Basic Information

Insect: Sylvicola cinctus
Gene Symbol: -
Assembly: GCA_963854165.1
Location: OY974083.1:32690157-32692589[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 5.6 2.8e+02 2.0 0.8 1 23 114 136 114 136 0.83

2 12 0.00012 0.0061 16.7 0.4 1 23 342 365 342 365 0.96

3 12 4.3e-06 0.00022 21.3 1.5 2 23 404 425 404 425 0.98

4 12 0.11 5.5 7.4 3.2 1 23 428 450 428 450 0.94

5 12 5.3e-05 0.0027 17.9 1.6 2 23 461 483 460 483 0.94

6 12 0.00032 0.016 15.4 0.3 1 23 490 512 490 512 0.97

7 12 0.0079 0.4 11.0 1.6 1 23 518 540 518 540 0.94

8 12 6.6e-07 3.4e-05 23.8 2.0 1 23 546 568 546 568 0.99

9 12 1.3e-05 0.00066 19.8 0.2 1 23 574 596 574 596 0.97

10 12 9.7e-06 0.00049 20.2 2.2 1 23 602 624 602 624 0.99

11 12 1.6e-05 0.0008 19.5 1.3 1 23 630 653 630 653 0.98

12 12 3.8e-05 0.0019 18.3 6.3 2 23 660 681 659 681 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	5.6	2.8e+02	2.0	0.8	1	23	114	136	114	136	0.83
2	12	0.00012	0.0061	16.7	0.4	1	23	342	365	342	365	0.96
3	12	4.3e-06	0.00022	21.3	1.5	2	23	404	425	404	425	0.98
4	12	0.11	5.5	7.4	3.2	1	23	428	450	428	450	0.94
5	12	5.3e-05	0.0027	17.9	1.6	2	23	461	483	460	483	0.94
6	12	0.00032	0.016	15.4	0.3	1	23	490	512	490	512	0.97
7	12	0.0079	0.4	11.0	1.6	1	23	518	540	518	540	0.94
8	12	6.6e-07	3.4e-05	23.8	2.0	1	23	546	568	546	568	0.99
9	12	1.3e-05	0.00066	19.8	0.2	1	23	574	596	574	596	0.97
10	12	9.7e-06	0.00049	20.2	2.2	1	23	602	624	602	624	0.99
11	12	1.6e-05	0.0008	19.5	1.3	1	23	630	653	630	653	0.98
12	12	3.8e-05	0.0019	18.3	6.3	2	23	660	681	659	681	0.97

Sequence Information

Coding Sequence: ATGGCTAAACGCaacacgaaaaaaaagaacaccCCACTCAAAAAAACAAGTGCACCCTTGTTAAAACCACCAACAGTGATCACCAACATAAAAGCAGAACCTGATCCTCTAGAAATCATGTGCATTGAAAACATTATTGACATTCCAGTTGTCAATATTCCAGCTCACAAGGCACAACTGGAATTTGCATCAAGAATAACAAAACCACCATCTAGAAATGACGATGACGGTGTTTTTGTATCTGTGGCAAGTAAAACAAATGATAACTATAACAAAACTGCACTTCCGTCGGAAAAGGACACAAATGCCACACAAAAACCAATTGCTAGATCTTTTGTGCATGAATGTGTAATTTGCCATAAAATCGTCCATGGTGGTGCAGAAATGATTGCACATAGCAAAATTCATGGATCTCCCTCGGGAATGCTGTTTCGATTTGTTGAATCAAAGCAGCAGGAAGTTAATGAGGATAATGATGATGTGGTTAGTGTAACATCATACACCAGTAATGGCAATGGCATGGATAACGTTTTGGATATTTCATCAGATTCATCAATATTATCGAAAAATGAGAACAAGGCATCCAAAACCACTGAGTccaatacattaaaatttaatggccATAATCAGACTCAAGATTTGTTTGACAATATCCTTGCTCCATCGGAATCAAAGACTAAGAATAAGGCATCCAAAAAAGACCTCACCATTGTGTccaatacattaaaattgaacggGAGCAATGATCAGACTCaagatttatttgaaaatattcttGCGCCATTGGAATCGGAAACGAATAGCCCAAACAGCAATAGTAGATCCCTAGAAGAGAATAAATGTTGCATATGCGGTCAAACAATTTTAGGTAGGGTGTGTTGGTTGCAACATAAGAAGGAGCACAAGACTGGAATAGCCGTTATTGAACCAAAATCAGATACTGATAAAATGGAGGACATCAGTTTAGTAAACTATTCCACATATGATCCTGAAGATGAATGCGAACCTAAAAAATCAAAGCTGTTTAAATGTGATTCTtgcaaaaaagaatttattaccaaaaacGAACTCGCCGCACACACCATAATCACACATCAAACCAGTGTGGACCCATCTTTTGAGTATTTAACTCCccaacaaaaaaggaaacgaCTAACAGAAAAACTTTATGACCAATATACGTCGTTGCCACAACCCAGAACAACCGAAAAATGCGATTACTGTGAAGAAGAATTTACTAACAAATATCTTTTAAGAAGCCACCAAAGGTCTCATGTTAGATTCAAATGTAAGGATTGTGGCAGATGGTTCCAATTTGAAAGGTTCTACAAAAGCCACCTGTTAAAGCACGCCACACCTCCGCTTCCATCTGTGGCTCTTCCCTGTGACCAGTGTGAGCGAGTGTTTCGAAGCAACACTCATTTAaaggcacacaaaaaaaatgttcacgaACACACTGAGCGCACTCACAAATGCGAAGTGTGCGGACTGCAGTTTAAAAGCGTGGCCGCATTGAAATCACACGGGATTACACACGAGCAGACACTGGACTTCAAATGCTCGCTGTGTGGCAAAGGATTTGGTACTAAGCATCGTGTACTATTGCACGAGGAGCGACACGCTCGCACTTATCGGTTTGAGTGCTCGGTGTGTCACAAAAAATTCATCACTAAAAGTGTATTGATTGTTCACATGCGAACGCACACGGGCGAGCGTCCGTTTGCTTGCACTGAGTGTCCAGCCAAATTCGCTGATAAAGGCAATTTAAGACAACACTTTCGCATTCACACGGGTGAAAAACTTTATAAGTGTGACATGTGTGACAATGCGTACACACAAAAGAGCTCCCTGAACACACACAAGAAGACGCACATAACGTTCAAACCGTTTGAGTGTCGACATTGCGGGAAGCAGTACAGTGAGGAGGAGGAGTTGCAGAATCACCTCAGAAAAGCTCACAATGAGGATGTGTGGATTAAGTGCAAGTACTGCGATcagaaatttacaaatttttcacaCTTTAAATCGCACCAGAAGATGCATTCCGATGTTAGAACAAAAAGGAGCAATCCCAGGATGGAGGAGTCCATGAGGCAATTACAAATGCAACAGGAAGCAGAAAAACGAATAAATTCAAGTGAggaaagttaa
Protein Sequence: MAKRNTKKKNTPLKKTSAPLLKPPTVITNIKAEPDPLEIMCIENIIDIPVVNIPAHKAQLEFASRITKPPSRNDDDGVFVSVASKTNDNYNKTALPSEKDTNATQKPIARSFVHECVICHKIVHGGAEMIAHSKIHGSPSGMLFRFVESKQQEVNEDNDDVVSVTSYTSNGNGMDNVLDISSDSSILSKNENKASKTTESNTLKFNGHNQTQDLFDNILAPSESKTKNKASKKDLTIVSNTLKLNGSNDQTQDLFENILAPLESETNSPNSNSRSLEENKCCICGQTILGRVCWLQHKKEHKTGIAVIEPKSDTDKMEDISLVNYSTYDPEDECEPKKSKLFKCDSCKKEFITKNELAAHTIITHQTSVDPSFEYLTPQQKRKRLTEKLYDQYTSLPQPRTTEKCDYCEEEFTNKYLLRSHQRSHVRFKCKDCGRWFQFERFYKSHLLKHATPPLPSVALPCDQCERVFRSNTHLKAHKKNVHEHTERTHKCEVCGLQFKSVAALKSHGITHEQTLDFKCSLCGKGFGTKHRVLLHEERHARTYRFECSVCHKKFITKSVLIVHMRTHTGERPFACTECPAKFADKGNLRQHFRIHTGEKLYKCDMCDNAYTQKSSLNTHKKTHITFKPFECRHCGKQYSEEEELQNHLRKAHNEDVWIKCKYCDQKFTNFSHFKSHQKMHSDVRTKRSNPRMEESMRQLQMQQEAEKRINSSEES

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -