Scin004862.1
Basic Information
- Insect
- Sylvicola cinctus
- Gene Symbol
- -
- Assembly
- GCA_963854165.1
- Location
- OY974082.1:62405215-62407425[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 7.9e-05 0.004 17.3 0.9 1 23 119 141 119 141 0.98 2 13 0.0034 0.17 12.2 5.8 1 23 146 169 146 169 0.95 3 13 0.00027 0.014 15.6 0.4 2 23 185 207 184 207 0.97 4 13 2.1e-06 0.00011 22.2 0.7 1 23 329 351 329 351 0.94 5 13 6.9e-07 3.5e-05 23.8 3.1 1 23 357 379 357 379 0.98 6 13 0.015 0.78 10.1 3.0 3 23 387 407 385 407 0.97 7 13 2.5e-06 0.00012 22.0 1.6 2 23 426 447 426 447 0.97 8 13 0.0037 0.19 12.0 2.5 1 23 452 476 452 476 0.97 9 13 8e-06 0.00041 20.4 2.7 3 23 484 504 482 504 0.96 10 13 2.9e-07 1.5e-05 25.0 3.1 1 23 510 532 510 532 0.98 11 13 6.3e-07 3.2e-05 23.9 0.8 2 23 539 560 538 560 0.97 12 13 4.4e-06 0.00022 21.2 2.2 1 23 566 588 566 588 0.99 13 13 0.0029 0.14 12.4 2.0 3 23 595 616 593 616 0.96
Sequence Information
- Coding Sequence
- atGTCTGATCTAGACATTACCAAAATATGCATTACGTGTGCTTCAACACCAACTCGATCTCACTTGGTGTCGATTTTAATCTCGGAAGAAATTGATGGCACCAGCCTACCATACTCCAAGATGATTTCTTCAGTCATTAATACTGatGTTACAACTGCGGACGAGAGCATACCTCAACAAATATGTGTGCAATGCATTATCCTAGTCCGGAAGTACTATGCCTTTCAAATGGAATCTGTGAAAGCACTTCGGCGTATCCGAGAAATTACACTGGGCAAAACTGCATGGTCAGATAAAATGGACAATGAGTGTGCTGCGAATGAAAAGTGTACCCAAACTGAAGAGTTGGTTTCGTTTCCTTGTGAATTTTGCAATGTAACTCTTAACTCACAATCAGAGCTTAAGAAACATCGACTTACTCATGATACAACAGATTTTGTTTGCCGTTTTTGTAAGAAAAAGTTCTGTCGACTTCGCAGTTTGCAGACCCATCTTGTAAAGTCACACCCAGAAGTATCGGGTATGCAGCATTCTCGTTTTGCTATCATTAATAAATGTCCTGTGTGCGGAAAAGTATTTGAACGCGGTCAACGCATGCGAGCTCACATTCAAAAGAAACACAATTACGACAATGTAACAGATCTTACTGCAAACACAACAGATAAAAaatcccaaaataaaaaagaacctGAACATGTAAACTACGAGGAATCAGAAAGCGAGCACGTTAATGAGgaagtaaacatttttcatgatGAATCCGGTTCGTCGGAAGAGTCGGACGAGGACATTTTTAGAGAAATCAAAAAAGAAACTTCACCAGTTTATGAaattaatgttattaatgAAGAACAACACGATAATTTGGACGCTTCTTTAAAGCAGGAAGCAGATGATGTTGAAATGGAGGATCATGTATTTTCATCAGAAAATAGAAGCactgttattaaaaaagaagaagaaaaattcGAATTAAAAGCATCATTTTTATGCCAAATTTGCGACAGAGTTTTTACCACCAAACCCAATTTAACTCGCCATGAAAAGGAACATTCGTCTAACAATAAATTCCCCTGCAACGAATGCAACAAAGTGTTTAAACGATTGGAACACCTCAGAAAACATGCAAAACGTCACAAGGATCGTGCTGAATTGTTTTGTCCCACCTGTGGCCAATACTTCCAACACATCAAAAGCTTTcaaatgcacttaaaaaagCACGACAACGAAGAACAAAAGGAGGCGGGGGTAGAAAAGGAATCCCAACCCAGAGCGGAGTgcacaatttgtaaaaaaacattttccggTTCAAAATACTTGAAAGCGCACATGCAGAAACACGAACAGCCAACATATAACTGCACGGAAACGGACTGTGATGctacatttcatttcaagaaAGATCTCACACAACACTCACGCGTCCACGTTGGCAAAAATAGTCACTTGTGTCCCGAGTGCGGCAAATGTTTTGCCAAAGCCACTTATTTGGTCACCCACTTGCGTCGACATCGCGGTGAGAAGGCTTACAAATGCAGCCATTGTGGAAAGACATTTGTGTCGTCCAGTGAGTTGCGGCTGCATGAGCGTTATCACACGGGTGAGACGCTCCTAACGTGCGCCGTGTGTGGCAAGGGCTTTTACAGGGCGAGCACACTGCATGTGCACATGCGAACGCACACCGGTGAGAAACCGTACGAATGTCAACATTGTAATCAGCGATTTGCGCAGCGGCAGGATTTGAATGCGCATGTTAGGCGACACACTGGCGAACGATTTGGGTGTGATCAGTGTGAGCAGAACTTTATACATGCGTATCATTTGAATGCGCATAAATTGAAggtgcacaatatttttgttcaggCGAAGACGGGTAGATTGAAGCGAACTGTTATGCCGACTGTGGTTGAGGCGTCGAAGGCGGAAGATGCATCTCGATCTAATAAAATTGAGTACAATATTGTTAAtgacaatatttgtattaagaTAACGCCTCTTTTGTAA
- Protein Sequence
- MSDLDITKICITCASTPTRSHLVSILISEEIDGTSLPYSKMISSVINTDVTTADESIPQQICVQCIILVRKYYAFQMESVKALRRIREITLGKTAWSDKMDNECAANEKCTQTEELVSFPCEFCNVTLNSQSELKKHRLTHDTTDFVCRFCKKKFCRLRSLQTHLVKSHPEVSGMQHSRFAIINKCPVCGKVFERGQRMRAHIQKKHNYDNVTDLTANTTDKKSQNKKEPEHVNYEESESEHVNEEVNIFHDESGSSEESDEDIFREIKKETSPVYEINVINEEQHDNLDASLKQEADDVEMEDHVFSSENRSTVIKKEEEKFELKASFLCQICDRVFTTKPNLTRHEKEHSSNNKFPCNECNKVFKRLEHLRKHAKRHKDRAELFCPTCGQYFQHIKSFQMHLKKHDNEEQKEAGVEKESQPRAECTICKKTFSGSKYLKAHMQKHEQPTYNCTETDCDATFHFKKDLTQHSRVHVGKNSHLCPECGKCFAKATYLVTHLRRHRGEKAYKCSHCGKTFVSSSELRLHERYHTGETLLTCAVCGKGFYRASTLHVHMRTHTGEKPYECQHCNQRFAQRQDLNAHVRRHTGERFGCDQCEQNFIHAYHLNAHKLKVHNIFVQAKTGRLKRTVMPTVVEASKAEDASRSNKIEYNIVNDNICIKITPLL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -