Scin009632.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Sylvicola cinctus
Gene Symbol
ZFAT
Assembly
GCA_963854165.1
Location
OY974083.1:59120096-59123677[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 30 1.9e-06 9.8e-05 22.4 3.7 1 23 61 83 61 83 0.98
2 30 0.0082 0.41 11.0 0.2 1 23 90 113 90 113 0.97
3 30 2e-05 0.001 19.1 0.8 1 23 120 142 120 142 0.99
4 30 0.00038 0.019 15.2 0.3 1 23 148 171 148 171 0.96
5 30 0.12 6.3 7.2 0.6 1 23 175 197 175 197 0.97
6 30 0.032 1.6 9.1 0.4 1 23 203 226 203 226 0.93
7 30 0.89 45 4.5 6.1 1 23 233 256 233 256 0.97
8 30 0.00087 0.044 14.0 1.7 2 23 289 311 288 311 0.96
9 30 2e-05 0.001 19.2 0.2 1 23 317 339 317 339 0.96
10 30 0.96 49 4.4 0.0 1 23 345 368 345 368 0.89
11 30 8.1e-05 0.0041 17.3 1.4 1 23 375 397 375 397 0.99
12 30 2.5e-07 1.2e-05 25.2 2.0 1 23 403 425 403 425 0.98
13 30 9.1e-05 0.0046 17.1 0.4 1 23 431 453 431 453 0.98
14 30 0.0014 0.072 13.4 0.2 1 23 477 499 477 499 0.99
15 30 0.00027 0.014 15.6 1.6 1 19 505 523 505 528 0.96
16 30 1.7e-05 0.00087 19.4 1.4 1 23 534 556 534 556 0.98
17 30 0.0011 0.058 13.7 4.0 1 23 796 818 796 818 0.98
18 30 6.8e-06 0.00034 20.7 0.4 1 23 823 846 823 846 0.96
19 30 5.2e-05 0.0027 17.9 0.7 1 23 852 875 852 875 0.98
20 30 0.56 28 5.2 1.8 1 14 881 894 881 904 0.80
21 30 0.00075 0.038 14.2 0.5 2 23 911 933 910 933 0.96
22 30 0.00017 0.0086 16.3 4.1 1 23 937 959 937 959 0.98
23 30 1.8e-06 9.3e-05 22.4 0.8 1 23 965 988 965 988 0.97
24 30 0.0019 0.095 13.0 1.9 1 23 994 1016 994 1016 0.98
25 30 0.51 26 5.3 0.7 1 23 1022 1045 1022 1045 0.96
26 30 0.00013 0.0065 16.6 1.3 1 23 1052 1074 1052 1074 0.96
27 30 0.00026 0.013 15.7 6.0 1 23 1080 1103 1080 1103 0.97
28 30 0.0012 0.061 13.6 0.9 3 23 1111 1131 1109 1131 0.96
29 30 0.00015 0.0077 16.4 0.1 1 23 1138 1160 1138 1160 0.97
30 30 2.3e-05 0.0011 19.0 2.2 1 23 1166 1189 1166 1189 0.97

Sequence Information

Coding Sequence
ATGGAAGTTGACATTGAACTCGATCATGTTAACGATTTAGAAGCCGAGAAAATCATCGCATCATCTAGAGACAGCGCTACAAACTCTGGGCTGGAAcctttatttgaatttgtagACTGCTCCGAAGCATATTCAAAGCCAGCAGTAAAAGATGTCAACATTGATGTAAACGTAGCTATATATAAGTGTACTGATTGTGACAAATCCTTCAAGACTCAATTCCAATTGacaattcataataaaaaacatctcACTGGAGGAAAACCCTTTACATGTGAAGAATGCTCCGACACgtttgaaaaagaaattgatcTGAAGCAACACCTCAAAATAGTACATCAGCTCAAATGGAAGCCATTTCAATGTGATGTGTGTGACAAATCATTTTCTATCCAAAGAAGGCTTACTATACACACGCGAGTGCACACCGGTGAGCGGCCGTACGCTTGTGAGTTCTGCCCCGAAACTTACAAAAGTTCGGATGAACTTCTTGTGCACAAGAAGTCGATGCATTTTGAATCATATGCATGCGACGAATGTTCCTACACATGCATCAGCGAAGCCATACTTACCAGTCACAAACGCATTCACAATGgggaaaaaacatttgtttgtgACAAATGTCCTGCtgcatttctttataaaaatcaacTCAAGCGTCACAACCAATTGGTGCATCAACAGACAACGAAAGCATTTAATTGCCACatttgttcaatttcattgcataCAGAACTCAGTTTGCATCGGCATTTAAAGAAGTCTCATGACTACAAGTGGTCTTGCAAAATATGCTGTAAACCCTTTCAAAGTTTGACCAGATGCACTAGGCATGAACGATCACACACCGGTGAGAAATCAGTTAAATGTGATAAGTGTTTCAAACAGTTCACATCCACTACGTCTTTGAAACAACACTACCTTGTGGATCATAATGACAAGTTTCAATATTTGTGCGACGAATGTCCTAAAAGTTTTCGAGAAAAAGTTAATCttgaaattcacaaaaatgtgCACACCAAAAAAACACCATTCGAATGTGATGAGTGTGTGGAAGCATTCACGGCGATTACTCCGttaattattcacaaaaaagCAGCACATCAATGTACAGTAAAACCTTATGAATGTGATCAATGTGACGCCTCCTACGCATCTCAATGTTTACTGACTAGTCACCAAAGAAGTCACACTGGAGAGCTGCCCTATCCATGTTCAGATTGTCCTAAACGGTTTAAGACTAAAAATGAACTCACTAAACATCAAAACAGACATCGTGGCATTAAAATACATGAGTGTGATGAGTGTCCTTTTACGTTTGCGTTCCCATCCGAATTGGTAATTCACAAACGATCGCATCTGCACCCATCATCGAAAGTAAATCCTAAAGGGAAACAACAGTTTGTAGATCCCAGCATGAAACAAACTTTTCAATGCGATCAATGTGAAGCATCGTACACAACCCAGTGGAGGCTAGGTGTTCATTTGCGGGTTCACACCGGAGAGCGTCCGTACAAATGTAAAAAGTGTCCCAAAGCGTACAAAGGAAAAGATGAATTGACTAGGCACGATAAATTTGTGCATCTTGCCTTAAAACCATATAAGTGTGATGAATGTtcgaaaacattttcaattcgGAATAACTTGCGTGCTCACAAATTAAGTCATactcaaaataaaagtgttaatCCTGGAGTAGATTTAAAAGCATTGGACTCCAATGCTGTTCTTCAAGATTCAACAAGTGTCAGCGATGATTTACCAAAAGCAATCACTTCGGAACACAATGTTGTCGAGCCGCAAGACACACATCATGAAACTCCTTTAGATTTAGAGAcgaattcaatcaaattttcagATGTGCCATTGTATGATGATATTCAAAAGGAGTGTtttcaattgtatttgaatgaCGTTATTATAGAAGAAATCAACGAGACTGAAAATGCAGAAGATTTTTCAATGGAGAGAATTTTCGAGACAGAAGATTTTTTCAGAGAGGAAGTTATAGATTCAGAAATTGCAGAGATGGATAATTACAGTTTAGAGTCAACAGCTGGGTTTACAGCAATTTTGAATGGTGGAATCAGTAACATTTCCATTGATGATAACGAAAATATGCAATGTAATGAAGAAGTGGAAGCTTCATTACCACCGAATACCTCCCCCACAAATGATAAAAGTATCGATGATTCTGTGGAAATTTGTAAAACCTCTGGAACACCTCCGTTTCAAAAGAAGACACTTTCCAGTGACTTCAAAAGTAATTTGGATGATCCTGCTGCTGTAGAGACTGAGATTCCAGGAGTAGAAGATTCACTTGACAGTTTAGTTGAAAAGTCTACagctgaaataaaaattaatagaaagACCGCAGAAAAATCTTTCATGTGCGAATCATGTTCCAGATGTTTTGCAACCAAAAGAATGCTTAAAATTCACACATCAACTCACAAcgaaaaatcatttgaatgtACTGACTGCGATAAAGCATTCGTCACACAGCTCTACCTCAATCGACACCGAGCAAGAGTTCACACAAATGATAAACCCTATCAGTGTGAAGAGTGTTCCTCCTCCTTCTCAAAACAAGGGTATCTGAATAGTCACGTACGGGTGCAGCACAATGGACAAAGACCATATAAATGTGAGAAATGTCCCTTAACATTTTTTACTAAACAAATTCGTGAGCGGCATACATTTGAGACGCATCATTCAAATGAAAAGTTACAATGTGACATTTGTTCTGAATTGTTTCCATCGGATTTTAATCTTCAACGGCATAGAAGAAAGGAACACCAGTGCACGCATAAATGTAAACATTGTAATCAATCTTTTCCAAAGCGATCTCTTTTGGTTGAACATGAACGCATACACACCGGTGCAAGACCTTTCAAATGTGACGAATGCCCCAAAGAGTTTGCTACCAAGTATTCACTAACCCAACATATTACCAAAGATCACAATGGTGTTTTCGAATTCAAATGTGATAAATGTACTAGAACGTTCGGTCAAAAACTAGGACTTACCATGCACAAATTGTCTCACAAGGAACAGAAATCTTATCAATGTGATTGTTGTCCCGAAGCGTTCACTGGATTTACAGCATTTATAGCGCACTCAAAACGCGTACACAATGTCGAAATAAAACCCTACGTGTGTGGAGAATGTGACAAAGTTTTTTCCTCTCAATATGCACTTAACTGCCATAAGAGGGCACACACCGGAGAACGTGCACATCAATGCGAACTCTGTCCAAAAGCCTTCATGTCACATAGTAAACTCAATCGGCATCAGTGCACAGTGCATTATAACAATGGAAAACATTTGTGTGATGAATGTGATTTTGCTTGTGAAACTCGAGCTGAGTTAATCGTTCATCAACGCATTCACAAGGGTGACAAAAATTACTTTGATTGTGATCAGTGTGAGAAATCGTTCTCCGCGCAATGGCAACTGGACGCACACATACGCGACCACACACGGGAGCGaccatttaaatgtgaatattGTCCCAAAACATATAAATCCAAGAATTTTCTTAGTAAGCATATTTCGTCAGTTCATCTTGGCGTCcagtaa
Protein Sequence
MEVDIELDHVNDLEAEKIIASSRDSATNSGLEPLFEFVDCSEAYSKPAVKDVNIDVNVAIYKCTDCDKSFKTQFQLTIHNKKHLTGGKPFTCEECSDTFEKEIDLKQHLKIVHQLKWKPFQCDVCDKSFSIQRRLTIHTRVHTGERPYACEFCPETYKSSDELLVHKKSMHFESYACDECSYTCISEAILTSHKRIHNGEKTFVCDKCPAAFLYKNQLKRHNQLVHQQTTKAFNCHICSISLHTELSLHRHLKKSHDYKWSCKICCKPFQSLTRCTRHERSHTGEKSVKCDKCFKQFTSTTSLKQHYLVDHNDKFQYLCDECPKSFREKVNLEIHKNVHTKKTPFECDECVEAFTAITPLIIHKKAAHQCTVKPYECDQCDASYASQCLLTSHQRSHTGELPYPCSDCPKRFKTKNELTKHQNRHRGIKIHECDECPFTFAFPSELVIHKRSHLHPSSKVNPKGKQQFVDPSMKQTFQCDQCEASYTTQWRLGVHLRVHTGERPYKCKKCPKAYKGKDELTRHDKFVHLALKPYKCDECSKTFSIRNNLRAHKLSHTQNKSVNPGVDLKALDSNAVLQDSTSVSDDLPKAITSEHNVVEPQDTHHETPLDLETNSIKFSDVPLYDDIQKECFQLYLNDVIIEEINETENAEDFSMERIFETEDFFREEVIDSEIAEMDNYSLESTAGFTAILNGGISNISIDDNENMQCNEEVEASLPPNTSPTNDKSIDDSVEICKTSGTPPFQKKTLSSDFKSNLDDPAAVETEIPGVEDSLDSLVEKSTAEIKINRKTAEKSFMCESCSRCFATKRMLKIHTSTHNEKSFECTDCDKAFVTQLYLNRHRARVHTNDKPYQCEECSSSFSKQGYLNSHVRVQHNGQRPYKCEKCPLTFFTKQIRERHTFETHHSNEKLQCDICSELFPSDFNLQRHRRKEHQCTHKCKHCNQSFPKRSLLVEHERIHTGARPFKCDECPKEFATKYSLTQHITKDHNGVFEFKCDKCTRTFGQKLGLTMHKLSHKEQKSYQCDCCPEAFTGFTAFIAHSKRVHNVEIKPYVCGECDKVFSSQYALNCHKRAHTGERAHQCELCPKAFMSHSKLNRHQCTVHYNNGKHLCDECDFACETRAELIVHQRIHKGDKNYFDCDQCEKSFSAQWQLDAHIRDHTRERPFKCEYCPKTYKSKNFLSKHISSVHLGVQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
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