Basic Information

Insect: Sylvicola cinctus
Gene Symbol: -
Assembly: GCA_963854165.1
Location: OY974083.1:59571157-59574727[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 3.6e-05 0.0018 18.4 1.1 1 23 180 202 180 202 0.95

2 15 0.00069 0.035 14.3 3.9 2 23 209 230 208 230 0.95

3 15 0.0023 0.12 12.7 0.1 1 23 320 342 320 342 0.97

4 15 0.0099 0.5 10.7 0.3 2 23 349 370 348 370 0.97

5 15 0.0048 0.24 11.7 0.1 2 23 409 431 408 431 0.96

6 15 0.01 0.51 10.7 1.6 1 23 442 464 442 464 0.94

7 15 0.022 1.1 9.6 0.0 1 23 470 493 470 493 0.94

8 15 0.083 4.2 7.8 2.5 2 19 501 518 501 519 0.96

9 15 2.2e-05 0.0011 19.1 5.8 1 23 528 550 528 550 0.97

10 15 0.0089 0.45 10.8 1.0 3 23 557 577 555 577 0.96

11 15 4.8e-06 0.00025 21.1 0.5 1 23 585 607 585 607 0.98

12 15 0.00086 0.044 14.0 0.2 1 23 613 635 613 635 0.97

13 15 2e-05 0.00099 19.2 0.2 1 23 641 663 641 664 0.95

14 15 5 2.5e+02 2.2 0.2 1 13 678 690 678 695 0.85

15 15 0.97 49 4.4 0.0 2 20 1106 1124 1105 1127 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	3.6e-05	0.0018	18.4	1.1	1	23	180	202	180	202	0.95
2	15	0.00069	0.035	14.3	3.9	2	23	209	230	208	230	0.95
3	15	0.0023	0.12	12.7	0.1	1	23	320	342	320	342	0.97
4	15	0.0099	0.5	10.7	0.3	2	23	349	370	348	370	0.97
5	15	0.0048	0.24	11.7	0.1	2	23	409	431	408	431	0.96
6	15	0.01	0.51	10.7	1.6	1	23	442	464	442	464	0.94
7	15	0.022	1.1	9.6	0.0	1	23	470	493	470	493	0.94
8	15	0.083	4.2	7.8	2.5	2	19	501	518	501	519	0.96
9	15	2.2e-05	0.0011	19.1	5.8	1	23	528	550	528	550	0.97
10	15	0.0089	0.45	10.8	1.0	3	23	557	577	555	577	0.96
11	15	4.8e-06	0.00025	21.1	0.5	1	23	585	607	585	607	0.98
12	15	0.00086	0.044	14.0	0.2	1	23	613	635	613	635	0.97
13	15	2e-05	0.00099	19.2	0.2	1	23	641	663	641	664	0.95
14	15	5	2.5e+02	2.2	0.2	1	13	678	690	678	695	0.85
15	15	0.97	49	4.4	0.0	2	20	1106	1124	1105	1127	0.92

Sequence Information

Coding Sequence: ATGGAAGAAGAGTATGAAATATGGCATCAAGGCGAAAACGACGATGACGACGACCAAACCATTGATCACGGTCAGGTCGTCATCGAGGAAATCGTTATGCAAAAGGGTCACGACCATTTGGACGACCTCATCGAGGAAGTGGATGAAGACGATGAGCAAATGAACGAAGAGTACTTGGTGGGTGAGGAGATAATCCCCTCGTCTGAGATCGGTCAAATCACTAACAGCTTAGACCAATTGGCAGCCGAAAATCTTATTTACATGGCACACGATGGCAACGCCATGGGCATGGGCGATTTAATTGAGAAAGAAGTGGAACAAACAGAGACGGCCAACTATAATGAGCCCCAATACTTTGATTGTCAAGTCACTGAGGAAGTGATCACCGATGATTGGGTGACCGCACAAAACGTTGAACGCATTGAGATGTCTAATGACCAGTTGACCACTGGCACTGTAGTGGTGGATGGCACCATTGCAGGCGACATGGATGTGCCATTGCCTACGGATCAAGACGAGTATACCAGCAGTCGTCCGTATCCGTGTGACTTTTGTAGTCGTCGTTTTCGCAAGAAGACTAATCTCGAGAATCACATGGTGGCACATCGCACTGATCGTCAGTGTGTGTGTCATTTGTGTGGCAGGCGATATGCAAGACGCAATGAATTGATTAATCATTTGAAATTCCACGCTCAAATGCCTGCAGATGAAGAGGACGTTATGAATGAGTCCATGAATATGGACATTTATCATGTTATTTCCAACACAACGTCACCTTCGCGTGGCAGGAATCGCATTAAGGTGGAGAGAGAGCCGAGGCAAAGGACAGTGAGTAATAATGTGTCGGTGCATAATGAACAGGATGATATGCAGGTTTTGCTGGAGGCAGCGCAGCAACACGATGAATTGCATCGATTTAAAACTGAGGCGTATCCTCAAAAGGATCCAAAGAAGCCGTTCGTTTGTCAATCATGTGGAATCGGGTTTGCCAGGGAGAAAGCACTGATTTCGCATTCAAAGATTCATGGTTCAGACACTCCACTTGAATGTGAGTCCTGCAATGAAATGTTCTGGGATCGCAACGCACTGCGAGAGCACCAAAAAACGCATGATCTAATGCCGGATGATGCTTCCAGTAATTCAGAGTATGAGCCTGAAAAGGATACTTCTAGGCCGGACGACTCCGAGTCCGACACAAATGCAGGACGAGCATTTTCTGAGGTATATTGCGATATTTGTGGTTCTGGTTTTCTAAAAGCTCCTCAGTTGAGGAAGCACATGCGAAGCGCACATCCTCCACGCTTTACCACATCAGCGGAGGGTCACTGTTGCACAGTGTGTGGTCACACTTTTACTGAGGCGCTCGATTTGTTGGCCCATGCTGAAATTCATGCACGCAATCAGCGATACACTTGCAATCTATGCGGTGAAATTTTCGGAGAAGAGAATGAAATCAAGGCTCATCTCCAAGCGAAACATGCCGCCGAGATGACAGACAACACATGTCTGCTGTGCGGCAAACACTGTCGTGACTCAAGAATGCTCATGAAACACTCGTGGGACCATTCGCGTGAGAAAAATCATCCATGCTCCAAGTGTGGCAAGACCTTTCACAATAAGGCACGCCTTAAGCGACACATGCAGTCGCATCGCAATAAGTCGGTGCATTGTGATGTCTGCGGTGAAGAATTCCCGGATGGACGCTCCCTAATGAATCATCGGCACTCTCACAACAATGTGTCGGGCAGGCAGTTTCCCTGTCGTGAATGCGGCAAGACGTTTGGCTCGCGAAGTTCGCAACAAATTCACATGCGAATTCATACCGGAGAGCGCCCTTATGCATGTCGCTTTTGTTGGAAGGCGTTCGCTGATGGAGGCACATTGCGAAAGCACGAACGGATCCATACAGGAGAGAAACCTTATGCGTGTCCTGTGTGTCCTAGGGCATTTAATCAGAGGGTCGTACTAAGGGAGCACATTCGTTCACATCACTCGGGGCCGGACCAAAAGTATGGTAGTAGTGCAGCGCCATATCATTGCACGGTGTGTTTGCAGAATTTCAGTAGTTCCTTGTTCTTGATACAGGATTTGATTCAGCACAGTGACAATAATACTGCAGAACAGCGACAACCTCCaGCCGGGCCACGTAAATACAAGCGGCGCCGTCAGCTGAAGCCTCACGAGATCGAACGCTTGAAACCCGACAAACAAGAGAGCGATTTTTCAGAAAATGAATATGAAGAGGAACGTCAAACATCCTACAAAATTGTGGAAGTGCCAACACCTCCGCCGGCACCATTGCCACCACCAAAGCGAAAATACAATCGCGAGTCAGCCACATCAAAGCGCAGACCATCTGAGACCAAAACCACTCCAACAGCAAGAATTACTACCACCGCAGCAACCACCAGCTCCACATCCAATAAGCGTTCCCTTGCCGTTCCCAATCAGATCATCAGCGAAAATTACAACGCTGTCATAGACAACGTCGAAAACACTTTGCAGTCCATAGACTCTTTAGTTGTGCCAACAACCACGCATGCAGCGGTGAATCAAGCACCAGCCCAGCTGGCATCACCACCTGCACCACCAGCAAACATAACACAGCAGCGTGCAACACGAGCAACAGCGGCCACACGGAAGAGCAAGAAAAATGACGCCGCCGCACGTCCCAAAATGATACACACTGAGAAGAGGCGCGTCGCCACTGACGAGGGAAGTAAACGACGCACAAAAACATTGATCACCCGCACCGATGTGGGACGCGAAAAAAAGGCGACCCGAACTACGACGCGAAGGTCACGCGCCGCTGCAGCCGCAACGGCAACGACAACCGCTGCCGCCACTTCCTCAGCCACAGCAATTAACAATGCCagcagtggtggtggtggtatgTTAATGGACGATAATATCCTTGAAGAATTGTCTAACAACAAACTAATGAACTACAGTCCCGATTTAGTCAATGATTTGGAACAAATTTTGCGATCCCCTATTAAAAAGCCTAGATCCCAATTGGCGGCTACGCCGTCACCATTGGTGTCGCACGTCAAAATCAAGACGGAGCCCATTGAAAAAATGAAGCCACCGCCTCCTCAAATACATCCAAGGCAGCAGCGTTACAGTCGTCGCTACAATGCTGTCGTTTCACCAAAAACGACCGTTGCTTCAACGTTCAAAAATTATGACAGCAATAGTGATGAGCAAGGGGAGGAGTCTGACGGTCAATCGATAAACTTAAAGTCGGTCATTAAGGTGGAGCGAGAGATGTGCTCGGATGATCCAATTGACACCATAAATTCGAAGGAGTTTATTCAGTGTGCTTTGTGTGCAGCGATTTTCTCGGATCGTACGCAGTTGTTGTTGCATGTCCCCATTCATATTTAG
Protein Sequence: MEEEYEIWHQGENDDDDDQTIDHGQVVIEEIVMQKGHDHLDDLIEEVDEDDEQMNEEYLVGEEIIPSSEIGQITNSLDQLAAENLIYMAHDGNAMGMGDLIEKEVEQTETANYNEPQYFDCQVTEEVITDDWVTAQNVERIEMSNDQLTTGTVVVDGTIAGDMDVPLPTDQDEYTSSRPYPCDFCSRRFRKKTNLENHMVAHRTDRQCVCHLCGRRYARRNELINHLKFHAQMPADEEDVMNESMNMDIYHVISNTTSPSRGRNRIKVEREPRQRTVSNNVSVHNEQDDMQVLLEAAQQHDELHRFKTEAYPQKDPKKPFVCQSCGIGFAREKALISHSKIHGSDTPLECESCNEMFWDRNALREHQKTHDLMPDDASSNSEYEPEKDTSRPDDSESDTNAGRAFSEVYCDICGSGFLKAPQLRKHMRSAHPPRFTTSAEGHCCTVCGHTFTEALDLLAHAEIHARNQRYTCNLCGEIFGEENEIKAHLQAKHAAEMTDNTCLLCGKHCRDSRMLMKHSWDHSREKNHPCSKCGKTFHNKARLKRHMQSHRNKSVHCDVCGEEFPDGRSLMNHRHSHNNVSGRQFPCRECGKTFGSRSSQQIHMRIHTGERPYACRFCWKAFADGGTLRKHERIHTGEKPYACPVCPRAFNQRVVLREHIRSHHSGPDQKYGSSAAPYHCTVCLQNFSSSLFLIQDLIQHSDNNTAEQRQPPAGPRKYKRRRQLKPHEIERLKPDKQESDFSENEYEEERQTSYKIVEVPTPPPAPLPPPKRKYNRESATSKRRPSETKTTPTARITTTAATTSSTSNKRSLAVPNQIISENYNAVIDNVENTLQSIDSLVVPTTTHAAVNQAPAQLASPPAPPANITQQRATRATAATRKSKKNDAAARPKMIHTEKRRVATDEGSKRRTKTLITRTDVGREKKATRTTTRRSRAAAAATATTTAAATSSATAINNASSGGGGMLMDDNILEELSNNKLMNYSPDLVNDLEQILRSPIKKPRSQLAATPSPLVSHVKIKTEPIEKMKPPPPQIHPRQQRYSRRYNAVVSPKTTVASTFKNYDSNSDEQGEESDGQSINLKSVIKVEREMCSDDPIDTINSKEFIQCALCAAIFSDRTQLLLHVPIHI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -