Scin009199.1
Basic Information
- Insect
- Sylvicola cinctus
- Gene Symbol
- -
- Assembly
- GCA_963854165.1
- Location
- OY974083.1:52269192-52271962[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00046 0.023 14.9 1.0 1 23 115 137 115 137 0.98 2 13 1.5 75 3.9 0.4 3 23 144 165 142 165 0.93 3 13 0.02 1 9.7 2.3 1 23 306 328 306 328 0.97 4 13 0.0014 0.069 13.4 1.5 2 23 445 467 445 467 0.91 5 13 1.2e-05 0.00063 19.8 0.7 1 23 476 499 476 499 0.96 6 13 3.9e-05 0.002 18.3 2.7 1 23 507 529 507 529 0.97 7 13 0.0012 0.06 13.6 1.6 3 23 550 570 548 570 0.97 8 13 3.9e-05 0.002 18.2 1.9 1 23 575 597 575 597 0.98 9 13 3.8e-06 0.00019 21.4 1.1 1 23 603 625 603 625 0.96 10 13 1.4e-05 0.0007 19.7 1.7 1 23 631 653 631 653 0.98 11 13 7.2e-05 0.0037 17.4 3.3 2 23 660 681 660 681 0.98 12 13 1.4e-05 0.0007 19.7 3.7 1 23 687 710 687 710 0.97 13 13 4.9e-05 0.0025 17.9 1.3 1 23 715 738 715 738 0.97
Sequence Information
- Coding Sequence
- ATGGCGAGTGCCGCAGATTTGGTTCATTTATGTTTAACATGCTTAAAAGAGGACAATGGAGAAAACATGGATTCAGTTTTTTCGGAGGTGACATTTGTCGACGGAAATATTGCTTCATGCTCATTTTTACAACTTATTGACGAGTGTACACAAGTTAAggtCGATCCTAATGataaaaagccaaaaaaaatatgcatcGAATGCATCGATGCGGTTACAAAGGCGTACATGTTTCGTGTGCAAACGCAACAATCCAATAAATGGATTCTGTCGACACTGGGGGAGGATGAACAGCGACCAAGCGGTCATGTAGCCGCAACACAAACGGAAAATGTTACTATTTATCCATGTGAGATGTGTAGTAAATTGTATTACACCGAAAAGGAGTTGCGGaaaCATCGGAATGTTCATCGCTGGAAACCCCTGATATGTAGATTTTGTAACCAGGAATTTTTAAAGCTAGTCAACTTGCAAGGAcatcttttgaaatatcatcCTGCGTCCCAAATAAGATCATCGGGgaataattcaaataatttctatGATACGATTAATGCAGCTGCTGACTtttgtgatgatgatgatgacagTATTTCGGCAAGCGATGAAGATAATTTGTTTAGTGATGAAGATGACCAGTCACCAGAAATTTTGGAAAACATTAAAGAAGAACTAATCGAAAGTGATGTACCAAATGTTATGTTAAAAGTGGTTCCTATATATCAGACCACTGTCGAATACAATGGAAAAGAAGAAATAACATATGAAGAAATGATTGAAGAGAACGACAATGAGCAAACAGTTCTAGACGAACAAGATGAACAAAGCATTTCCTACAAGTGTGAGTCGTGTACAGTTGCGTATTCTAATTTTAGTGGAACAACTAAGGAGATTATTCACCATGGATTTGACGGTCATAAATGCCCGTATTGCAAACGTATCATAATGCGTTATGATAACTTCGATAAACATGTTAGCATGCATTATAAAGAGAAAAGGTATAACCCAAGGGGACGTGTCATATTACAGTCTCCAAGAGTGTTGGATGCAGAAATAAAGGTCTCGCCCCTTCCAGTCGAAAGGAAGAAAGTGGGTCGTCCAAAAAAAGTTTCCCTTATAAGGATTGAACCAGCTTCCACAGTTGAAGAGGTTACGGAAATTAATGTTCCTGCTGATGAGTTTTATGAACATATTGAAAacgatttcaataaaataatcactGATCCAGGTGACGAAGATGGAGACgaagaatttttattgaatgacaGCTCAAATGATGAAACAGTGGAAGAGATCGAAGATACCGACACAAACGATAAAAGCTCATTGGCACGGTGTCCtcattgtgaaaaatattatgccTCACGCAGAAGCTTGCAATCTCACATCTATGATCAGCATATGCGAGCGAAACCGGCTGATCCTTTTGTCTGTGAGGTATGCAATAAAACGTACGCATCCGAAAAAAGCTTGCGTTCTCATCAACGTGAACAACACGACATGCACCAAATGGATAACCATCCGTGTCCCCATTGCGACAAAGTTATTCAACGATTGGATAACTTCAAGCGTCACTTAATGACACACGCTGAACCGAAATCTGTGCCGAAAGACGAGAAATCTCCAGGGCGCAAatctaaaacattttgtacaatCTGTCAAAAATCGTTCCTCAGCGCGTACTACTACAAGGACCACATGAAAAGTCACGAGGAGCCAGCGTATGTGTGCGAACAGTGTGGTGAACGATTCCATTCCAAGGTTAAACTTAATTCACACACTCGAATTCATCGCGGCCCTAAGGAGTACCTGTGTCCGGAGTGCGGGAAATGCTTCAGCAAAGGTGAATATCTGAAAGTGCACATAATGCGGCACAACGGTATTAAACCGTTCACGTGTAACTATTGTGACAAGAATTTTGTCTCAAAGAGTGAAGTGCGCCTTCATGAACGATACCACACAAATCAACGCATACGCGAATGTGAAATATGCAAGAAACAATTCCATCGAATGACCAGCCTCACCATACACATGCGTACGCATACAGGTGAGCGTCCGTACGCCTGTACGCACTGTGACAAACGATTCACGCAGCGTAACGACATGAAGACTCACGTTCGGCGGGAGCACACCGGTGAGAAGTTCTCATGTGAATTGTGTGAGGCTGCATTTGTTCAGCAATACCATTTAACACAGCATTTGCGGCAGACCCATAACATGGATGTGAAGTCACACATTGGAAGGGTGAGGAAAGTATCGGTGCCTATAAAGAGATTGCCCAATCCTCCCGGTAGGAAGAAAGAGTCAAAAGTATGTGCTGTAGTGAAAACGGAAAATGAAGACGACATGAAAGTAATGGTTCCGTTTAATTGCCTTGACATGGATACCATGGAAATGACCAGCAAAACTGTTGAGATTGGAATTAAACCATTGTTGTAG
- Protein Sequence
- MASAADLVHLCLTCLKEDNGENMDSVFSEVTFVDGNIASCSFLQLIDECTQVKVDPNDKKPKKICIECIDAVTKAYMFRVQTQQSNKWILSTLGEDEQRPSGHVAATQTENVTIYPCEMCSKLYYTEKELRKHRNVHRWKPLICRFCNQEFLKLVNLQGHLLKYHPASQIRSSGNNSNNFYDTINAAADFCDDDDDSISASDEDNLFSDEDDQSPEILENIKEELIESDVPNVMLKVVPIYQTTVEYNGKEEITYEEMIEENDNEQTVLDEQDEQSISYKCESCTVAYSNFSGTTKEIIHHGFDGHKCPYCKRIIMRYDNFDKHVSMHYKEKRYNPRGRVILQSPRVLDAEIKVSPLPVERKKVGRPKKVSLIRIEPASTVEEVTEINVPADEFYEHIENDFNKIITDPGDEDGDEEFLLNDSSNDETVEEIEDTDTNDKSSLARCPHCEKYYASRRSLQSHIYDQHMRAKPADPFVCEVCNKTYASEKSLRSHQREQHDMHQMDNHPCPHCDKVIQRLDNFKRHLMTHAEPKSVPKDEKSPGRKSKTFCTICQKSFLSAYYYKDHMKSHEEPAYVCEQCGERFHSKVKLNSHTRIHRGPKEYLCPECGKCFSKGEYLKVHIMRHNGIKPFTCNYCDKNFVSKSEVRLHERYHTNQRIRECEICKKQFHRMTSLTIHMRTHTGERPYACTHCDKRFTQRNDMKTHVRREHTGEKFSCELCEAAFVQQYHLTQHLRQTHNMDVKSHIGRVRKVSVPIKRLPNPPGRKKESKVCAVVKTENEDDMKVMVPFNCLDMDTMEMTSKTVEIGIKPLL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -