Scin013016.1
Basic Information
- Insect
- Sylvicola cinctus
- Gene Symbol
- -
- Assembly
- GCA_963854165.1
- Location
- OY974084.1:40786661-40787996[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 7.7e-06 0.00039 20.5 3.8 1 23 163 185 163 185 0.96 2 8 0.00024 0.012 15.8 3.2 2 23 192 213 191 213 0.96 3 8 6e-06 0.00031 20.8 1.4 2 23 220 241 219 241 0.97 4 8 1.7e-05 0.00085 19.4 0.2 2 23 248 269 247 269 0.96 5 8 8e-05 0.004 17.3 8.0 1 23 277 299 277 299 0.98 6 8 2.6e-05 0.0013 18.8 1.6 3 23 307 327 305 327 0.94 7 8 0.002 0.1 12.9 1.5 3 23 335 355 333 355 0.98 8 8 3.7e-07 1.9e-05 24.6 1.9 1 23 361 383 361 383 0.98
Sequence Information
- Coding Sequence
- ATGGAATCAAATCTTCTGTGTCGATCTTGTCTGTGTTTATCGGAACCCGAAACTCTTACATCATTGGATGCAACATTAAGTTCAATTaacatgaaaacaatttggGAAGGGCTTTGTCATTGTACAAGTTTAAATCTCAGAGACATCCAAGACTCTAGAATACCACAAAGCATTTGCCAACAATGTCTCGATGAACTTATCGTCACATTTAGGTTTCGGCAAACATGCGAGGATTCAGAAAATATCTTAAAGCAAAGTCTTTTTAATACGAGAAAAGGAGAATCCGAAGAATTGCAAACAGAAAAATTGCAAGGAAATGTAAAAGAGAAAGTCGACAAATCTGGCTTTCAACCATCAATAGAGGCCAACCCATTAGTAGTTACTCAAACCCTTCATAGACCAGAAACAGATGTTGCGATATTTTCAAAACGAAGACGAAGAAAATACAAAGACTCTCCTGACCAAGTATCTTTAGAAAAAAAGCTTTACATGTGCGAAGAATGTGGTAAAACATTTGCCCGCCTACATGATCTTCATCGTCACCACATTGCTCACACCAAAGATCGACCACTTAATTGTGAAATATGTCAAAAATCCTTCAAATCCCATGGTGCCATCCACCAGCACATGTCCACGCACAATGACACAGAAAAGAAAGAATGTTCCATTTGTCAGAAGCAATTCTCCTTTGCTAGTGCACTCCGTCACCACATGGAAGTGCATGCCGATGAAAAAACACTTCAATGTGAATTTTGTGATAAACGATTTGGCACTGAGTACGCCCTAAAGCAACACATCGCCATACACAAACGCATGACACTGCGAAAGTTTCAGTGTGATCAGTGTGGTGTCTCATTTAAGCATGAATGTCATCTGAAGCAGCACATGTTCACGCATATAGAGCAGCGACCATTCGGTTGTCCCCAATGTGGCAAGTCTTTCAAAACTAGACACGATTTGGGTAGACATTCAATTTATCATGATGGGAAGCGAGCGTTCGGCTGTAGGCATTGCCCGAAAGCGTTTTTGCTCAAGAGTGCTTTGGATCGACACCTTAGAACACACACAAAGGAAAAGCCTTATGTATGCACAATTTGTGAAAAACGATTTGCATATCAATCCTCGCTGAAAAAGCATTACTCAACACACAAGGAGATATTACACACATGTGATCAGGTGAAACATGACATTGTGATTCAAACTGGAGCTCAAGATGTTCTCATGGAACCTACGATTTTATCAATAAGTACCGTTGCTGGTAAGTGA
- Protein Sequence
- MESNLLCRSCLCLSEPETLTSLDATLSSINMKTIWEGLCHCTSLNLRDIQDSRIPQSICQQCLDELIVTFRFRQTCEDSENILKQSLFNTRKGESEELQTEKLQGNVKEKVDKSGFQPSIEANPLVVTQTLHRPETDVAIFSKRRRRKYKDSPDQVSLEKKLYMCEECGKTFARLHDLHRHHIAHTKDRPLNCEICQKSFKSHGAIHQHMSTHNDTEKKECSICQKQFSFASALRHHMEVHADEKTLQCEFCDKRFGTEYALKQHIAIHKRMTLRKFQCDQCGVSFKHECHLKQHMFTHIEQRPFGCPQCGKSFKTRHDLGRHSIYHDGKRAFGCRHCPKAFLLKSALDRHLRTHTKEKPYVCTICEKRFAYQSSLKKHYSTHKEILHTCDQVKHDIVIQTGAQDVLMEPTILSISTVAGK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -