Basic Information

Insect: Sylvicola cinctus
Gene Symbol: -
Assembly: GCA_963854165.1
Location: OY974083.1:28819247-28822728[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 3.6e-06 0.00018 21.5 1.7 1 23 329 351 329 351 0.98

2 9 4.3e-08 2.2e-06 27.6 1.9 3 23 359 379 357 379 0.98

3 9 7.3e-05 0.0037 17.4 0.6 1 23 385 407 385 407 0.98

4 9 4.7e-06 0.00024 21.2 0.9 1 23 413 435 413 435 0.98

5 9 2.6e-05 0.0013 18.8 1.7 2 23 546 567 545 567 0.96

6 9 2.3e-09 1.2e-07 31.6 1.6 1 23 573 595 573 595 0.98

7 9 0.0018 0.091 13.0 0.6 3 23 603 623 601 623 0.97

8 9 0.00011 0.0056 16.8 0.9 1 23 629 651 629 651 0.99

9 9 0.022 1.1 9.6 0.8 1 23 657 681 657 681 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	3.6e-06	0.00018	21.5	1.7	1	23	329	351	329	351	0.98
2	9	4.3e-08	2.2e-06	27.6	1.9	3	23	359	379	357	379	0.98
3	9	7.3e-05	0.0037	17.4	0.6	1	23	385	407	385	407	0.98
4	9	4.7e-06	0.00024	21.2	0.9	1	23	413	435	413	435	0.98
5	9	2.6e-05	0.0013	18.8	1.7	2	23	546	567	545	567	0.96
6	9	2.3e-09	1.2e-07	31.6	1.6	1	23	573	595	573	595	0.98
7	9	0.0018	0.091	13.0	0.6	3	23	603	623	601	623	0.97
8	9	0.00011	0.0056	16.8	0.9	1	23	629	651	629	651	0.99
9	9	0.022	1.1	9.6	0.8	1	23	657	681	657	681	0.95

Sequence Information

Coding Sequence: ATGGCCATCAACTTTTCAGCGTCATTCGCTGCTTGTTTAGCGGCTGGGCTTAAAGTTCCCCGACAGATAATGTACTGCATATCTCAAGATACCGGAGCACCATATGTTTTGTACAAGGACTCCCAAGAAACCGCTGCCGCTGCCGCAGCAGAGCGTGGCGTACAATTGGCTAGTGCTCAATGGGCCAGTAATGGTTCAGCTTCCGACGTTTATCCATCAATGCAACAGAGCCCACAGCAGGCACATCTTTCCAATCACCATGTGCAGCAGCAAGCTGTAGCACAGATTGCGgcacaacagcagcagcaacagcaacagcagcaacagcagcaacaacaacagcaacaacagcagcagcaacaacaacaacaacaacagcagcaacaacaacaacagcagcaacatcaGCAAGTCGGATCACAAAGTCCAACAAATGAtgatcaacaacaacagcgtGGGGGTGACCCACATGGAAGTGCAGGACTTTCGTCACCAGCCACTAGCCCATATCCTCAACAAAGTAGTGGAGCTGGACAAGAAATGGACGACGATGTAGTGATAAGTCagGTGCAATCCATGCAACATACCCAGCAAGTGTCAGTGGGCCAACCAAACCAGCAGCCATCACCTGAACAAAACATTGACATGACCactgaacaacaacaacaagctGCTGTAGCAAATCAGCAAACAAATCAAGCTTCTTCGACTCAACAGCCGGCCGGCCCACAATGCTTCACTGACCCTCCACAACAGGcagaattgaattattatgcaCAACGCCATTCCAGTGTACAAGGCACAATGTTGGCACCACCCGGTTTTCCTCCGTTACACTATTTGAATAAGCCCGGTCTGCTTCCCGGCATGAGCGGAATGGATCAAGCCGGTCTCGAGCAATATGCGATGCCGGATCTGTTGCCCGGCCATCAAATGCATCAGACGACAGCGGCCACGACCAAAGTGAAATCCGAACTGCGTTTGTTCAAGTGTCTGACGTGCGGCAAAGACTTCAAGCAGAAGAGCACATTGCTTCAGCACGAGCGCATTCACACCGATTCCCGCCCATTTGGATGTCCCGAATGTGGAAAGCGATTCCGACAGCAGTCACATTTGACACAGCATCTGCGTATCCATGCCAACGAGAAACCGTACTCATGTCTGTACTGCCCGCGAAGCTTTCGTCAACGTGCCATACTTAACCAGCATCTGCGCATTCATTCGGGTGAGAAGCCCTACGCATGCCCGGAGTGCGGCAAGCACTTCCGTCAGAAGGCCATCCTCAATCAACATGTGCGCACCCATCAAGACGTTTCCCCACACCTTGTTTTCAAGAATGGTCCCAATGGACCCACACTATGGCCCCAAGATATGCCATTTCCTCCTGAGGATGGCGATACCAAAAATGAAGCCGGATACGCAGATGATGCATCTCAAGGAACACCGGAATCGCGCGGATGCTTTTCACCAGAAGGCGGCATTGGATATCaagcatattttaaagacGCCAAAGGCGTCAATCACTCTGTTTTTGGTGCAAATTTGGGATCACTTCAGTATCTGAAACAAGGTCAAAAGGGTATGCTTCCGGATGTTATTCAACACGGTAGATCAGCGGGAATGCCATTGTATGTGCGGTGTCCTATATGTCAAAAAGAGTTCAAGCAAAAGAGTACACTCCTGCAACATGGTTGTATTCACATAGAGTCACGTCCCTATCCGTGTCCGGATTGTGGAAAACGGTTCAGACAGCAGTCACATTTAACTCAACATTTACGAATTCACACTAATGAAAAGCCGTACGGTTGCCTGTATTGTCCGCGCTTCTTCCGACAGAGAACCATTCTGAATCAGCACATTCGTATTCATACTGGAGAAAAACCCTATAAATGCGGTCAGTGCGGGAAGGACTTTAGACAGAAAGCCATTCTGGATCAGCATACGCGAACACACCAGGGAGATCGTCCATTTTGCTGTCCAATGCCAAATTGCCGTCGTCGATTTGCCACTGAGCCCGAGGTTAAGAAACACATCGACAACCATATGAATCCTCATGCAACCAAGGCACGTCGTGCAACAACAGCTTCATCGACAGCGGcggctgcagcagcagcagctgcaACGATCGCAAGCGTCGTCAACAAAGAAATTGTTCCATCAGCTGCAACAACTCCAGTGACAGCTGCCACACCGTTCCACACCACAATCGACAAACAAACGAACCTGATTCCACGTGTTGCTCCTGTTGTAAAACACGAATTGTATTTCCCACAGTGTTACGCACCGCCATTTAATCAAGCATTTGGAGGACAACCCCAgcagcatcaacaacaacaacaacaggcTAACGGTGCCGGCGGAACAGTTAGCGGTGGTGTTGTCAGTGTTGGAAATATTGTCAGTGTTGGAGCCAGCATCAGCAACAATGGTGTAAGTGGGACAACTTCAGCCATCCCAACGTCTGCCACATCAGTACCATCAGCAAGTGGCGCAGTTGCCTCCATTACACAGTGA
Protein Sequence: MAINFSASFAACLAAGLKVPRQIMYCISQDTGAPYVLYKDSQETAAAAAAERGVQLASAQWASNGSASDVYPSMQQSPQQAHLSNHHVQQQAVAQIAAQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQHQQVGSQSPTNDDQQQQRGGDPHGSAGLSSPATSPYPQQSSGAGQEMDDDVVISQVQSMQHTQQVSVGQPNQQPSPEQNIDMTTEQQQQAAVANQQTNQASSTQQPAGPQCFTDPPQQAELNYYAQRHSSVQGTMLAPPGFPPLHYLNKPGLLPGMSGMDQAGLEQYAMPDLLPGHQMHQTTAATTKVKSELRLFKCLTCGKDFKQKSTLLQHERIHTDSRPFGCPECGKRFRQQSHLTQHLRIHANEKPYSCLYCPRSFRQRAILNQHLRIHSGEKPYACPECGKHFRQKAILNQHVRTHQDVSPHLVFKNGPNGPTLWPQDMPFPPEDGDTKNEAGYADDASQGTPESRGCFSPEGGIGYQAYFKDAKGVNHSVFGANLGSLQYLKQGQKGMLPDVIQHGRSAGMPLYVRCPICQKEFKQKSTLLQHGCIHIESRPYPCPDCGKRFRQQSHLTQHLRIHTNEKPYGCLYCPRFFRQRTILNQHIRIHTGEKPYKCGQCGKDFRQKAILDQHTRTHQGDRPFCCPMPNCRRRFATEPEVKKHIDNHMNPHATKARRATTASSTAAAAAAAAATIASVVNKEIVPSAATTPVTAATPFHTTIDKQTNLIPRVAPVVKHELYFPQCYAPPFNQAFGGQPQQHQQQQQQANGAGGTVSGGVVSVGNIVSVGASISNNGVSGTTSAIPTSATSVPSASGAVASITQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -