018 0.091 13.0 0.7 2 23 52 74 51 74 0.93 2 9 0.00053 0.027 14.7 1.1 1 23 126 148 126 148 0.96 3 9 2.4e-05 0.0012 18.9 1.9 3 23 156 176 154 176 0.96 4 9 2e-06 0.0001 22.3 5.0 1 23 185 207 185 207 0.99 5 9 0.00032 0.016 15.4 1.2 3 21 215 233 213 234 0.94 6 9 0.0002 0.0099 16.1 1.0 2 21 529 548 528 549 0.93 7 9 1.1e-05 0.00055 20.0 0.9 1 23 846 868 846 868 0.94 8 9 3.9e-05 0.002 18.3 7.3 1 23 874 896 874 896 0.98 9 9 0.05 2.5 8.5 7.0 1 21 902 922 902 923 0.96
Sequence Information
- Coding Sequence
- ATGTTGTCTTGTTTAGTGCCACGTTTCGGACAAGAGAACACGATCATGCCGTCTTCATCTGCGTTCTCTTTACAAaTTCCTTCATTGCCCTCAAACATCTCAAGGGAAGATGAAAACTCCTCAACATCCCACCACCCAGACTACAATTTCATTAAGTGCCCACATTGCTCACAAAACTTCTCCGAATTTGGTTCCCTAAAGGATCACATTGACAATGTTCACGCAATTGGTAAAATGTATTCCGATGAACACTCTGAGCATGCAGGCACCCCATCACCTCCAATCAGTCACGGCAATTTTAGCCACTCAATGATGTATAAAAGCTCGGATGACATGGGCCGATCGATGAGTCCGGGCTCGTCCATCGATGGACAGTATTCCTGCAGTCAATGTACTTCAATGTTTACCAGTCGTGATCAACTGGAAAAGCATGAGCTGTTGCACTCCCCCAATTCCACTGTgAATTGCAAAATATGCCACAAAACGTTTGCGAACGTTTATCGGCTGCAGCGTCACATGATAAGCCACGACGAGTCAGTGCAAATgcgtaaatttaaatgtgaggACTGCCCCAAGGCGTTCAAATTCAAGCACCACTTGAAGGAGCATCTACGCATTCATTCGGGCGAGAAGCCGTTCGGCTGCAACAACTGCGGCAAGCGCTTTTCCCATTCGGGCTCCTATTCCAGTCACATGACCTCGAAGAAGTGCATCAGCATGGGTCTCAAGTTGGCAAATGGTCGCAGTGTTGTTGGTAACGCCATGTCAGATAAGTTGAGTCAACAATTGAAACGTGGTGGTTACATGTCCCCGCAGATGCAAGGATTAGCAGGTCTAACAGCATCACTGGGTCACAGTAACATGACCAATGCTGCAGTACCAACAATGAGCcccaacaataataataacaataacaatagcaacaatattaataacaacaacaacagtcaAGCGTCATCCTATCTGCCAATGCTTCACAAGTACAACGGTTACGAAGCGATAAACGCAGCATTTTTGGCCTCGTTCCAAAACCCCTATTACTCAATGACCGCGGCAATGGATCCTCGGGCAGCCATCAATCCGTACAGTTTGCAACGATTCCTTGAATTGACAGCTGCTAACGCTGCATCCCAGAATACGACTCTTGATATACTTAAATCGGCGAATGCAGTTACGATTGGTAATAAGACGCCAAGCTTACAATCTGATCCCGAGGATATGATCGAGGAAGTTACGGAAGAAGATGAACCAAATAAGCTAGTTATGGATTTGGATGAGGAAGATGAGGAGCCAAAAAAATCAGATGAACCCGAGGCGAAAATTCCCGAAATGATAAAACAAACCGTAACCAATCATGCAAGTCCCAGAAAGGATTCGCATTTTAATTCGTTGCTATCTGTGACACAACGTTTAATGCAAGCCAATCTAATGAAGTTGGGATCAGCTGCAGCCGAAGCTTCTTTTATGCAACCTATTGAGCGTCCACCCTCCGTCGCATCGCAACATCAAGATATCAACGTGGACGTTGATGATGATCATAATGTTGAACAATTTACAGAACATACATCCagtaatgattttttaaagtgctCACGCTGTGGCAAAACATTTAACCATCTGACAGAGTTGAACCAACATGAGAAAGTGCTTTGTGGTATGATTGAGAAGCAGGAGAATTTAGACTTAATTCCAGTAAATGGAACATACAGTACGGTATCAGGGAGTGACGACGAATGCGATGATGCCAACAAATTGTCCAATGATGCTGAGCGCAAAGTAAGAGTGCGCACCTCAATTTCAGAAGAGCAACAATCAGTGTTGAAAGATCACTACGCCATTAATCCCCGTCCAAATCGGGAAGAATTTCGATCAATTGCTCAACGACTGATGCTTGACGCTAGGGTGGTACAAGTGTGGTTCCAAAACAATCGATCACGTGAGCGGAAGATGAATGGAACACATTTCTTGAAGCGTCCCTATGCATTGCCTGAAACATCAGCAACGCCAACACCCACACCAGTGTCGGTAAACACACAGGAAGATCAACCCTTGGATTTATCTGTTAAAAAGGATGCAATTGACTTGAGTCCTGCAAGTTCTCCTCGCTACGGTACGGCACCACAACAAAACGATGCAATGAAAAATGAAGTAATGAACTTGAGTAAAAGATCATCCCACCACAGTCCAACTCCAGACCGtccaaacaataaacatttattctaCAATGGTGCATCATTCATGGACAGACCGGCTGAGTCGTCGACATACATTCGACACACACCATCACCCAGCGAGGCAGTTCCCCGTCAGTATAATCCATTGGTGTTGCCCACTTCATCACTGAATTTTATACCAATGGAACGGCTACTGCAAATGACACCTGAAATGGCGCGCAATCCATTGCTGAAGATGGAGAGTCTGAGTCCCGGTTCGGAAAAGCGGTCATGGCGTGGCGATGAGTCGCACAGCTCACACGACGACGAGCTGTTGCATTTGTCGAAGAAAGTGAAACACGAACAGGAGATTGAGGGTCAATTTATTTGCGATCAATGCGACAAGGCGTTCAGTAAGCAGAGCTCGCTGGCGCGTCATAAATACGAACATTCTGgCCAACGTCCTTATAAATGTGTGGATTGTCCGAAGGCGTTCAAACACAAACACCATCTCACTGAACACAAGAGACTGCACAGCGGCGAGAAACCGTTCCAATGCTGCAAGTGCTTGAAGCGCTTCTCACATTCGGGGTCGTACAGTCAGCACATGAATCATCGCTATTCATACTGCAAGCCGTATAGGGAGTAA
- Protein Sequence
- MLSCLVPRFGQENTIMPSSSAFSLQIPSLPSNISREDENSSTSHHPDYNFIKCPHCSQNFSEFGSLKDHIDNVHAIGKMYSDEHSEHAGTPSPPISHGNFSHSMMYKSSDDMGRSMSPGSSIDGQYSCSQCTSMFTSRDQLEKHELLHSPNSTVNCKICHKTFANVYRLQRHMISHDESVQMRKFKCEDCPKAFKFKHHLKEHLRIHSGEKPFGCNNCGKRFSHSGSYSSHMTSKKCISMGLKLANGRSVVGNAMSDKLSQQLKRGGYMSPQMQGLAGLTASLGHSNMTNAAVPTMSPNNNNNNNNSNNINNNNNSQASSYLPMLHKYNGYEAINAAFLASFQNPYYSMTAAMDPRAAINPYSLQRFLELTAANAASQNTTLDILKSANAVTIGNKTPSLQSDPEDMIEEVTEEDEPNKLVMDLDEEDEEPKKSDEPEAKIPEMIKQTVTNHASPRKDSHFNSLLSVTQRLMQANLMKLGSAAAEASFMQPIERPPSVASQHQDINVDVDDDHNVEQFTEHTSSNDFLKCSRCGKTFNHLTELNQHEKVLCGMIEKQENLDLIPVNGTYSTVSGSDDECDDANKLSNDAERKVRVRTSISEEQQSVLKDHYAINPRPNREEFRSIAQRLMLDARVVQVWFQNNRSRERKMNGTHFLKRPYALPETSATPTPTPVSVNTQEDQPLDLSVKKDAIDLSPASSPRYGTAPQQNDAMKNEVMNLSKRSSHHSPTPDRPNNKHLFYNGASFMDRPAESSTYIRHTPSPSEAVPRQYNPLVLPTSSLNFIPMERLLQMTPEMARNPLLKMESLSPGSEKRSWRGDESHSSHDDELLHLSKKVKHEQEIEGQFICDQCDKAFSKQSSLARHKYEHSGQRPYKCVDCPKAFKHKHHLTEHKRLHSGEKPFQCCKCLKRFSHSGSYSQHMNHRYSYCKPYRE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01381986;
- 90% Identity
- iTF_01381986;
- 80% Identity
- iTF_01381986;