Basic Information

Insect: Sylvicola cinctus
Gene Symbol: -
Assembly: GCA_963854165.1
Location: OY974084.1:45045243-45047331[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 1e-05 0.00053 20.1 2.8 1 23 236 258 236 258 0.96

2 10 0.00016 0.0079 16.4 0.7 3 23 266 286 264 286 0.97

3 10 1.7e-06 8.7e-05 22.5 0.4 1 23 313 335 313 335 0.92

4 10 5.9e-06 0.0003 20.8 0.3 2 23 342 363 341 363 0.97

5 10 1.5e-06 7.4e-05 22.7 4.0 1 23 384 406 384 406 0.96

6 10 9.6e-05 0.0048 17.0 1.1 2 23 413 434 412 434 0.96

7 10 2.5e-05 0.0013 18.8 3.2 1 23 466 488 466 488 0.95

8 10 2e-05 0.001 19.2 0.9 2 23 495 516 494 516 0.97

9 10 0.034 1.7 9.0 3.1 1 20 522 541 522 544 0.94

10 10 0.0069 0.35 11.2 1.1 3 23 552 572 552 572 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	1e-05	0.00053	20.1	2.8	1	23	236	258	236	258	0.96
2	10	0.00016	0.0079	16.4	0.7	3	23	266	286	264	286	0.97
3	10	1.7e-06	8.7e-05	22.5	0.4	1	23	313	335	313	335	0.92
4	10	5.9e-06	0.0003	20.8	0.3	2	23	342	363	341	363	0.97
5	10	1.5e-06	7.4e-05	22.7	4.0	1	23	384	406	384	406	0.96
6	10	9.6e-05	0.0048	17.0	1.1	2	23	413	434	412	434	0.96
7	10	2.5e-05	0.0013	18.8	3.2	1	23	466	488	466	488	0.95
8	10	2e-05	0.001	19.2	0.9	2	23	495	516	494	516	0.97
9	10	0.034	1.7	9.0	3.1	1	20	522	541	522	544	0.94
10	10	0.0069	0.35	11.2	1.1	3	23	552	572	552	572	0.96

Sequence Information

Coding Sequence: ATgcaattcaaatcaaatgtGTGCCGAGCGTGTTTGTCAGAAGCGCGCGAAATCGACCTGACTGCACTGGAAGAACAATTCAGCAGCACGTATAGGGAGACAATTTGGGAAGGCTTATGTTATTGCTCTGAGCTAGAACCAGACAAGGACACAGAACGAATGCctcaaaaaatttgcaaacattgTCTCAGTGAATTGAAAGCAGCGTTTAAGTTTAGACGGAAATGTGAGGAAGCTGAGAAGATGTTGCGGCGCAGACTGAGGGATGAATTTGAGCTGGAACGATTGAGTCGTAAAGTGACGGAAATTGAGTTGCAAATTGATCCACAGGATTTAAAATGTGAGGAGTTACATTATGATAGTCGTGTAGAAGAAGataATTTGGATATTAAACCAAAAGAATTGGATAATCAAACTTATGGTGATGCAACAGatgatgcaatttattgtgagGTGCTAATTAATAAAGCTGAAGATGAGTCAATAGAATCTACAGAAAAGGACACACTTTCATATTATGAATCAACGGAAGACTCATTATTggatataattgaaaaagaaaatgtttcagACGAAATTGATGCAATCCATACTACACCAGAATTAAGGTCTCGAGTAAATAGAAAGCGCTTGAAAAggaaaactaaacaaaattcCGATGAAGATGCAGAAGATGGGAACTGTAACGATCCTTCAAAAAAGCGTCACATTTGTGAAACGTGTGGCAAAACCTTTGTATTCAGACAGAATTTGAAGCGACACAAATTAGTGCATACTTCAGATCGTCCTTTTGGTTGCGAAATTTGTCAAAAGTCCTTTAAATCCCGCGCTGGAATACGTCAGCACATGTTTTCCCATAGTAAAAGCGATATAGAAGACATTGAAGCAGCCAAAAAAGCATACCAAGAAAAAATTGAGGAAGAAATTgagaaaccatacaaatgccCACGATGTCCGAAATCATTTGCACGGCGAGCTGATCTTCGACGCCATGGGTATGCACACACTGAGGAGCGACCACTGAGATGCAATGAGTGtgGTAACACTTACAAAAGTCCTGGCAATTTGCGACAACATTTACTCTCCCACAAAAAACCAGAAGAGAAGCCATCCTTCATCCCTATGGTAGAGATACCATCCGATAAGCCACACATTTGCACTATGTGTGACAAGTCATTTGCCCGCCGTCATGACCTCAATCGTCATATGTACGTCCACACTGTGGAGCGACCTTTGGAGTGTGAATTTTGTgatAAACTGTTTAAAACAAGAAATGCTTTGCGCTCACATCTCTACACTCATGGACGGTTAGCCTTTGAGATGGTGTCACTTAAAGCCAAGGAGCGAAAAAAGCGAAGCGATGTGGATCGGATGCGTGCCATTCAGGAGAAGCGTCATATGTGTGATAAGTGTGGCAAGACATTTGGAAGGCGGCATGATTTGATTCGTCATGAATATGTTCACACGTCGGATCGACCGTTAGAATGTGAAATTTGTCatAAATCATTTAAGTCACGTGGTGCAATTCGTCAACATTTAGCAACACACTTCACTGCATTTAAACACACCTGCGACAAATGCATGAAACAATTTGCATTCCCTAGTGCTTTGCGGTTGCATATGGAGTGTCATGCATCCAATAAGTGCATGGGTTGTCCTTTTTGTGAGAAGAAATTCGGCACGGAGTATGCGTATAATAAGCATGTTGCACATCATAggagaaaacaacaaattccataa
Protein Sequence: MQFKSNVCRACLSEAREIDLTALEEQFSSTYRETIWEGLCYCSELEPDKDTERMPQKICKHCLSELKAAFKFRRKCEEAEKMLRRRLRDEFELERLSRKVTEIELQIDPQDLKCEELHYDSRVEEDNLDIKPKELDNQTYGDATDDAIYCEVLINKAEDESIESTEKDTLSYYESTEDSLLDIIEKENVSDEIDAIHTTPELRSRVNRKRLKRKTKQNSDEDAEDGNCNDPSKKRHICETCGKTFVFRQNLKRHKLVHTSDRPFGCEICQKSFKSRAGIRQHMFSHSKSDIEDIEAAKKAYQEKIEEEIEKPYKCPRCPKSFARRADLRRHGYAHTEERPLRCNECGNTYKSPGNLRQHLLSHKKPEEKPSFIPMVEIPSDKPHICTMCDKSFARRHDLNRHMYVHTVERPLECEFCDKLFKTRNALRSHLYTHGRLAFEMVSLKAKERKKRSDVDRMRAIQEKRHMCDKCGKTFGRRHDLIRHEYVHTSDRPLECEICHKSFKSRGAIRQHLATHFTAFKHTCDKCMKQFAFPSALRLHMECHASNKCMGCPFCEKKFGTEYAYNKHVAHHRRKQQIP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -