Basic Information

Insect: Sylvicola cinctus
Gene Symbol: prg
Assembly: GCA_963854165.1
Location: OY974082.1:54821989-54823899[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.083 4.2 7.8 2.0 3 23 175 195 173 195 0.95

2 10 0.41 21 5.6 5.0 1 23 201 224 201 224 0.95

3 10 0.00015 0.0075 16.4 2.2 1 19 230 248 230 252 0.93

4 10 1.2e-07 5.9e-06 26.2 3.4 1 23 258 280 258 280 0.98

5 10 5.6e-06 0.00028 20.9 1.8 1 23 286 308 286 308 0.97

6 10 2.5e-06 0.00013 22.0 3.2 1 23 314 336 314 336 0.99

7 10 8.8e-07 4.5e-05 23.4 0.7 1 23 425 447 425 447 0.98

8 10 6.6e-05 0.0034 17.5 1.1 1 23 453 475 453 475 0.93

9 10 1.3e-05 0.00067 19.7 3.1 1 23 481 503 481 503 0.98

10 10 3.2e-06 0.00016 21.7 0.4 1 23 509 531 509 531 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.083	4.2	7.8	2.0	3	23	175	195	173	195	0.95
2	10	0.41	21	5.6	5.0	1	23	201	224	201	224	0.95
3	10	0.00015	0.0075	16.4	2.2	1	19	230	248	230	252	0.93
4	10	1.2e-07	5.9e-06	26.2	3.4	1	23	258	280	258	280	0.98
5	10	5.6e-06	0.00028	20.9	1.8	1	23	286	308	286	308	0.97
6	10	2.5e-06	0.00013	22.0	3.2	1	23	314	336	314	336	0.99
7	10	8.8e-07	4.5e-05	23.4	0.7	1	23	425	447	425	447	0.98
8	10	6.6e-05	0.0034	17.5	1.1	1	23	453	475	453	475	0.93
9	10	1.3e-05	0.00067	19.7	3.1	1	23	481	503	481	503	0.98
10	10	3.2e-06	0.00016	21.7	0.4	1	23	509	531	509	531	0.97

Sequence Information

Coding Sequence: ATGACGGAGGTAGAGCTGCTTGAACATAACTTTCCGAAAATGTGTCGGCTCTGTTTGCGGCACGAggaatttacaattaatgtccaggaatataataaaatcatacATGATAAAAGCAGGCGACCGCTTGAGGAACGAATTAATGAACTATATCAAATTGAGATTCAGCCATTTGATAATCTGCCCAAGAACATTTGCATAGAGTGCCTGCATTACACTGAAAACTATTGGGAATTTCGGGCTGACGTTACAAAATGTGAAGAGCGGCTGCAAAAGTACTTACTCCAAAGTGGTGCTGCTCATGTCACTTCTATAAAAACTGAGGAACCATTTACAAACGACACAGAGGTTAGCCAGGAGACCCAACCAGACAGTGTTGTTATGGTTGTGGATCCCACCAAAGATTATGACAGTAGCGAAGAAAGTTGTGACAGTGCACAATCCGATGGGGATAACGACACAATACCAATGATTAGTGCGATGAGCAATGAAACTGGCGATTCCTTGAAAAACGTTATATTTTGCCAGTATTGTGATACGGCATTCATCACACACGCTGACTGTCAAAATCATGAGGCAACACACAATCAGGTAACGCCACATTCATGCAACTACTGCACATTTGTGTGTGCCAGTCGCAACACGATTATTGCCCACATCAAAGAGTGTCACGATGCTGAGAAACCATTTGTGTGCGCACGTTGCGGTAAACGATTTGGACGGCGCTCCGATTTAAAGAAGCATTGTGTTGTTCACACTGGCATCCGGCCGTTTCACTGTCCCGTGTGTAATAAGAATTTCTCACGAAATACTAATCTTACAAAGCATCTGCGTATCCATAGTGGGCTGAAGCCACACGTCTGTCAAAAGTGTCCCCGTTCGTTTACCACTAAAGGTGATCTGTATCGCCATGAACAAGTTCATTCCGAAGTGAAACCATATCAGTGTAACCAATGCCCAGCGTCATTTTCGCGTAAAGACAAACTTCAGCATCATGAAAAAACTCACATAAAGCGAGAACAATTattgcagcagcaacaaattCTTCCCGGTGGCACGGCAATGGCAAATGCAGCTGCCCATTTCGATCCGGAGGACATATGCATTGCCTTGGATCCTTTCACCGGCATGGATCACCATGAGCAAAAACATGTACCCGATTCGTTGGATGAGAAAAAAGGCTACCACGTACCAGACCATATTCAAGAAATGGCGTATCGGCCACATGTGACGGGAGACCAACATGTGTCGCCAGTTGAGCGACCCAAAATCTACATGTGTGACGTTTGCCCAAAGCGCTTTGGTACTTCGTCATCGTTGCAGAATCATCGCAATATGCACTTGGGTATACGACGGCACGTTTGTAACGTATGCAATCGAGCGTTCTCCAGAAAACGCGAACTAGATCGTCACAGTGTCATTCACACCGGTTTGAAGCCGTTCGAATGTATGGTATGCCACAAGAGATTTGGCCGCAAGGATAAGTTGACACGCCATGAGCGTATTCATGTGGAGGACGGTATGTTTGCCTGTAACGAATGCCACGCAACTTTTGCAAggcaagaaaatttaattctgcATATGGGAACTCATCTTAATCCTGAGTTGGAGATAATACCGCTTGATAAGGatgacaacaaaatattgtcaaataTTGATGGCGGAAATGCTATGATGGAGTTTAGTTGA
Protein Sequence: MTEVELLEHNFPKMCRLCLRHEEFTINVQEYNKIIHDKSRRPLEERINELYQIEIQPFDNLPKNICIECLHYTENYWEFRADVTKCEERLQKYLLQSGAAHVTSIKTEEPFTNDTEVSQETQPDSVVMVVDPTKDYDSSEESCDSAQSDGDNDTIPMISAMSNETGDSLKNVIFCQYCDTAFITHADCQNHEATHNQVTPHSCNYCTFVCASRNTIIAHIKECHDAEKPFVCARCGKRFGRRSDLKKHCVVHTGIRPFHCPVCNKNFSRNTNLTKHLRIHSGLKPHVCQKCPRSFTTKGDLYRHEQVHSEVKPYQCNQCPASFSRKDKLQHHEKTHIKREQLLQQQQILPGGTAMANAAAHFDPEDICIALDPFTGMDHHEQKHVPDSLDEKKGYHVPDHIQEMAYRPHVTGDQHVSPVERPKIYMCDVCPKRFGTSSSLQNHRNMHLGIRRHVCNVCNRAFSRKRELDRHSVIHTGLKPFECMVCHKRFGRKDKLTRHERIHVEDGMFACNECHATFARQENLILHMGTHLNPELEIIPLDKDDNKILSNIDGGNAMMEFS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -