Basic Information

Insect: Sylvicola cinctus
Gene Symbol: -
Assembly: GCA_963854165.1
Location: OY974082.1:36879197-36896322[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 7.9e-06 0.0004 20.4 1.4 1 23 807 829 807 829 0.96

2 20 3.8e-05 0.0019 18.3 0.1 1 23 835 857 835 857 0.97

3 20 3.7e-05 0.0019 18.3 1.5 2 23 864 885 863 885 0.97

4 20 0.00014 0.0072 16.5 2.9 3 23 893 913 891 913 0.98

5 20 4.1e-05 0.0021 18.2 5.5 1 23 919 941 919 941 0.99

6 20 0.00012 0.0063 16.7 5.7 1 23 947 969 947 969 0.97

7 20 4.7e-06 0.00024 21.2 5.9 1 23 975 997 975 997 0.98

8 20 1.8e-07 9.3e-06 25.6 2.7 1 23 1003 1025 1003 1025 0.98

9 20 0.00013 0.0064 16.7 6.7 1 23 1031 1053 1031 1053 0.97

10 20 4e-05 0.002 18.2 7.2 1 23 1059 1081 1059 1081 0.98

11 20 4.3e-07 2.2e-05 24.4 2.5 1 23 1087 1109 1087 1109 0.98

12 20 1.8e-07 9.3e-06 25.6 3.8 1 23 1115 1137 1115 1137 0.99

13 20 8.9e-07 4.5e-05 23.4 3.1 1 23 1143 1165 1143 1165 0.98

14 20 2.1e-06 0.00011 22.2 8.5 1 23 1171 1193 1171 1193 0.98

15 20 8e-06 0.0004 20.4 6.4 1 23 1199 1221 1199 1221 0.98

16 20 6.3e-05 0.0032 17.6 8.8 1 23 1227 1249 1227 1249 0.98

17 20 1.2e-05 0.0006 19.9 3.8 1 23 1255 1278 1255 1278 0.96

18 20 0.00015 0.0076 16.4 0.3 1 23 1284 1306 1284 1306 0.97

19 20 5e-06 0.00025 21.1 1.5 1 23 1316 1338 1316 1338 0.99

20 20 2e-06 0.0001 22.3 0.5 1 23 1344 1367 1344 1367 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	7.9e-06	0.0004	20.4	1.4	1	23	807	829	807	829	0.96
2	20	3.8e-05	0.0019	18.3	0.1	1	23	835	857	835	857	0.97
3	20	3.7e-05	0.0019	18.3	1.5	2	23	864	885	863	885	0.97
4	20	0.00014	0.0072	16.5	2.9	3	23	893	913	891	913	0.98
5	20	4.1e-05	0.0021	18.2	5.5	1	23	919	941	919	941	0.99
6	20	0.00012	0.0063	16.7	5.7	1	23	947	969	947	969	0.97
7	20	4.7e-06	0.00024	21.2	5.9	1	23	975	997	975	997	0.98
8	20	1.8e-07	9.3e-06	25.6	2.7	1	23	1003	1025	1003	1025	0.98
9	20	0.00013	0.0064	16.7	6.7	1	23	1031	1053	1031	1053	0.97
10	20	4e-05	0.002	18.2	7.2	1	23	1059	1081	1059	1081	0.98
11	20	4.3e-07	2.2e-05	24.4	2.5	1	23	1087	1109	1087	1109	0.98
12	20	1.8e-07	9.3e-06	25.6	3.8	1	23	1115	1137	1115	1137	0.99
13	20	8.9e-07	4.5e-05	23.4	3.1	1	23	1143	1165	1143	1165	0.98
14	20	2.1e-06	0.00011	22.2	8.5	1	23	1171	1193	1171	1193	0.98
15	20	8e-06	0.0004	20.4	6.4	1	23	1199	1221	1199	1221	0.98
16	20	6.3e-05	0.0032	17.6	8.8	1	23	1227	1249	1227	1249	0.98
17	20	1.2e-05	0.0006	19.9	3.8	1	23	1255	1278	1255	1278	0.96
18	20	0.00015	0.0076	16.4	0.3	1	23	1284	1306	1284	1306	0.97
19	20	5e-06	0.00025	21.1	1.5	1	23	1316	1338	1316	1338	0.99
20	20	2e-06	0.0001	22.3	0.5	1	23	1344	1367	1344	1367	0.97

Sequence Information

Coding Sequence: atgGCCGCTGTTGTTCGTGTAAAGCGTCGCATAAACGAGGAGCCTCTCAATGCATTTATTCTTAATTGTAAGCGGCCGCGAGTTGAGGAGGGGCCCCTTGACTTGGCCACTAATCGAACTACTGAATCCAccaccattttaaaatttgctggTACCCTTGATTCACAGGACCAAAATATTACATCACAAATCTCAAAACTAACGCAAGACGATGCCAAAAAGTTAGCGTCAAAGACCCGAGTCAGCAACAGAGCAGAAAAACATCGTGAGGAAAAAAGCAATCTAGCCCATGAAGATCGTTTCCGCATTGTAAACTGCTTCAGAGCGCTGGAATCTACTGAGCAGTCAAAGGAAATAACAGTTGTTGACGTAGAACGACAACAATTACAACTGGACACAGAGCAAGCAACAACGTCTTCGGCTGCTAGCACTTCTTCAGCACAGCCGCAAGATGATAACttcgtttttgatttatatttctCAGAAACGCAAATGGGAGAGAATTTCATGGGCGACGACATTGCTGATCTAAGCATTGAACCGTTTGAAATGTTGGTACATGGACGAGAGAGCAATCCACTGTTGTCAGATGATGAAGAGGACTCAGAAGATTCAAATGAAGAAAACAATTGGCGTAATGAATATCCAGATTCAGATGACGAAAAGTTTGTCGTTGGTGATGCCCTAGATAGTTTTAATGGAATGGCAATAAACTCGGACAATGAACTATCCACCACTGATGATGAAGAATATCAAGGATTTGCATATTCGGTAGACAGTGAAGCCATTGGGTTTGAAGATGATGTCGATTATTGTGATGTCAATCGATATGGTGAGGCTTATGCCCGCTACAAACGCAGAGTTTTAAAAGAGTTGAAAGATGATCACGACAGTGACAATGAAGAGCACAGTGGCAGTGCAAACCGACCTGGGTCGTCCATAACGATACCAGCTGGGTCTACGTTATCGCCATCGTCAGCACCGATTGACGCGTCTCGGTCTGCGGCGGTACCAACATCGGCCGGAATACCCTCAAGTGTTCAGTTaggcaaatattttgtgttgacaAATTTGTTTCAACCACCATGCGTTTACAACGTGCCGAAACTTGAAGCGACATCACCCACAGCATCATCATCGACATCACCTAATCAGAAGgTCGAACCAAATAATCCCTATCCTGGTGAATCTGGTCACGTATTAAGTGGGCCGCCTCCGCCCACACACCCAGTTCCTGTAAATTTGGGTGTAAACACACCGTTGTCCATACCCAATCCGGCGGCTGTAATCGAGGCAAACAATCATCATCCATACGCACATCATTTTCCACCACATCATCCACCACATTATCCTAATTATCATCATACGCCCAACCACCATCATTTAGGACAACATTCGCATCAATTGCAATCACCACCGCCTTTAGtatcacaacaacaacaacaacagcagcagcagcaacaacagcagcagcagcagcagcagcaacagcaacaacaacatcaacaacaacaacatcagcaacaacaacagcatcaacaacaacagcagcagcagcaacagcaacagcggCAAAACAGTGGCGGATCGCAATTGATACAGGATACGCGACTGATAAATACCAAAGAAGTGAAAATGGAAGCGCCCACGcctcaacaacagcaacagcaacaagcACAGGCTATGGCATCTCGTGCTATGGAGCAACAGCAACTACAGCAGCATCAACAACCTCCGCCACAACACATCAGTAATGAGCAGCTtttgcagcagcaacaacaacaacaacaacaacaacagcagcagcaacaacaacagcagcagcatcagcaacagcaacaacagcaaaactGTAAGCCAGTGTCGGGACCACATATTCTTAATGCGAGCGAATCAAAAATGCAACCGCCGCCGCCACCACATCCTCCTCCACCGCATGGATCTCAAATGCTTGATGTCCGTGGGGCAGATGGTTCGATTGTAAAAATATCGCCAGGAGAACAGGATCTCAGTAAAGCACTAGGTGGTGAAATTTACAAGATAAATATCGAagatttaagtcaatttttaacGTATCATGAAGTATTTGGTAAGTTACCAAATGATATGGCGCCACCCACGCCCGGTTCCAATAATTTAGTTGTGCCAGCTCCACCACAATCGCATTCAGTGAGCTCATTGACGACCAATGCCATCCAGCAAAACCAGACATCATCTAGTGGTGGTCAAGTGACGCAGCCTGGCACAAGTAGTGGCGGCAGTGACGCATCTGGTGTGCCCACTATTGTGACGCCCAAAATTGAGAATGTTCAGGGCATTGGGGCGGGCAGCATCAACATGGAGGGCGGCAGCAGTACGTCGGGCGAGGACGGTCAGTTGGCATTGGCTGGTGGCGGACAGGCGGGTAACAATATGCTGCACGACTGCAACATCTGCGGAAAGGTATTTGCGTTTCGGTATCAATTAATCGTACATCGTCGATATCACAGTGAGCGCAAACCGTTTATCTGTCAGGTGTGTGGTCAGGCATTTTCGACGACGGTTGATTTGACACGACATGGCAAAATTCATGTGAACACCAACATGCTTATGTGTAACGTATGCTTTCATGTGTTTGCCAACAATGAGAGTCTGGAGCGACACATGAAGCGTCACTTAACAGACAAGCCGTTCGGTTGCAGCATCTGCCAAAAGACATTTGCCCGCAAAGAGCACTTGGACAATCACTTTCGTAGTCACACCGGTGAGACGCCATTCCGGTGTCAGTACTGCGCGAAAACTTTCACTCGCAAGGAGCACATGAATAATCATGTGCGCAAACACACCGGCGAAACGCCACATCGGTGTGACATATGCAAAAAGTCGTTTACGCGCAAGGAGCACTATGTTAATCACTATATGTGGCATACCGGTGAGACTCCGCATCAGTGCACCGTGTGCAACAAAAAGTACACGCGAAAAGAGCACCTCGCCAATCACATGCGATCACACACAAATGACACACCCTTTAAATGCGAGATTTGTGGTAAATCGTTCACGCGCAAAGAGCACTTTACCAATCATATCCTTTGGCATACGGGTGAAACACCGCATCGCTGTGATTTTTGTTCCAAGACGTTTACACGCAAGGAGCATCTGTTGAATCATGTGCGGCAGCACACGGGAGAGTCGCCACATCGGTGTACGTATTGCTTTAAGTCGTTTACGCGTAAGGAGCACCTCATCAATCATGTGCGTCAACATACTGGTGAGACGCCCTTCAAATGCGAGTATTGTCCAAAAGCGTTTACTAGGAAAGATCATTTGGTGAACCACGTTCGGCAGCACACGGGGGAGACTCCCTTCAAGTGCGAATATTGTCCGAAATCGTTCACGCGGAAGGATCATTTGGTGAACCACGTTCGGAAGCACACGGGGGAGACTCCGTTCAAGTGCACGTATTGTCCGAAAGCGTTCACGCGGAAGGAACATTTGGtGAATCACGTCCGTCAACACACGGGTGAATCGCCACACAAATGTACCTACTGCACAAAAAGTTTCACACGGAAGGAGCATCTTACGAATCATATACGAAAGCACACAGGTGATTCGCCGTATCGTTGTCACTTTTGCAACAAAGTGTTCACTCGCAAAGAGCATCTCAACAACCATTTGACTATACATACAGGTGATTCGCCGCACAAATGTGAGTTCTGCAATAAGGCGTTCACCAGAAAGGAGCATCTGACAAATCATTTGCGACATCATTCCGGCGAGAATCCACATGTATGCACTGTTTGCGATAAGCCATTCACCCGCAAAGAATATTTGATTAATCACATGAGCCGTTGTCATACTGGGGAGCGTCCATTTGCTTGTGAGGAGTGCGGAAAGTCTTTCCCACTCAAAGGAAATCTCCTATTCCATCAACGTAGCCACAATAAAGGCGCTCTGGCGGAGCGCCCTTTCCGATGTGATGTCTGCCCGAAAGATTTTATAAGTAAAGGTCATCTTGTGTCACATCGTCGCACACATACAGGAGAGCGACCGTTTTCTTGTCAAATTTGCGGTAAATCATTTATTGGCAAAGGCAACCTCTTGCGCCATGTCAAGAAAAATCATCCCAATGCACAATTGGAGACGACAATGATTCACAGGACTATTCCAACAACGGGAACACATCATCCGACGCCACACACAATTCAACAATTGGTTTCCTCTACAGCGCCTGCAGCGACTACCGCAAATCCCATAGTTCATGTGGCTACCTCCACAATAACGACACAACAagaacagcagcagcaacaacaacaacagcagcaacagcaacaacagcagcaacaacaaactaTGCATCAAATGCCACCACCTCCACTTCCACTTGTTCGGCCGCCAGTGACTTCAGCAATTCCGGTCACCATAATTCACAATAATCCACAGTCAGGTGGCGGACCACCCACATCGGCTGAAACCGCGACAATACAAATTCATCACATGCAACCACCACCTGAACAAAATTCGGTGGTTTACTGA
Protein Sequence: MAAVVRVKRRINEEPLNAFILNCKRPRVEEGPLDLATNRTTESTTILKFAGTLDSQDQNITSQISKLTQDDAKKLASKTRVSNRAEKHREEKSNLAHEDRFRIVNCFRALESTEQSKEITVVDVERQQLQLDTEQATTSSAASTSSAQPQDDNFVFDLYFSETQMGENFMGDDIADLSIEPFEMLVHGRESNPLLSDDEEDSEDSNEENNWRNEYPDSDDEKFVVGDALDSFNGMAINSDNELSTTDDEEYQGFAYSVDSEAIGFEDDVDYCDVNRYGEAYARYKRRVLKELKDDHDSDNEEHSGSANRPGSSITIPAGSTLSPSSAPIDASRSAAVPTSAGIPSSVQLGKYFVLTNLFQPPCVYNVPKLEATSPTASSSTSPNQKVEPNNPYPGESGHVLSGPPPPTHPVPVNLGVNTPLSIPNPAAVIEANNHHPYAHHFPPHHPPHYPNYHHTPNHHHLGQHSHQLQSPPPLVSQQQQQQQQQQQQQQQQQQQQQQQHQQQQHQQQQQHQQQQQQQQQQQRQNSGGSQLIQDTRLINTKEVKMEAPTPQQQQQQQAQAMASRAMEQQQLQQHQQPPPQHISNEQLLQQQQQQQQQQQQQQQQQQQHQQQQQQQNCKPVSGPHILNASESKMQPPPPPHPPPPHGSQMLDVRGADGSIVKISPGEQDLSKALGGEIYKINIEDLSQFLTYHEVFGKLPNDMAPPTPGSNNLVVPAPPQSHSVSSLTTNAIQQNQTSSSGGQVTQPGTSSGGSDASGVPTIVTPKIENVQGIGAGSINMEGGSSTSGEDGQLALAGGGQAGNNMLHDCNICGKVFAFRYQLIVHRRYHSERKPFICQVCGQAFSTTVDLTRHGKIHVNTNMLMCNVCFHVFANNESLERHMKRHLTDKPFGCSICQKTFARKEHLDNHFRSHTGETPFRCQYCAKTFTRKEHMNNHVRKHTGETPHRCDICKKSFTRKEHYVNHYMWHTGETPHQCTVCNKKYTRKEHLANHMRSHTNDTPFKCEICGKSFTRKEHFTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCTYCFKSFTRKEHLINHVRQHTGETPFKCEYCPKAFTRKDHLVNHVRQHTGETPFKCEYCPKSFTRKDHLVNHVRKHTGETPFKCTYCPKAFTRKEHLVNHVRQHTGESPHKCTYCTKSFTRKEHLTNHIRKHTGDSPYRCHFCNKVFTRKEHLNNHLTIHTGDSPHKCEFCNKAFTRKEHLTNHLRHHSGENPHVCTVCDKPFTRKEYLINHMSRCHTGERPFACEECGKSFPLKGNLLFHQRSHNKGALAERPFRCDVCPKDFISKGHLVSHRRTHTGERPFSCQICGKSFIGKGNLLRHVKKNHPNAQLETTMIHRTIPTTGTHHPTPHTIQQLVSSTAPAATTANPIVHVATSTITTQQEQQQQQQQQQQQQQQQQQQTMHQMPPPPLPLVRPPVTSAIPVTIIHNNPQSGGGPPTSAETATIQIHHMQPPPEQNSVVY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -