Scin008331.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Sylvicola cinctus
Gene Symbol
-
Assembly
GCA_963854165.1
Location
OY974083.1:41739947-41750297[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 10 4.7e-05 0.0024 18.0 0.2 3 23 99 119 98 119 0.97
2 10 1.7e-06 8.5e-05 22.6 1.2 1 23 125 147 125 147 0.99
3 10 1.6e-05 0.00082 19.5 2.8 1 23 153 175 153 175 0.98
4 10 2.9e-05 0.0014 18.7 2.2 1 23 185 207 185 207 0.99
5 10 2.7e-06 0.00014 21.9 1.4 1 23 213 235 213 235 0.98
6 10 1.7e-06 8.9e-05 22.5 0.2 1 23 245 267 245 267 0.99
7 10 1.3e-05 0.00068 19.7 1.1 1 23 273 295 273 295 0.97
8 10 0.00032 0.016 15.4 0.3 1 20 301 320 301 323 0.93
9 10 7.5e-06 0.00038 20.5 1.1 2 23 330 351 329 351 0.97
10 10 1.6e-06 8e-05 22.6 1.4 1 23 357 380 357 380 0.97

Sequence Information

Coding Sequence
ATGTTTGAGCAACAAATCAAAGCAGAACCTATGGGTTTTTATACAACCGCTAGCGGTGCAACACATCAAATATTACAGGCTGGATTGCCGCCACCACCGGCACCACAGAGACAGGATAGCGGAGATCAACAGCTTTCGCCTCAACCACCGGGCACACCAGTGTCAAACATATCGGAGGGACCGAAAGTGGAAATCAATCAACAGCAAAATGCGCACAATGCCATCCAAATGGCTACACAGGCTGCCTCCACATCGTCTTCATCGTCATCCAACTCACGCAGTAAGCCGCAGGCGTGCAAAATATGTGGCAAAATGTTGTCGTCAGCCAGTAGCTACTACGTGCATATGAAACTGCACTCTGGTACAAAGCCATTTCAATGCACGGTATGTGAAGCAGCGTTCTGTCGCAAACCTTATTTAGAGGTTCACATGCGAACACACACTGGCGAGCGGCCCTTTCAATGTGATCTCTGCATGAAGCGATTTAGCCAGAAGTCATCACTTAACACACACAAGCGGATACACACAGGTTACTGGACCATGCACAAACCGTTCCAGTGCACCCAGTGCAGTGCCGCGTTCTGCCGGAAGCCCTACCTAGACATCCATATGCGCACACACACGGGCGAGCGTCCATTCGAGTGTGATGTTTGTCTCAAACGATTCACACAGAAATCAACGCTTAACATTCACAAGCGTATTCATACGGTAATTACAGTTCAGGAACGGCCGTACCAGTGCGATCAGTGTCCAGCCGCATTTTCGCGCAAACCCTATCTTGACATCCACATGCGGACACACACTGGGGAGCGTCCATTTGAGTGTGACGTTTGTCTGAAGCGCTTCACACAGAAGTCCTCGCTAAACATCCACAAAACCATACACACTgGTGAACGTCCGTACGCTTGTgacatttgcaataaaacgtTTGCTGTTAAAAGTTATGTGACGGCACATCGATGGTCACACGTTTCAGAGAAGCCACTTAGTTGCGATCGTTGTTCGATGACGTTCACCAGCAAATCTCAATTCGCTGTGCATATTCGAACACACTCGGCCGGTCAAAATTACGAGTGCAACGTATGTGGACGCACTTTCATCCGAGACAGCTATCTGATACGACATCATAATCGTGTGCATCGCGAAAATAGAACAACAGCCAACAGTATTGAGACAATAAATAGTGTGGCAACGGGTGTGTCATCGCCTGGTAATCGTGTCGAGGTGCAATATGATGCGACGGGAGCAGTGAGTGCTGGTTCAACACCGACTCCATCCGGTGCTAGTGCGGCTGCAGCAgctgcagcagcagcggcTAATCCACAAGTCTGCGATTTGAGGGTATCTACAGATTTAAATAGCCAAACACTCCGAGTGAACGGCAACACGCACACAATTTCTTCAAATGGGCTAATACATGATGACCGCATGGCGGCTGCTATCCATCATCCGGCTGTAATGGCGCCACCCTTTGTGCTGCAGACTCACTTCTTGGCCGCTAGCGACGCACGGCTGGGTTCCAAAGCATAA
Protein Sequence
MFEQQIKAEPMGFYTTASGATHQILQAGLPPPPAPQRQDSGDQQLSPQPPGTPVSNISEGPKVEINQQQNAHNAIQMATQAASTSSSSSSNSRSKPQACKICGKMLSSASSYYVHMKLHSGTKPFQCTVCEAAFCRKPYLEVHMRTHTGERPFQCDLCMKRFSQKSSLNTHKRIHTGYWTMHKPFQCTQCSAAFCRKPYLDIHMRTHTGERPFECDVCLKRFTQKSTLNIHKRIHTVITVQERPYQCDQCPAAFSRKPYLDIHMRTHTGERPFECDVCLKRFTQKSSLNIHKTIHTGERPYACDICNKTFAVKSYVTAHRWSHVSEKPLSCDRCSMTFTSKSQFAVHIRTHSAGQNYECNVCGRTFIRDSYLIRHHNRVHRENRTTANSIETINSVATGVSSPGNRVEVQYDATGAVSAGSTPTPSGASAAAAAAAAAANPQVCDLRVSTDLNSQTLRVNGNTHTISSNGLIHDDRMAAAIHHPAVMAPPFVLQTHFLAASDARLGSKA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-