Basic Information

Insect: Sylvicola cinctus
Gene Symbol: -
Assembly: GCA_963854165.1
Location: OY974082.1:12657562-12660322[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.011 0.55 10.6 1.7 1 23 47 69 47 69 0.97

2 14 0.00052 0.026 14.7 0.5 1 23 75 97 75 97 0.96

3 14 1.4e-06 6.9e-05 22.9 0.4 1 23 196 218 196 218 0.98

4 14 2.5e-06 0.00013 22.0 3.3 1 23 224 246 224 246 0.99

5 14 7.7e-07 3.9e-05 23.6 1.1 1 23 252 274 252 274 0.97

6 14 8.9e-06 0.00045 20.3 1.1 1 23 280 302 280 302 0.98

7 14 3.1e-07 1.6e-05 24.9 0.6 1 23 308 330 308 330 0.97

8 14 8.2e-05 0.0041 17.3 1.2 1 23 336 359 336 359 0.98

9 14 0.00015 0.0077 16.4 2.2 1 21 457 477 457 479 0.96

10 14 1.9e-06 9.7e-05 22.4 3.9 1 23 485 507 485 507 0.99

11 14 4.7e-05 0.0024 18.0 0.6 1 23 513 535 513 535 0.98

12 14 1.4e-08 7.3e-07 29.1 2.2 1 23 541 564 541 564 0.98

13 14 1.7e-05 0.00087 19.4 1.9 1 23 570 592 570 592 0.97

14 14 1.2e-05 0.00059 19.9 0.9 1 23 598 621 598 621 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.011	0.55	10.6	1.7	1	23	47	69	47	69	0.97
2	14	0.00052	0.026	14.7	0.5	1	23	75	97	75	97	0.96
3	14	1.4e-06	6.9e-05	22.9	0.4	1	23	196	218	196	218	0.98
4	14	2.5e-06	0.00013	22.0	3.3	1	23	224	246	224	246	0.99
5	14	7.7e-07	3.9e-05	23.6	1.1	1	23	252	274	252	274	0.97
6	14	8.9e-06	0.00045	20.3	1.1	1	23	280	302	280	302	0.98
7	14	3.1e-07	1.6e-05	24.9	0.6	1	23	308	330	308	330	0.97
8	14	8.2e-05	0.0041	17.3	1.2	1	23	336	359	336	359	0.98
9	14	0.00015	0.0077	16.4	2.2	1	21	457	477	457	479	0.96
10	14	1.9e-06	9.7e-05	22.4	3.9	1	23	485	507	485	507	0.99
11	14	4.7e-05	0.0024	18.0	0.6	1	23	513	535	513	535	0.98
12	14	1.4e-08	7.3e-07	29.1	2.2	1	23	541	564	541	564	0.98
13	14	1.7e-05	0.00087	19.4	1.9	1	23	570	592	570	592	0.97
14	14	1.2e-05	0.00059	19.9	0.9	1	23	598	621	598	621	0.98

Sequence Information

Coding Sequence: ATGAATGGATTGGATATCGTGCATAGTGGCCGAGCTACAAAATTCGTTCGTATTCAAGACCAGTGCCAGCAAGGAATGGCCATTCCAGAGATGATGGAAGTCGCAGTAATctacattaataaatttggtaGAATTTTCTATCATTGTTCAATTTGTTCGATGACCTTAACACTATCAAAGAATATGGAATCTCATATGCAGGATCATTTTAGGCATTTCCCGTACAGGTGCCACATTTGTCCTGAACAATTTGATTCACTTGATCCTTTAATAAAGCATTCAAATTTACACTTGAGCTCAAAACAGAAATTGGAACACACCGACCCACTACAAAGTACAGCCATGAATTCCGAAACAATGGcatgtgatttaaaattaagcgaAGGCGGAGAAGCAATTGTAAAAAAGGAAGAACCATTCGATACTGTCGAGAAATTTCAAGAAGACGATTATTGTTCTCTCGATGAGAATCCATTCTCATCAGAGGAGGAAATATTTGATAATGAAGTGGAACTACATCAGAAAAATAAACGTAAGCATGTTAAGAAGAAAgttcttataaataaaacagaccCCACCAAAAGATATCCTTGCGACGTCTGTAAAAAATCGTTTGTTTCTAAGAACAATGCTAGAATACATATGAGAGTCCACACGGATGAAAAACCGTATAAGTGTTTAGTGTGTGACAAACGGTTCACCCATTCCAGCTATATTAATATTCACATGAGATCACATACTGGAGAAAAGCCATACATGTGTACTTTGTGTGGATTAACATTTAAGTCTCAGTCATCTTTAACTCGACATGTTAAAGATCACTCTCGTACTCGTGATTTTGAATGTGATAAATGCGGGAAAAGATTCGCGAAAAAAGAAGTTCTACGGACACACACGCTGACACACTCGGAGCAGCGTCCATTCGCTTGTGACATCTGTGGAAGGAGTTTTCGAAGACAAAATGCTTTGAGACAGCATTTAAAACTTCACTCCGATGACAAGGAGtatgtgtgcaaaatatgtGATAATGCGTTCTTCCAACTTGCTGGTTTGCACAATCACATGAAGACTCGTCATCGTGCGTTAGTCGGACCACCACAAACTTTATCCACTCAATCCGATACGGTGTTGCctgatataaatttaaacgtaGGAAAAGAACAAATAGCAGATGAAGAGGATGAACGATTTGAGCCTTTTGCTGCCGGAAAATCCCAAGAAGATAGTAATTGTTCTCTCTATGACAATCTTCTCATATTATCTTCCGAAAATGAAGCGGCAGAATCGGAAATGGGACCACCTGAGAACAATAAACGTAAATATGTCAAAGGGAAAGTacgaacaaacaaaaaagaccCAATCAGAAGATATCCTTGCAAAGTCTGCGAAAAACTTTTCGCTTCCAAAGACAATGTTAACAAACACATGAGATGTCATACAGGTGAAAAGCCCTATCAGTGTTCATTGTGTGATAAACGGTTCAGACATTCCAGCTATATTAATATTCACATGAGATCACATACTGGAGAAAAGCCATACATGTGCACTATGTGTGGGCTTACATTTACAATCAAGTGGCAATTAGCCGATCATATGCACATTCATTCAAATACGCTAGATTTTAAATGCAGCCAATGTGACAAATCCTTTGCGAGAAAAAGAAACCTGCAGAAACATATACGCTCTGTGCATTCGGGGCTGCGTCCACATTCGTGTGACatctgtgaaaaaaaatttcgtgtTAAGGATGCATTGCGACAGCATTTAAAACTTCACTCCGATGACAAGGAGTATAAGTGTAAAATATGTGATGATGCGTTTAGTCAACCAGCTGGATTGCACAGTCACATGAAGACTCGCCATCGTACATTAGCGATGGGAAGTGCAAGGGCAAAGACTAAGATTCAATATTAA
Protein Sequence: MNGLDIVHSGRATKFVRIQDQCQQGMAIPEMMEVAVIYINKFGRIFYHCSICSMTLTLSKNMESHMQDHFRHFPYRCHICPEQFDSLDPLIKHSNLHLSSKQKLEHTDPLQSTAMNSETMACDLKLSEGGEAIVKKEEPFDTVEKFQEDDYCSLDENPFSSEEEIFDNEVELHQKNKRKHVKKKVLINKTDPTKRYPCDVCKKSFVSKNNARIHMRVHTDEKPYKCLVCDKRFTHSSYINIHMRSHTGEKPYMCTLCGLTFKSQSSLTRHVKDHSRTRDFECDKCGKRFAKKEVLRTHTLTHSEQRPFACDICGRSFRRQNALRQHLKLHSDDKEYVCKICDNAFFQLAGLHNHMKTRHRALVGPPQTLSTQSDTVLPDINLNVGKEQIADEEDERFEPFAAGKSQEDSNCSLYDNLLILSSENEAAESEMGPPENNKRKYVKGKVRTNKKDPIRRYPCKVCEKLFASKDNVNKHMRCHTGEKPYQCSLCDKRFRHSSYINIHMRSHTGEKPYMCTMCGLTFTIKWQLADHMHIHSNTLDFKCSQCDKSFARKRNLQKHIRSVHSGLRPHSCDICEKKFRVKDALRQHLKLHSDDKEYKCKICDDAFSQPAGLHSHMKTRHRTLAMGSARAKTKIQY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -