Scin001205.1
Basic Information
- Insect
- Sylvicola cinctus
- Gene Symbol
- -
- Assembly
- GCA_963854165.1
- Location
- OY974082.1:16016820-16018934[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 5.9 3e+02 2.0 0.1 2 12 113 123 112 129 0.74 2 13 2e-05 0.001 19.2 0.6 3 23 221 241 219 241 0.96 3 13 0.013 0.66 10.3 1.9 2 19 248 265 248 270 0.94 4 13 0.00072 0.036 14.3 0.5 1 23 278 300 278 300 0.98 5 13 0.019 0.95 9.8 0.8 1 21 312 332 312 333 0.94 6 13 0.00052 0.026 14.7 3.4 1 23 339 361 339 361 0.98 7 13 0.00014 0.0072 16.5 2.5 3 23 368 388 366 388 0.92 8 13 0.082 4.1 7.8 0.2 2 23 394 416 393 416 0.95 9 13 0.028 1.4 9.3 0.1 3 23 424 444 423 444 0.96 10 13 0.29 15 6.1 0.9 1 20 450 469 450 471 0.92 11 13 0.071 3.6 8.0 0.0 2 23 490 512 489 512 0.94 12 13 2.5e-06 0.00012 22.0 2.0 2 23 530 551 529 551 0.97 13 13 3.2e-07 1.6e-05 24.8 0.6 1 23 557 579 557 579 0.95
Sequence Information
- Coding Sequence
- ATGGGTGACATCCGCATAACAAAAAggATGCTCCAAATGGACATGCAACAAACATGCCGGGCATGTTTAAGTCAACTTCGTGGTTCCAAAGAGCCCCTGTTCGGATCCACACTCTTTAATCTGTTTAAGCAATGCACCCATTTGAAGCCAGAAGATGACAACGTTATGCCAAAGTTTCTCTGTACAAAGTGTCAATCCTTTTGTGCAGCCTGGTCCATTTTCAAAGagaattgcattcaaaatgaGCACATCCTtagagaaattattaaaatgcggACTCCAATTACTGGTtgcttttcaaattattctATTGAGGAGGATCAAGAAACATCAATCCAATGCACTGATTGTGGTTTGTATCTTGCCAAGGAATCAAAGCTGGATCATGTTTGTTTGGAAGCAAAGATGCCTAAATTAGAGTCGAGAGTGGATGATTTAATTGAGAATGATCCCCTTGAGCCGTGTGAAAAGGATGGAAAAGTAATTGAGGCGGATGATGATCCAAATGGCGGTGATTGTGATGAAGTGAATGAAGATTCTGAAAGTTGTGATGAAAGTAATGAAGATTCTGATCCACAAAGTAATCCTGGTAAAAGAAAAACAGGAGTGGAAAGAAAGGAACCTAAGAAACGTGGACGAAAACCAACTTTGGATACAATTTGTAAGCAATGTGGAATGGCTTTTAAAAGGCccaattatttaagaaaacatgAACTTTCCCACACAATAGTTAAGgACCCTCGCTGTCTTAAATGCAACCGTTCATTTTCCAGCGCCACAGCATTAGAGGAACACTGCACTGATGACCATCAAATGGACATCCTTAAAAATTTCAGTTGCATGTTTTGCGATGGAATGTTTGCCACATACGGCATGCTGATTAAACACATGTACACTCACGAGCAGGCCCTCGAAGTGCTACCCAACAACAAGTACCAATGCCCCAAATGTGATTGCACCAAATCATCATCCATCTTGCTGGAGAAGCATATTGAAAAGTGCGTCCCATTCAGCCACACATGCACCACATGTGGACACATCGCCAAAAATGCCACTCTCCTGAAAACCCACATGCGATCTCACAATGTAAGAGAGCACCTTTGCAGTACATGTGGCAAAGCCTTCAAGACCAAAAACCTGTTGAGGAATCATTTTGCATTGCACGTTGGTAAAACGGATAAGTGCGACCTTTGTCAGCAATATTTTTCAGGACCCCTTCGTCTTAAGTATCACATCGAAAGGGTGCATTCAACAACGAAACGGATGCTTTGCCATGTTTGCTCGGTTGATTTTAAGGATCCTattGCATTCCGTGCACACGTTGCACTCCATGAAAACCCAAATTTGCATCAATGCAAAAAATGCCAGTCCGTGTTTCAAGTGCAACTGCAATTTGAAAATCATGTCATCAAATGCCGAGGAAGGATGCGACAAAATTCACGAGTTCGAATTGAAACGGTTCGGGTAATGTGCTCTGTTTGTGGCGATGGGTTTCCAACACTTCCTGCGTTGCGACTGCATTTGATGGAGTTGCATGCAAAAGATGGGGTGGACATTGAGGCTGCCATTGagagtattaaaaatattaaatgcgaTTTGTGTGATAAACGGTTTGCTTCTCATAAGAATCTCAAACTCCATATGAATGTGCATTCAAGTAATAAACCGTTTGAGTGCGATTACTGCGATAAAACGTTTCGGGACGCCACCAATTTGAGGTACCACATGGTGGCGCATGAAAAACGGGAGGAGTCTTTTTGTAATAGTCAGCAACAAAGTGACCAACATGCTCAATTTGATAATATTATGGGAATATCGCAGTTTTAG
- Protein Sequence
- MGDIRITKRMLQMDMQQTCRACLSQLRGSKEPLFGSTLFNLFKQCTHLKPEDDNVMPKFLCTKCQSFCAAWSIFKENCIQNEHILREIIKMRTPITGCFSNYSIEEDQETSIQCTDCGLYLAKESKLDHVCLEAKMPKLESRVDDLIENDPLEPCEKDGKVIEADDDPNGGDCDEVNEDSESCDESNEDSDPQSNPGKRKTGVERKEPKKRGRKPTLDTICKQCGMAFKRPNYLRKHELSHTIVKDPRCLKCNRSFSSATALEEHCTDDHQMDILKNFSCMFCDGMFATYGMLIKHMYTHEQALEVLPNNKYQCPKCDCTKSSSILLEKHIEKCVPFSHTCTTCGHIAKNATLLKTHMRSHNVREHLCSTCGKAFKTKNLLRNHFALHVGKTDKCDLCQQYFSGPLRLKYHIERVHSTTKRMLCHVCSVDFKDPIAFRAHVALHENPNLHQCKKCQSVFQVQLQFENHVIKCRGRMRQNSRVRIETVRVMCSVCGDGFPTLPALRLHLMELHAKDGVDIEAAIESIKNIKCDLCDKRFASHKNLKLHMNVHSSNKPFECDYCDKTFRDATNLRYHMVAHEKREESFCNSQQQSDQHAQFDNIMGISQF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -