Scin004371.1
Basic Information
- Insect
- Sylvicola cinctus
- Gene Symbol
- ZFY
- Assembly
- GCA_963854165.1
- Location
- OY974082.1:55790930-55794438[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.00044 0.022 14.9 2.8 1 23 86 108 86 108 0.99 2 21 4.6e-05 0.0023 18.0 0.6 1 23 114 136 114 136 0.97 3 21 0.03 1.5 9.2 2.1 2 23 143 164 143 164 0.97 4 21 0.0028 0.14 12.4 0.2 1 23 170 193 170 193 0.94 5 21 2.9e-05 0.0015 18.7 0.5 1 23 218 240 218 240 0.97 6 21 0.00023 0.012 15.8 2.4 1 23 246 268 246 268 0.99 7 21 2.1e-06 0.00011 22.2 1.1 1 23 274 297 274 297 0.97 8 21 3.6e-07 1.8e-05 24.7 1.0 3 23 384 404 382 404 0.96 9 21 1.7e-06 8.5e-05 22.6 0.7 1 23 410 432 410 432 0.98 10 21 0.0002 0.0099 16.1 2.6 1 23 447 469 447 469 0.98 11 21 1.9e-05 0.00097 19.2 4.9 1 23 509 531 509 531 0.98 12 21 3.9e-05 0.002 18.3 1.0 1 23 537 559 537 559 0.98 13 21 7.3e-05 0.0037 17.4 2.5 2 23 565 586 564 586 0.97 14 21 0.0023 0.12 12.7 4.3 3 23 592 612 591 612 0.98 15 21 0.008 0.4 11.0 2.5 2 23 812 833 812 833 0.98 16 21 0.00017 0.0088 16.2 2.9 1 23 839 861 839 861 0.98 17 21 4.2e-06 0.00022 21.3 2.0 2 23 869 890 868 890 0.97 18 21 0.00044 0.022 15.0 1.8 1 23 896 918 896 918 0.99 19 21 0.00014 0.0072 16.5 2.2 1 23 969 991 969 991 0.98 20 21 0.011 0.55 10.6 1.5 1 23 997 1019 997 1019 0.98 21 21 0.0018 0.09 13.1 0.2 3 21 1027 1045 1025 1046 0.94
Sequence Information
- Coding Sequence
- atggatGAGTTCAGCGCAGACTTTAATATCTCCAGCAATAGCTTCACATCCAGAAATGACATAGACATCAATTCCGTCTACAATGACtatgaaaatattgatgaattgaatttgagTGGGCTTTCCAGTTTCATCGAAAAATCCTACCCAAGATACTCCAACAACGAAACATTTCGCAATGATATCTCAAAAACAGTTTCTGTGTCACGCAAACGAAAGCGTAAACAAAGAAAGCCCAATAATTGCATCGTCAGATATCGATGCACCAAATGCTCTGAACAATTTGAATCATTTCGAGAGCTACAGGTACATCGAAGAAAGCACATCCACCAAAAACCACACAAATGCGATAAGTGCTCCGAATCCTTCAATGTGTGGGACAATCTTCAGTTGCACGCAGCAACTCACATCAGCAAGACACCGGCGGAATGTCCGCGTTGTCATGTGATGTTTAACAGAATCGCCAGTTTTCACGGTCACATTCagacacattttaaaagtgagTACTTTACTTGTGATGTGTGTCAACTGACATTTAACTTTGAGCCTATGCTCAAGGCCCACATCGCTGAAAAGCATCCAACTAGAGctccaaaaattaaatcaccaCGCAAGGCGAAACCGACAGAAACAATCCTTGAAAAAAAGCGCCATCCCTGTCAATTATGTGGTAAAAGATTTCAAAAACCCAGCGGTCTTGTCCGTCATTTACTCATCCACAAAGGACAACGCCCCTACAAATGTAATGAATGTGAATATGCTTGCAATCAAAAGGGTACCTTGGAGAACCACAAACTCACTCACACTGGTGAAAAACCATTTGCATGTCCTAAGTGTCCACAACACTTTGTGCAACGTTCCAATCTCAGTGTTCACATGAAGCGGGTGCATCCGGTAGACGACACACGATTAGTTTCGTTTCCCTGTAGCAATAACGTTAGGGTAGATACTAACCAGGTTATGGCGCAACTAATGGAGCTACAGCCACAAAGTTTGGTTGCGGCTGAGAAAATAGCcgataaattaaacaatgaaaatcaAGTGGGCACAGGTGATCAGTTTATTCGTTTGCAAGATGTGGCTGAAGATGGTTCAGTCGTATATCGATATGTGAAAAAGGTGATCATTAATGAAGAgcgcattttgttttgtgtattttgtaacaaatcaTTTCGTCGTCCATCTGATCTTTTGAGGCATATGAGAATTCATACCAAAGAGAAGCCATTTGTGTGTCAAATTTGCAATAGACGCTTTGCCATTAAAAGTACATTGAATAATCATATGAGGGTACACACAGCCAAAACATCACCGGATAAGGATCAAATTAGttttccattttcatgtCAGTATTGCGgacaaaaacttaaaactgAACATCAGTTAAAGATTCATCTCGAAACGCATGAACGTCAAAAATTGGATGATTTAAGTATCAACATTGCTTTTAAGGAACCAATCGTTTTTGATCAGAATGGAACTGTTTtgaCTACTACAGAAGATGTCCAGAATGAAACAAGATTACACCAATGCAAGTTTTGTGATGCTTCCTTCAAACAAAGTGCTCATCTTAAGCAGCATATCAACAGCCACTTAGGAATAAAATCGTTTGAATGTCCGACgtgtaaaaaATTATTTGGGAAGAACAGCACTTTGCAGGAACATATGTTAAGGCACCAACCAAAGAAgcttaaatgtaataattgcCCTTCCACATTTTACAAGCAATCGACGCTGAACAATCATCAGAAAACCCATACTCAACGTATTTTATGTCCGTATTGTCACAAAGCATTTAAAACCAAAGGATCCTGTAAGCTGCacatcaaaattcataaatacgATTTACTAAAAGGAGTGCAATTCGACTCTAATCAATCTGAAGGAGTACCTGAAAATGCAGAATGTATAAGCTATGACTTAAATGAAAGCGTTCAAGCAATTGAAACATCAACTGCTCTGCCAGAATACGATCATAAAAATGCTCCTGATCAACACCCtgataattttgtaattcttCATCCAGATGTTCCTCAAGAATCATGTGAAGATAATGTCCAATGTGTGTTTCTGGTTGATTATTCTGATAATCCTAATGAGGCAGGCATTGTAAATCAAAACTGTGTTATAGTTCAGAATTCGCTAGAAAATAATCTTCCACACGATCATTTAATTGAAGACGATAACGTTATGTGGATCCCACCCCCAAATACAATTATCCCAATTCAATCACAAAATGACGACATAAATAATCACTTTTCTATTGATCCAAAGTTATTGCACAATAACTGCGGTGAGAGGAGTGTTGAGACCCAAGAAATGGATAAGGCTTATTTAGAACAATCAACAAAACAGGTCGCAACTTTATTTGCAGATACTCCGAATAACGGAATAATTTTGAACTCTGTAAAGCATTCCAAAAATCGTGAAAACCGCTGCCATTTCTGCGCAAAAGTATTCCTAAAACCAATTGACTTACGACGCCATCTACGTCGCCATACAGGTGAGCGTCCATTTGTCTGCAATATCTGCACcaaaccatttaaattgaaatgcacaCTGGACTCTCATATGAATACACACATGGTTCCACGAGACATTTCAAAGTGCCACATTTGCGCGAAAAGTTTTACAACTCGTAGCGGCCTTAAAATTCACATGACGGTGCACACGGGAAAGCGTCCATATAAGTGCACTTTTTGTGAACTCACTTTTCGAACAGTTGGAAATCGCAACTCCCACCAAAGAGTGCATTCAAAAGTGTCCACAAAGCAAAGACCACCACCTCGTGTCAATGTAcagcaatcaaatttaatggtACTGGCCAAAACTGTCAATGACATCAACTTTGAGATCAACGCTGCTACTGCGGAAACAGCAGTTCCTGTTAAAAAGAAGTCACCATATTCGTGCCTAACTTGCTTGAAGACGTTTGAAAAGAAGTCCAGCTTAACGAGACATGAGTTGACACACACCAAGGAGCGTCCTTTTGAGTGTTCAATATGTCATGATCGATTCAATCAAAAGGCGATACTTTCAAATCATATGAAAATTCATTCTTCAGTCATGCCTTTTGGCTGTGAGTATTGTTGGCAGACCTTTCGTTTAAAAGGAAATCTTTCAAAACACTTGTTGGTGTGTAAAGCTAAAGCTCGAATAAGAGACGAAACATCTTCAATTGATATGAATCAAGTCTCTTAG
- Protein Sequence
- MDEFSADFNISSNSFTSRNDIDINSVYNDYENIDELNLSGLSSFIEKSYPRYSNNETFRNDISKTVSVSRKRKRKQRKPNNCIVRYRCTKCSEQFESFRELQVHRRKHIHQKPHKCDKCSESFNVWDNLQLHAATHISKTPAECPRCHVMFNRIASFHGHIQTHFKSEYFTCDVCQLTFNFEPMLKAHIAEKHPTRAPKIKSPRKAKPTETILEKKRHPCQLCGKRFQKPSGLVRHLLIHKGQRPYKCNECEYACNQKGTLENHKLTHTGEKPFACPKCPQHFVQRSNLSVHMKRVHPVDDTRLVSFPCSNNVRVDTNQVMAQLMELQPQSLVAAEKIADKLNNENQVGTGDQFIRLQDVAEDGSVVYRYVKKVIINEERILFCVFCNKSFRRPSDLLRHMRIHTKEKPFVCQICNRRFAIKSTLNNHMRVHTAKTSPDKDQISFPFSCQYCGQKLKTEHQLKIHLETHERQKLDDLSINIAFKEPIVFDQNGTVLTTTEDVQNETRLHQCKFCDASFKQSAHLKQHINSHLGIKSFECPTCKKLFGKNSTLQEHMLRHQPKKLKCNNCPSTFYKQSTLNNHQKTHTQRILCPYCHKAFKTKGSCKLHIKIHKYDLLKGVQFDSNQSEGVPENAECISYDLNESVQAIETSTALPEYDHKNAPDQHPDNFVILHPDVPQESCEDNVQCVFLVDYSDNPNEAGIVNQNCVIVQNSLENNLPHDHLIEDDNVMWIPPPNTIIPIQSQNDDINNHFSIDPKLLHNNCGERSVETQEMDKAYLEQSTKQVATLFADTPNNGIILNSVKHSKNRENRCHFCAKVFLKPIDLRRHLRRHTGERPFVCNICTKPFKLKCTLDSHMNTHMVPRDISKCHICAKSFTTRSGLKIHMTVHTGKRPYKCTFCELTFRTVGNRNSHQRVHSKVSTKQRPPPRVNVQQSNLMVLAKTVNDINFEINAATAETAVPVKKKSPYSCLTCLKTFEKKSSLTRHELTHTKERPFECSICHDRFNQKAILSNHMKIHSSVMPFGCEYCWQTFRLKGNLSKHLLVCKAKARIRDETSSIDMNQVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -