Basic Information

Insect: Sylvicola cinctus
Gene Symbol: L
Assembly: GCA_963854165.1
Location: OY974082.1:5717674-5731745[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 7.2e-05 0.0037 17.4 3.5 1 23 110 132 110 132 0.97

2 18 0.48 24 5.4 5.8 1 23 138 160 138 160 0.98

3 18 2.5e-07 1.3e-05 25.2 3.1 1 23 166 188 166 188 0.99

4 18 2.1e-05 0.001 19.1 0.2 1 23 194 216 194 216 0.98

5 18 2.8 1.4e+02 3.0 0.6 3 23 272 294 271 294 0.84

6 18 0.0063 0.32 11.3 2.2 2 23 313 335 312 335 0.96

7 18 0.0099 0.5 10.7 0.6 1 23 473 495 473 495 0.98

8 18 2.3e-05 0.0012 19.0 1.2 1 23 503 525 503 525 0.96

9 18 0.00023 0.012 15.8 2.1 1 23 533 557 533 557 0.92

10 18 0.0007 0.036 14.3 0.3 1 23 562 585 562 585 0.93

11 18 0.019 0.98 9.8 1.6 1 23 592 615 592 615 0.98

12 18 0.0039 0.2 12.0 1.8 1 23 647 669 647 670 0.96

13 18 0.00061 0.031 14.5 0.8 2 23 848 870 847 870 0.95

14 18 0.0065 0.33 11.3 0.2 1 23 876 898 876 898 0.97

15 18 0.18 8.9 6.8 0.2 2 23 906 927 905 927 0.94

16 18 0.0064 0.32 11.3 0.6 2 23 1010 1031 1009 1031 0.95

17 18 0.084 4.2 7.8 0.0 1 20 1041 1060 1041 1063 0.95

18 18 0.096 4.9 7.6 3.7 1 23 1070 1092 1070 1092 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	7.2e-05	0.0037	17.4	3.5	1	23	110	132	110	132	0.97
2	18	0.48	24	5.4	5.8	1	23	138	160	138	160	0.98
3	18	2.5e-07	1.3e-05	25.2	3.1	1	23	166	188	166	188	0.99
4	18	2.1e-05	0.001	19.1	0.2	1	23	194	216	194	216	0.98
5	18	2.8	1.4e+02	3.0	0.6	3	23	272	294	271	294	0.84
6	18	0.0063	0.32	11.3	2.2	2	23	313	335	312	335	0.96
7	18	0.0099	0.5	10.7	0.6	1	23	473	495	473	495	0.98
8	18	2.3e-05	0.0012	19.0	1.2	1	23	503	525	503	525	0.96
9	18	0.00023	0.012	15.8	2.1	1	23	533	557	533	557	0.92
10	18	0.0007	0.036	14.3	0.3	1	23	562	585	562	585	0.93
11	18	0.019	0.98	9.8	1.6	1	23	592	615	592	615	0.98
12	18	0.0039	0.2	12.0	1.8	1	23	647	669	647	670	0.96
13	18	0.00061	0.031	14.5	0.8	2	23	848	870	847	870	0.95
14	18	0.0065	0.33	11.3	0.2	1	23	876	898	876	898	0.97
15	18	0.18	8.9	6.8	0.2	2	23	906	927	905	927	0.94
16	18	0.0064	0.32	11.3	0.6	2	23	1010	1031	1009	1031	0.95
17	18	0.084	4.2	7.8	0.0	1	20	1041	1060	1041	1063	0.95
18	18	0.096	4.9	7.6	3.7	1	23	1070	1092	1070	1092	0.94

Sequence Information

Coding Sequence: ATGCCTCTAAAAATGATGTATCGTGGACCAAGCTCACGTCTTGAGACGCTTATTGAGAAAATACAACAAACCAAGGAAATTACACAGGGTGACCATCTTTTggACTTATATTCAACACACACATCCTCGACGTACTCCCCATCACTATCGGAAGGTGCGGCCACACCTAACTCGGTGGGTGGCATCAATGCTGAGAGTACACAATTAAACGACGACGACATTGATGAGAATGGTGGCATTTCCAAGAAGTTGAAAAAGGAGTGCGGGGAGCATAAGAATGGGGGTGTGCACGTTGGGGGTGGCATACGTAATGGGGGTGATGGATCCTATCATTGTCAGTTTTGTGACAAATCATTTCCGCGGCTTGGTTACTTGAAGAAGCATGAACAGAGTCACGCCGAGCAAATGCCATTCAAATGTGATTACTGTGCACGTCTGTTCAAGCACAAGAGGTCAAGGGATCGACACACAAAACTGCACACCGGAGATAGGAGATATCGATGCCCCCACTGTGAGGCGGCGTTTTCAAGAAGcgatcatttaaaaatccacATGAAAACCCACGACAACCAGAAACCGTTTCAATGCACCGTTTGCAATCGGGGCTACAACACAGCTGCTGCTCTCACCTCCCACATGCAAAATCACAAGAAAAAGGCGGGCATTTTGGGAAGTGGTGGTGTGGGAAACCTTGTGGGTCATGGGCCAATTATGAATTACAgCCCAAGATCATCAAGTTCAAGCTCCAGCATAAGCAGtctgcaaaaaagaaaatatacacCTATTGAGGCTAACGGATTGATGCACCCAACCTGCATGTATTGCACCAAATCTGACTTCCAGTCAATGGACCAACTTCAATCACACATTCAAGTTATGCATGGGGCGGTTCTTCATGAgAATTTTTCCCGTCTGTCACTACCATCTATTCCTTTGTCCTGTGAATTTTGCACAATGAAATTCCCATCAATGCAATCGCTGTTCCATCATCTTCGCACAATTCACATTGATCGAATGAACAACGCCAATTCCTACgtgaattatttcaataagtTTGCTTCCTACTACTCATCAAGTCCCCTCCCAGGATTAAGCCAAGACTCAATGTATGACAAGCGAAAACGGATGAGTGAGGAATTAAGCCCAAATCACCACCACAACCCACCCCCAAATATTGATGTAAAGCCATTGCAAGAGGACACCAAAAAGTCATCGCCCCTCCCTGCCGCACCCAAAGCCGTAAAACTGGAAGAACAAGACAGTCCAACTGATTTGACCACTAAAAAGGATGACAGTGAGTCACCCAAAATAGCATCACCACCCATCCAATCACCTACTGCAATTACAGCAGCTGTACCGCAACAATCAACGCCCCAAcaccaacagcaacaacaacagccaaCTGCACCCGGAAGCTTCATGTGCAATCAATGCAATGCGGCACTCTCCGACTTTGACTCATTTCGATTGCATCTTAAGAGTCATCTGTCACAGGAGATGGAAAGCTTTGTGTGTCAGTACTGCGGCACCGCATTCACCAATCAACACGATTTCGAAAGCCACGTTCTCTTGCACTTCCTCATCACCAATTCCGAGCACATTTGTCCGCACAATTGCAACAAATCCTTTGCCAAATCGGAAGATCTGCAAAAGCATCTACTAgacatgcacacacaaacattgtaCAAATGTGAAATATGTCACGAAATGTTTGACACTAAAGTTGCAATGCAAGTGCATTTCGCTGTTGCGCATGCCAATGAGGTGAAAACGTACAGGTGCTCCGCGTGCATGGAGATCTTTCGCAATGAGAAAGATTTCAAGTATCACATTAGAACGCGACACGCCATACCCGGCACCATACAGTGTCTCTTCTGTCGAACGGTGTGCGCCTCCGAGTTGGAGATGCACTTCCATTTGGCGGCACACGCCAAGCAGTACAAATGCCCCGCATGCCCCGAATCATTTCATGTGGAATTTTTGTTGGATCGTCACATGCAAAATCACCATACGCAAAAAGACAATCAGCATCACTATTTGTCACCAAAGTCAACCAACAATAACAACTCCACGTTTGACTATCATCACATGGCCAACAACAAGAACTACTTTGGATTCAACAAGCCACCCACATTCAATCCATTGAAAATGAATGGCCCACCCAATTATGAAGCCTCACTGAAGCCGCAGCATCCACATCATTTGCCAGTGTTCCGGGAGGAGCAGGCACCCAAACCGAACAACATGCTTCAAGGAATTTACAGCACTGAGTTGGCATTGCAGGCGGCTAAGTCGGGTTATTTTGATCAAACAAATCccgcagcaacaacagcaccCCCAGTATTTGATGTGACACCAAAAAGTGtgctgcagcagcaacaacaacctGAATTAAATGCGTCACCATCGGAAAAGACACGTCccattaatgaaatgaagcgTTTTGGTTGCGGCATTTGTGAGAAACAAGACTTTACCTCAGAGGCGGATGTCAATACGCACAAGaaaattgtgcacaatttCAAAACCGGCGTCAGCCTACGATGTGCGTATTGCAATTCCAACTTCCGATCACGCAATGAGCTGGAGAACCACATGAAGGCGTCCCACAATTTGAGTGGCAAACACAAATGCCTGATTTGTGATGAGATTTTCCCGTCCCAAACAGTGTTAGCTGAACACAAGTTGGTACACTCAAAGGTGGGGGCATCGGGAAAGTGTTCCCACTGTTCTGTGCAACTTCCGGATAACGCCAGCTTTAAGGCGCACATTGGGGAGCACAATGGAAGCGACTTTCCAGTGCAATGCATTTGTTGTCGTCAGACATTGCATTCAGATTATGAAATTGGATTGCATGCAAAATTCCACACCAAATTGGACTACACCAGTGAAAATGCGTGCGCCATGTGCCTCGATGCATTGCCACCAAATGTTGAACGCAAACTTTGCGAGAAGTGCCTCAAGAAGACGGCATTCTCAGCACTGAGTCAATCCGCTGGCCTGGATCAACGCAATGTCACATCATTGCAGTGTAATTTGTGCACAAAAACATGCCCAACAGCGGCACGACTGCAGGAGCATTTAATTGAGCACTCGTTTCAAGGTTGTGAAGAGCGCGGCTACATTTGTTATGTGTGTTCCGCCGTCTTTACAGCACCGGCTGCCTTGTTGGCGCACATGCCCGAGCATGGTGCTGCCCTCAAGCCATATGACTGCCACTTGTGCAGTTTAAAGTTTTACTTTCGCAGTGAGTTGGATCATCATCTGGTGGAGCATGAGACTGGGGCTGCCCGTTCTGGAGTTCATCATGAAGGGGTGCGCCCTATTGCGAGTCCCAATTGTAATAACAATGTGCAGGTGGCTGGTGAAAAGATTGTGGCGGATATTACTGAGGAGGTGGTGGTTAAGAGTGAGGTCAATGATGACGATCTGGATGATGAGTACATTGAGGTGGAGAAACTTTCGGAATTGAATCAGGCGGATAGCATCAAAGATGAGGATCATTCCAAATAG
Protein Sequence: MPLKMMYRGPSSRLETLIEKIQQTKEITQGDHLLDLYSTHTSSTYSPSLSEGAATPNSVGGINAESTQLNDDDIDENGGISKKLKKECGEHKNGGVHVGGGIRNGGDGSYHCQFCDKSFPRLGYLKKHEQSHAEQMPFKCDYCARLFKHKRSRDRHTKLHTGDRRYRCPHCEAAFSRSDHLKIHMKTHDNQKPFQCTVCNRGYNTAAALTSHMQNHKKKAGILGSGGVGNLVGHGPIMNYSPRSSSSSSSISSLQKRKYTPIEANGLMHPTCMYCTKSDFQSMDQLQSHIQVMHGAVLHENFSRLSLPSIPLSCEFCTMKFPSMQSLFHHLRTIHIDRMNNANSYVNYFNKFASYYSSSPLPGLSQDSMYDKRKRMSEELSPNHHHNPPPNIDVKPLQEDTKKSSPLPAAPKAVKLEEQDSPTDLTTKKDDSESPKIASPPIQSPTAITAAVPQQSTPQHQQQQQQPTAPGSFMCNQCNAALSDFDSFRLHLKSHLSQEMESFVCQYCGTAFTNQHDFESHVLLHFLITNSEHICPHNCNKSFAKSEDLQKHLLDMHTQTLYKCEICHEMFDTKVAMQVHFAVAHANEVKTYRCSACMEIFRNEKDFKYHIRTRHAIPGTIQCLFCRTVCASELEMHFHLAAHAKQYKCPACPESFHVEFLLDRHMQNHHTQKDNQHHYLSPKSTNNNNSTFDYHHMANNKNYFGFNKPPTFNPLKMNGPPNYEASLKPQHPHHLPVFREEQAPKPNNMLQGIYSTELALQAAKSGYFDQTNPAATTAPPVFDVTPKSVLQQQQQPELNASPSEKTRPINEMKRFGCGICEKQDFTSEADVNTHKKIVHNFKTGVSLRCAYCNSNFRSRNELENHMKASHNLSGKHKCLICDEIFPSQTVLAEHKLVHSKVGASGKCSHCSVQLPDNASFKAHIGEHNGSDFPVQCICCRQTLHSDYEIGLHAKFHTKLDYTSENACAMCLDALPPNVERKLCEKCLKKTAFSALSQSAGLDQRNVTSLQCNLCTKTCPTAARLQEHLIEHSFQGCEERGYICYVCSAVFTAPAALLAHMPEHGAALKPYDCHLCSLKFYFRSELDHHLVEHETGAARSGVHHEGVRPIASPNCNNNVQVAGEKIVADITEEVVVKSEVNDDDLDDEYIEVEKLSELNQADSIKDEDHSK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -