Scin007567.1
Basic Information
- Insect
- Sylvicola cinctus
- Gene Symbol
- -
- Assembly
- GCA_963854165.1
- Location
- OY974083.1:31618017-31620425[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0004 0.02 15.1 5.6 1 23 120 142 120 142 0.97 2 13 1.5e-06 7.7e-05 22.7 0.9 1 23 147 170 147 170 0.96 3 13 1.2e-05 0.00061 19.9 5.7 2 23 185 206 184 206 0.95 4 13 1.9e-07 9.5e-06 25.6 2.8 2 23 322 343 321 343 0.97 5 13 8.9e-06 0.00045 20.3 7.0 1 23 349 371 349 371 0.98 6 13 0.22 11 6.4 4.4 1 23 377 400 377 400 0.96 7 13 0.00044 0.022 14.9 0.5 2 23 423 444 422 444 0.97 8 13 0.00032 0.016 15.4 4.3 1 23 448 470 448 470 0.99 9 13 2.9e-06 0.00015 21.8 0.2 1 23 476 498 476 498 0.96 10 13 6.9e-06 0.00035 20.6 1.1 1 23 504 526 504 526 0.98 11 13 8.4e-07 4.3e-05 23.5 0.7 3 23 534 554 532 554 0.96 12 13 1e-05 0.00051 20.1 2.2 1 23 560 582 560 582 0.98 13 13 6.4e-05 0.0033 17.6 1.7 1 23 587 610 587 610 0.98
Sequence Information
- Coding Sequence
- ATGGAGGATATGGTGCTTGAAAATGTGGTGTCAATCGACAGTCTTTGCAGAACGTGTATGCGACACGACGACGGAGAGAACATGTTATCCCTATTCGATTCTGTGGTCACAATGGGTGAGGGAGTTCTGACGCCGTTGTCTCAAATGTTGGGCGATTTTATACGAATGGAAGTGACCAACATTGACGAGCTTCCTAAGAAGATTTGCTTGAATTGTGTTGAACATGTGAAGCAATCGTTTATTTTTTGGCAGCAATGTCGCAGTTCGTTTCATTCATTAAAGCAACTAATTCGACCGTCAGTAGACTGTGAGGTGGATCCCAATGAGAAGTGCACCCAGACCGACAGTGTTTCACTACATCAATGTGAAATGTGTGACAAATTCTTTTCGGATTATGAAGAAATGAAGAAACATCGAATGCATCACAAATCCGATGGTTTTAGGTGCAAATTTTGTGGCAAAAGTTACACACGATTAAGCTACCTCAAGGGACACATGGCAGTCGTGCACACATCGTCTCAGGTTCCAGCAACATCGTTTTCCAAAAAGTGCTGCTGTCCCGTTTGCGGCAAACAGTTCACCCGTCCCGAGCACATGAGACGCCACATGCTGCTTCACGAGAATGGTTTTGAAATGAAACCAGAAGAAGAGCTGACACCATCGGATGACAATGTTGATTTTGGAGATGACCATCATCAGGCGGATGATGATTTTGTTGAAGAGGTTGATGCGAAAAACAATCTTACAATGCCCGAAGTTCATATTATTGAAGATCCAACTGAAGCGCAAATAAGTTCTGTTCCCGTAGGAGATGTAGTTCATAATGATGAAAATGTCAATAAAGATGAAGACTCCCAATATGTGCCCGAAGATGATCAGACGGAATTCACAGAAATTGATGAAAGCGATAAATCAACCACCAAAACTTCAAGCAAATCCAAAGCGCCACTTACCAACGACAAGCAATGTCCCGAATGTAACAAAATGTTCACTCGTGCAACACACCTACGTCGCCACATGACTGTTCATACAGACGTcaaagcatttaattgcaacgtTTGCCACAAAGGATTCACACGTTCTGACCATCTTCACATTCACATGCGTAACCACACCGGTGAGCATCCCTTCCGTTGTGAGCCCTGTAACAAAGAGTTTAAGCGGCGCGAACGCCACACAGCACACATGAAAAAGTATCACGCCACAGACAAGGTCACTTCTACTACAGGCAAAGTGACTTCCAATGTGACTGTGGATCCAGCGACTGTGTGCAATGTCTGCCAGAAGCCATTCTCCAGCGTCAAGTATATGAAAATACATGCAAAAACGCACATCGATAATTTCACCTGCAAAACGTGTTCCATCAAGTGCGAGAACCGAAGCGAACTTCAAAAGCACGTCAAAACGCACATCAATGAGCGGCCGTTCCTTTGCTCGGAGTGTGGTTTGCGCTTTGTGCGTGCTGACTACCTGGTGGTGCACATGCGCCGGCACAAGGGTGAGAAACCGTACAAGTGTAAATTCTGCAACAAAGGTTTTCCGCGCGCCACCGATCTTACGGTGCACGAGCGCTATCACACCGGCGAGAAGACACATTTGTGCACCATCTGCGGCAAGGGATTCCAGAGGGCGTACAACCTGCTGGTGCACATGCGAATTCACACGGGTGAGAAACCCTACCATTGTCCACATTGTGTGAAAAGTTTTGCGCAGGGCAACGATCTGAAGGCGCACATTCGTCGACACACAGGGGAGCGATACAAGTGTGATAAATGTGACGCCGGATTCATACAAGGCTATCATTTGACGCAGCACAAGAGGACTGTGCACAATTTGGATGTAAAGTCGCATATTCGGAGAGTGGAGAAGTTTATTTCGACTGATGCTAAAGAAGAGCTGAACGAGGAGGATGACGAGATGGTTGCTGGTGATGTGAATGATTGTGAGCAACGTGAGTACGACATAATAGAGAATTTTATTGAGGAGCCGATTCATATTAAAATGGAACCAACTGCGTCAGGACACATTGAGCCCAATTCAATggaCGAAACCACATCTTACCACTCCGAAGAGGTTCCTGTCAGCATATATTACATTCGGGAAACAAAATAG
- Protein Sequence
- MEDMVLENVVSIDSLCRTCMRHDDGENMLSLFDSVVTMGEGVLTPLSQMLGDFIRMEVTNIDELPKKICLNCVEHVKQSFIFWQQCRSSFHSLKQLIRPSVDCEVDPNEKCTQTDSVSLHQCEMCDKFFSDYEEMKKHRMHHKSDGFRCKFCGKSYTRLSYLKGHMAVVHTSSQVPATSFSKKCCCPVCGKQFTRPEHMRRHMLLHENGFEMKPEEELTPSDDNVDFGDDHHQADDDFVEEVDAKNNLTMPEVHIIEDPTEAQISSVPVGDVVHNDENVNKDEDSQYVPEDDQTEFTEIDESDKSTTKTSSKSKAPLTNDKQCPECNKMFTRATHLRRHMTVHTDVKAFNCNVCHKGFTRSDHLHIHMRNHTGEHPFRCEPCNKEFKRRERHTAHMKKYHATDKVTSTTGKVTSNVTVDPATVCNVCQKPFSSVKYMKIHAKTHIDNFTCKTCSIKCENRSELQKHVKTHINERPFLCSECGLRFVRADYLVVHMRRHKGEKPYKCKFCNKGFPRATDLTVHERYHTGEKTHLCTICGKGFQRAYNLLVHMRIHTGEKPYHCPHCVKSFAQGNDLKAHIRRHTGERYKCDKCDAGFIQGYHLTQHKRTVHNLDVKSHIRRVEKFISTDAKEELNEEDDEMVAGDVNDCEQREYDIIENFIEEPIHIKMEPTASGHIEPNSMDETTSYHSEEVPVSIYYIRETK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -