Basic Information

Insect: Sylvicola cinctus
Gene Symbol: -
Assembly: GCA_963854165.1
Location: OY974083.1:54187102-54189134[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 1.2e-05 0.00058 19.9 1.0 1 23 152 175 152 175 0.93

2 16 3.3e-05 0.0017 18.5 1.0 1 23 181 203 181 203 0.98

3 16 7.3e-05 0.0037 17.4 0.6 1 23 209 232 209 232 0.97

4 16 0.0016 0.08 13.2 1.3 3 23 239 259 237 259 0.94

5 16 0.07 3.6 8.0 6.6 1 23 265 288 265 288 0.95

6 16 4.4e-06 0.00022 21.3 2.0 1 23 293 315 293 315 0.98

7 16 0.00058 0.03 14.6 0.3 1 23 321 344 321 344 0.97

8 16 6.7e-05 0.0034 17.5 2.2 1 23 350 372 350 372 0.99

9 16 0.0081 0.41 11.0 1.4 1 23 378 402 378 402 0.95

10 16 0.00021 0.011 16.0 3.1 2 23 408 429 407 429 0.96

11 16 0.0022 0.11 12.8 3.2 1 23 435 458 435 458 0.97

12 16 8.9e-05 0.0045 17.1 0.3 1 23 464 486 464 486 0.95

13 16 0.0034 0.17 12.2 1.5 1 23 532 556 532 556 0.96

14 16 0.019 0.96 9.8 3.4 2 23 562 583 561 583 0.97

15 16 8e-06 0.0004 20.4 2.9 1 23 589 612 589 612 0.98

16 16 0.00016 0.0081 16.3 0.9 1 23 618 640 618 640 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	1.2e-05	0.00058	19.9	1.0	1	23	152	175	152	175	0.93
2	16	3.3e-05	0.0017	18.5	1.0	1	23	181	203	181	203	0.98
3	16	7.3e-05	0.0037	17.4	0.6	1	23	209	232	209	232	0.97
4	16	0.0016	0.08	13.2	1.3	3	23	239	259	237	259	0.94
5	16	0.07	3.6	8.0	6.6	1	23	265	288	265	288	0.95
6	16	4.4e-06	0.00022	21.3	2.0	1	23	293	315	293	315	0.98
7	16	0.00058	0.03	14.6	0.3	1	23	321	344	321	344	0.97
8	16	6.7e-05	0.0034	17.5	2.2	1	23	350	372	350	372	0.99
9	16	0.0081	0.41	11.0	1.4	1	23	378	402	378	402	0.95
10	16	0.00021	0.011	16.0	3.1	2	23	408	429	407	429	0.96
11	16	0.0022	0.11	12.8	3.2	1	23	435	458	435	458	0.97
12	16	8.9e-05	0.0045	17.1	0.3	1	23	464	486	464	486	0.95
13	16	0.0034	0.17	12.2	1.5	1	23	532	556	532	556	0.96
14	16	0.019	0.96	9.8	3.4	2	23	562	583	561	583	0.97
15	16	8e-06	0.0004	20.4	2.9	1	23	589	612	589	612	0.98
16	16	0.00016	0.0081	16.3	0.9	1	23	618	640	618	640	0.96

Sequence Information

Coding Sequence: atggaacTCGATCCACTTGATTTACAGgatAACGTCACCCCATCAGATAAGacaattcaaatcaaaacaGAAATCATCTGTGAGCCTGAAGAATTCATGGAATATACCCAAAATGGACAGTACTTAAAGGTCAAACCCAAAGAGGAGcccattgaaaatgttttcagcGACTATGAATTAAGTGGAAGACTTGTGTCCGACTCAATTGATTGCGTTAATCAATCAACTACAGCTAATGGAACCGACTTTGTAGCGTATCAAGATCTTATACAACCCAAAACTGAAGACAATACAAACATACCCTATACATTTGAAGATCGTCCAATGCCCAGCAATGAATCCGCATTACTTCAAGACAACAACCCAACCTTCAACTACTTCAACACAAACCAAAATGCACTAACTTTTGGAGTATCcctgaataaaataaaaacagaaatttttgaaatggaatttaaatgcaaagatTGCCCTGAAACATTTACGAAAAAATCGCTTCTAAATCTTCACAACAAAGCCATACACCTCGGCATAAAAGTGTACAGCTGTGATCAGTGTTCCAAAACATTTGCGCGCGATCGAAGCCTCATCGcccacaaacaaacacacatcgGCGAAACACCATTCAAATGTGACAATTGTCCGGTGGGATTTACCAAACAAACCCAACTCGTGAATCACCAGAAACAAGTGCACGGCATTTGGATGCTAGCGTGCACGCAATGCCCCCGAACATTTACCCAAGTTGCCACATTCAATCATCACAAAATGGCACACACCACCGAGCGGACACACAAATGCATTGAATGCGAGTGCGCGTTCAAGCATCACTCCTCCCTTGTGGCCCATCAAAAAAGTGTGCACATTGAGACACCATATGTATGTGATGAATGCCCGCGAACGTTTGGATTTGCGTCCCATCTCAAACGCCACAAAAGTACACACGTCGCCGACAAACCATTTCAATGCGACAAGTGTCCGTCGGCGTTTCGTATGCGGAGCACATTGGTGGGGCATCAAAGAGAGGTGCATTTTGGCTTAAAAAAGTATCAGTGTGATGTGTGTATGAAGAAATTTAAACGCAATGAATCGCTGAAAGATCACAAGTTAACACACACCGAGCATACACCATACAAGTGTGACAATTGTCCGACGGTGGCATTCAGCAAGCATTCCCAATTGATGTATCATCAACGGGAGGTGCATGGCATCTGGTCACTACAGTGTGCCGAATGCCCGAGGACATTTTCCCACATCTCCACACTCAATCATCACAAATTGTCGCACACCAAGGAGAGGACGTACAAATGCATTGAGTGCGAATGTGCGTTCAAGCATCGCTCCACCCTGGTGGCTCATCAAAAAAGTGTGCACATTGAGGTGACACCATTTGCGTGTGACGAATGCCCTCAAATGTTTGAATTTGCGTCACAACTCCAACGTCACAAAAGTGAACACGCTGCtgacaaaacattaattgtaatatgCGATAAATCTTCGTCAGAATTTCAGGAGGTGAGTGCAGTGCAGGTGGGATATCAGGGAGAAGAAAGTGATACCCTCAATGAGCAGAAATTGCAGACAAATCCATCATTTAAGTGCAACAATTGTCCGGCGGTGGCATTCAGCAAGTATTCCCACTTTGCGCGTCATCAACGAGAAGTGCACGGCAGCGGATTACTAAAATGTGCGGAATGCCCGAGAACATTTTTGCATGTCTCCACGTTAAATCATCACAAATTGACGCACACCAAGGAGAGGACTTACAAGTGCCCCAATTGCACGTCTGCTTTCAAGCACAAATCTTCACTGATGTCCCATCAAAGGAGTGTGCACGTTGGGTTTGGTCCCTATGCGTGTGATGAATGCCCAAGAATCTTTTCTATGCAGTCTAAATATAGACGACATAAAAGTTTGCACGAAGTGTTGAAGGAAAGTGCAGCCATGAAGTGTGAAGGTGCGCCAATGTGA
Protein Sequence: MELDPLDLQDNVTPSDKTIQIKTEIICEPEEFMEYTQNGQYLKVKPKEEPIENVFSDYELSGRLVSDSIDCVNQSTTANGTDFVAYQDLIQPKTEDNTNIPYTFEDRPMPSNESALLQDNNPTFNYFNTNQNALTFGVSLNKIKTEIFEMEFKCKDCPETFTKKSLLNLHNKAIHLGIKVYSCDQCSKTFARDRSLIAHKQTHIGETPFKCDNCPVGFTKQTQLVNHQKQVHGIWMLACTQCPRTFTQVATFNHHKMAHTTERTHKCIECECAFKHHSSLVAHQKSVHIETPYVCDECPRTFGFASHLKRHKSTHVADKPFQCDKCPSAFRMRSTLVGHQREVHFGLKKYQCDVCMKKFKRNESLKDHKLTHTEHTPYKCDNCPTVAFSKHSQLMYHQREVHGIWSLQCAECPRTFSHISTLNHHKLSHTKERTYKCIECECAFKHRSTLVAHQKSVHIEVTPFACDECPQMFEFASQLQRHKSEHAADKTLIVICDKSSSEFQEVSAVQVGYQGEESDTLNEQKLQTNPSFKCNNCPAVAFSKYSHFARHQREVHGSGLLKCAECPRTFLHVSTLNHHKLTHTKERTYKCPNCTSAFKHKSSLMSHQRSVHVGFGPYACDECPRIFSMQSKYRRHKSLHEVLKESAAMKCEGAPM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -