Scin008101.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Sylvicola cinctus
Gene Symbol
su(Hw)
Assembly
GCA_963854165.1
Location
OY974083.1:38583795-38586623[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 0.00035 0.018 15.3 0.1 1 20 74 93 74 95 0.94
2 13 0.02 0.99 9.8 0.2 2 23 189 211 188 211 0.91
3 13 1.5 78 3.8 0.4 1 23 217 239 217 239 0.91
4 13 5.4e-05 0.0027 17.8 2.2 1 21 245 265 245 266 0.95
5 13 4.7e-07 2.4e-05 24.3 0.2 2 23 279 300 278 300 0.96
6 13 1.5e-07 7.5e-06 25.9 1.5 1 23 310 332 310 332 0.99
7 13 3.3e-07 1.7e-05 24.8 0.3 1 23 338 360 338 360 0.98
8 13 1e-06 5.1e-05 23.3 2.9 1 23 366 388 366 388 0.99
9 13 3.9e-05 0.002 18.3 3.8 1 23 394 416 394 416 0.95
10 13 2.1e-06 0.00011 22.2 1.0 1 23 422 445 422 445 0.97
11 13 4.2e-06 0.00021 21.3 0.3 3 23 453 473 451 473 0.97
12 13 0.00067 0.034 14.4 0.5 1 23 479 502 479 502 0.95
13 13 0.00046 0.023 14.9 0.3 2 23 508 530 507 530 0.97

Sequence Information

Coding Sequence
atggTGCGTGGtcgtaaaaatcaaaatgccaCATCAGCGGCTTCCGACACAGTTATAAACGTCAAAATTAATGCCAACAATGAAATCGAGTCGCTGGAAGTTGATGACAGTGATCCAGAGGAGGGGACTTCTAATGCCAAGGCTCAAAAGGATGGCGAAGACAATGCTCAAGACGATCAGGTGACTGAAATAAAAGTGGAAAGTCGTACGGTTATTGAGCACGTTTGCGGAGGATGTGACAAAATATACAAGTCATTAGCGGCATTAAAGCGGCATTTAACAATATGCCGAACAAAGACTCCGACGTcaaagattaataaaaaaataacaattaaaaagcaaaagcaggaaaaaaatgaagaggatgaagaagaagaagagatGGAAGAAGTTAAGTTTCAACCGCCATTGAAAAAACTTCGACAACAATTTAAGGAAGATAAAGTTGAAACAGATGAGGAGAACGATATTGGAATGGAAAcagttgttttgaattttactgATGACCAAAAATTCTGCTTTTGCTGTGATGAAGAAATGGAATCTGCTCATAGTGGTCACATAAAATGCGAGGCATGTCCCAAATCGTTCAAAAGCTTTCCAAGTATTAACAAGCACGTGGAACTGTTGCATGCTGATTGCACTGACTTCCCGTGTACCTTTTGCAATGCAACATGTCCCGATCAGGAGATTCTTGATCTCCACCTGGACAGCCATCGTAGTGGTAAGCCATTTAGCTGTATGAATTGCGGCAAAGATTTTACTCGTAAATACCACTTGGATCGTCATCTCAATTACACCAGCTGTGACACATCGAAACCCAAATCCGAACTGCCATGTCAGGTGTGTGGCAAGGTGTTCTCACGCACAGACAATTTGCGTGAGCATTTACGTGGCCACATTGGTCAGGCGACACGTCGCCGTGACTACCAATGTCCACATTGTGAGAAATCGTTTTACGGTTCATCCTTGTTGAATATTCATATTCGGACACACACTGGAGAGAAGCCGTTTCCGTGTGATCTGTGCGACAAGTCGTTCCCCTCTAATGGTGCTTTGCGCAAGCATCGTCGCATGCACACCGGAGAGCGTCCATATCGCTGCGAAATATGTAATCGATGCTTTTCCGCCAAGGAGACACTCAACAGACATATGAAAATTCACACAGGTGATAGACCTCATATCTGTACGATTTGCAATAAGAGTTTCATTCAACGGACACAATTGCGTGCCCATTTGTCGCATCATACCGGCAATCTTGAGTTTGAGTGTGATCAGTGTGATAAGTCGTTCTCGAGAAAACAACGTCTTGAGGCGCACATCAAATATGAACACGAGAATGCTGAGAAATTCGGTTGCACTTTGTGTGACAAGGCGTTCAGCCGGAAAGAAGAGTTGGCGCGACACATTGATTCGCATATGGGCGTGAAAAAATTCAAGTGCGACGAATGTGACCAAGGTTTTGCTTCGGCTTACAGGTTAGAGTCACATAAAACATCAAATCACCCCAAAAAGCcgtcaaaatgcaaaatatgcgCCGTTGAATTTGAAAAGATGGACCAACTTATTCGTCACATGCGCTCGGATCATCGTGACATATTGCAGGACTTTGTAGGTGATTCAGCTGAATTGGAATTGTCTGGCACCGTCCTAAATATTTCCACTGTGAACGAGGATATTGAGGCGGAGCAAGCCATGTATGATGAGGAAGTGTGCGCAGAAGGGGAGGAAGAGGTGGTGTTGCAAGATGTGCaacaaattgaatacattACAAATGAGCAAGAAGAATTTGAAGAGAATTATGACGCTCCACTTGTGTTTGTAACATCTGAGGGAGAAATAAACGAGGAGACTCCATTTGAGAATGCTGTTGAAGTAAAGTATATTGTACGTGAAAGCAATAATGCTGTGAAAATTAAGGAAGAGAAGTCAACGACTGTGACATCGGATAAGAAGGATGGTGTTAAGCAAAAATTTAACGCAAATGTAGAGGCCGCGCAAAAATATGTAGTAAAAAAAGCCAAAGAATGGCAGGAAAAGATGAAGAAGGATAAATTGAAGCAAGATAAGGAAGAAATGAAACGGGAGTTGGCGGCTAAGAAACTGGAGAAAGCTAATGAAGAACAAGTTCTCAAAGAAAAAGCCGCTGCCGCTGCGTTAAAACGGAAACAAAAAGACATTGCTGATGCTAAGCAACGGTTAATTGAGGAGGAAGAGGCACGAAACCTGGCCCAAAAGGAAACGCCAActacaaaacaaaagcaaaaatctcaaaatgctGCAATGAAACGTGAAAATACGGATGAAGAGGATACGCCAATATTTTTAGATGACAACACACTGAAGAAACATGTGTCAGAGTTACTTAGTATGCTGGTGGATGAGGAGACTTTGAATAGTTTTGGGTGGCCTTCAGCACCTGTCGAAGAAGTGCTCAGTTCTGTTATTGAACAATGCGGACAAACTCCAGCTGATTATAACACCTCATCCGATTACACAACGAAAATTCGGGAAAATGCTAAACTTTTGTTCACCGTCGTTattgataacaattttataaaaacgcTTCTCAACAATCATACTGTAGATGAAGTCATTGTTCAAGTTTTGAAATTGGCACAATCAAAATCTTTGTAA
Protein Sequence
MVRGRKNQNATSAASDTVINVKINANNEIESLEVDDSDPEEGTSNAKAQKDGEDNAQDDQVTEIKVESRTVIEHVCGGCDKIYKSLAALKRHLTICRTKTPTSKINKKITIKKQKQEKNEEDEEEEEMEEVKFQPPLKKLRQQFKEDKVETDEENDIGMETVVLNFTDDQKFCFCCDEEMESAHSGHIKCEACPKSFKSFPSINKHVELLHADCTDFPCTFCNATCPDQEILDLHLDSHRSGKPFSCMNCGKDFTRKYHLDRHLNYTSCDTSKPKSELPCQVCGKVFSRTDNLREHLRGHIGQATRRRDYQCPHCEKSFYGSSLLNIHIRTHTGEKPFPCDLCDKSFPSNGALRKHRRMHTGERPYRCEICNRCFSAKETLNRHMKIHTGDRPHICTICNKSFIQRTQLRAHLSHHTGNLEFECDQCDKSFSRKQRLEAHIKYEHENAEKFGCTLCDKAFSRKEELARHIDSHMGVKKFKCDECDQGFASAYRLESHKTSNHPKKPSKCKICAVEFEKMDQLIRHMRSDHRDILQDFVGDSAELELSGTVLNISTVNEDIEAEQAMYDEEVCAEGEEEVVLQDVQQIEYITNEQEEFEENYDAPLVFVTSEGEINEETPFENAVEVKYIVRESNNAVKIKEEKSTTVTSDKKDGVKQKFNANVEAAQKYVVKKAKEWQEKMKKDKLKQDKEEMKRELAAKKLEKANEEQVLKEKAAAAALKRKQKDIADAKQRLIEEEEARNLAQKETPTTKQKQKSQNAAMKRENTDEEDTPIFLDDNTLKKHVSELLSMLVDEETLNSFGWPSAPVEEVLSSVIEQCGQTPADYNTSSDYTTKIRENAKLLFTVVIDNNFIKTLLNNHTVDEVIVQVLKLAQSKSL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
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