Scin004708.1


Basic Information
Transcription Factor Domain
Sequence Information
Similar Transcription Factors

Basic Information

Insect
Sylvicola cinctus
Gene Symbol
-
Assembly
GCA_963854165.1
Location
OY974082.1:60208111-60212502[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 31 0.057 2.9 8.3 1.0 2 23 85 107 84 107 0.96
2 31 0.00015 0.0076 16.4 2.4 1 23 136 158 136 158 0.99
3 31 9.5e-06 0.00048 20.2 3.6 1 23 164 186 164 186 0.99
4 31 1.5e-05 0.00074 19.6 0.3 1 23 192 214 192 214 0.99
5 31 3.1e-06 0.00016 21.7 3.5 1 23 220 242 220 242 0.99
6 31 5.4e-05 0.0027 17.8 2.0 1 23 248 270 248 270 0.98
7 31 1.3e-05 0.00064 19.8 1.2 1 23 276 298 276 298 0.99
8 31 1.3e-06 6.6e-05 22.9 3.1 1 23 304 326 304 326 0.99
9 31 2.5e-05 0.0013 18.8 0.5 1 23 332 354 332 354 0.99
10 31 3.1e-05 0.0016 18.6 1.2 1 23 360 382 360 382 0.98
11 31 6.9 3.5e+02 1.7 0.5 1 8 388 395 388 396 0.91
12 31 0.0041 0.21 11.9 2.1 1 23 433 455 433 455 0.98
13 31 1.3 64 4.1 1.1 6 23 482 499 481 499 0.92
14 31 5.6e-05 0.0028 17.8 1.0 1 23 505 527 505 527 0.98
15 31 3.9e-07 2e-05 24.6 0.9 1 23 532 554 532 554 0.99
16 31 0.0015 0.078 13.2 1.5 1 23 560 582 560 582 0.98
17 31 4.5e-06 0.00023 21.2 0.9 1 23 588 610 588 610 0.99
18 31 0.00062 0.031 14.5 2.3 1 23 616 638 616 638 0.97
19 31 0.00067 0.034 14.4 0.2 1 23 644 666 644 666 0.99
20 31 2.8e-05 0.0014 18.7 2.0 1 23 672 694 672 694 0.98
21 31 0.00018 0.0091 16.2 0.4 1 23 700 722 700 722 0.99
22 31 1e-06 5.2e-05 23.2 0.8 1 23 728 750 728 750 0.99
23 31 7e-05 0.0036 17.5 0.8 1 23 771 793 771 793 0.98
24 31 0.0094 0.47 10.8 0.4 1 23 799 821 799 821 0.98
25 31 3e-05 0.0015 18.6 0.6 1 23 827 849 827 849 0.99
26 31 0.058 2.9 8.3 0.7 1 23 855 877 855 877 0.98
27 31 2.3e-05 0.0012 19.0 0.6 1 23 883 905 883 905 0.99
28 31 0.05 2.5 8.5 1.3 1 23 911 933 911 933 0.98
29 31 0.0044 0.22 11.8 0.7 1 23 939 961 939 961 0.98
30 31 2.5e-05 0.0013 18.9 1.0 1 23 967 989 967 989 0.99
31 31 0.00011 0.0055 16.9 0.8 1 23 995 1017 995 1017 0.98

Sequence Information

Coding Sequence
ATGGACCAATGCGCTGAGaattttctAATGCCGGActccattgaaataaaaaccgaaattgaaattgattctcCCAGATGTGTCGCACCTTGGCTGGATGAAGATGGGaacattaaaagcaaatatttatcGCTAGAAATAAAAGAGGAACCAAGCCCAACAACAGAAATTTTAGAGGAAATAACTTCCGTTTACAGTAACTTCGAAACAGTAATGAGCAATCAGGAGCCAAATATCCAGAATAGACCAATTCGATGTGATGAATGTCCGTGTAAATTTGAAGATAACTTTGTACTAGTcgaccacaaaaaaaaaattcatagtGGAGAGAAACCTGCATGTGATGAAGGTCCCAAGAAGTATTCAGACTTAACAAATCTGAAAAGAAACAAACGAGAGAAGCCCTTCCAGTGTGAGGAATGCCCATGTAAGTTTGGACAAAAGTCTGTTCTAACTATACACAAACGTACCCATACTAAAGAGAGGCCTTTCCAGTGTGATTTGTGTCACAAGGTCTTTTCCGCGAAGTTTAATTTGACCGTTCACAAACGAACACATACTGGAGATAAGCCCTATCAGTGTAATGAATGCCCCAGTAAGTTTGCACAAAGTTCCGCTCTAATTACTCACAAACGTATCCATACTAAAGACAGGCCTTTCCAGTGTAATTTATGTCACAAGGTTTTTTCTGCGAAGTCCAATTTGAGCATTCACAAACGAACACATACTGGAGATAAGCCCTTCCAGTGTGATCAATGCCCCAGTACGTTTCGAGAAAAGTCCCATCTAATTATCCACAAACGTATCCATACTGGAGAGAAGCCCTACCAGTGTAATGAATGCCCTAGCAAGTTTGGACAAAAGTCCGCTCTAAATACCCACAAACGCACTCATACTAAAGAGAGGCCTTTCCAGTGTGATTTATGTCACAAGGTCTTTTCCGCAAAGTCCAATTTGACCATTCACAAACGAACACATACTGGAGATAAGCCCTTCCAGTGTGATGAATGCCCCAGTAAGTTTGGACAAAGTTCCGCtctaaataaacacaaacgtATCCATACTAAAGAGAGGCCTTTCCACTGTGATTTATGTCCCAAGATCTTTTCCATAAAGTCCAATTTGGCCATACACAAACGAATGCATGCTGGAGATAAGCCCTTCCAGTGTGATGAATGCCCGAAAATAAAAGAGGAAGAAAGGCCGACAATAGAAATTTTAGAGGAAGTAACTTCCGTTTACAGTAACGTCGAAATAACAACGAGCAATTGGGAGCCATATATCCAGAATACACCATTTCGATGTGACAAATGTCCGTGTAAATTTGAAGATAACTTTGGACTAGTcgaccataaaaaaattcatactgGAGAGAAACCTTCATGTGATGAAGGTCCCAAGAAGTATTCAGACTTAACCAATCTGAAAAACAAACGAATCCAATGCCTCACTAGGTTTGGAGAAGAGTCCCATCTAATTACGCACAAACGTAGCCATACTGGAAAGAAATTTTTCCAGTGCGATGTATGCCCCAGTAAATTTAGACGTAGAAATGATCTTATTACCCACAAACGTATCCATACCGGAGAGGCCTTCCAGTGTGATTTATGTCCCAAAATCTTTTCCGTGAAGTCCAATTTGACCATACACAAACGGACACATACTGGAGATAAGCCCTTTCAATGTGATCAATGCCCCAGTAAGTTTCGTGAAAGGTCCCGTCTAATTACCCACAAACGTATCCATATTGGAGAGAGGCCTTTCCAGTGTGATTTATGTCCCAAAATCTTTTCCGCGAAGTCCTATTTGACCATACACAAACGGACACATACTGGAGATAAACCCTTCCAGTGTGATGAATGCCCCAGTAAGTTTGGACAAAAGTCCTCTTTAAATACCCACAAACATATCCATATTAAAGTGAGGCCTTTCCAGTGTGATTTATGTCCCAAGATCTTTTCCGCGAAGTCCATTTTGGCCATACACAAACGGACACATACTAGAGACAAGCCCTTCCAGTGTGATCAATGCCCCAGTAAGTTTGTCCATAGTTCTAATCTAATTAACCACAAACGTATTCATACTGGAGAGAAGCCCTACCAGTGTGATCAGTGCCCCAGTAAGTTTGCACAAATCTCCTCTCTAAATATCCACAAACGTATCCACACTAAAGAGAGGCCTTTTCAGTGTGATTTATGTCCCAAGATCTTTTCCGCGAAGTCCAATTTGACCATACACAAACGGACACATACTGGAGATAATGTTTTTGGTCAAATTAACCACAAACGTATCCATACTGGAGAGAAGCCCTTCCAGTGTGATCAATGCCCCAGTAAGTTTCGAAGAAAGCCCCAACTAATTATCCACAAACGTATCCATACTGGAGAAAAGCCTTTCCAGTGTGATGCATGCCCCAGTAAGTTTGCACATATTTCCGGTCTAATTAGCCACAAACGTATCCATACTGGAGAGAAGCCCTACCAGTGTGATGAATGCCCCAGTAAGTTTGGACAAAAGTCCGCTCTAACTACCCACAAACGTATCCATACTGGGGAGAAGCCCTTCCAGTGTGATGAATGCCCTAGTAAGTTTGGTTATATAGCCGGTCTAATTTACCACAGACATACCCATACTGGTGAGAAGCCTTTCCAGTGTGATGAATGTCCCAGTAAGTTTGGGCAAAAGTCCGCTTTAAATATCCACAAACGTACCCATACTGGAGAGAAGCCCTATCAGTGTGATGAATGCCCCAGTAAGTTTGGATATATATCCGGTCTATTTTACCACAGACATATCCATACTGGAGAGAAGCCTTTCCAGTGTGATGCATGCCCCAGTAAGTTTGCCCATATTTCCAGTCTAATTAGCCACAAACGTATCCATACTGGAGAGAAGCCCTACCAGTGTGATGAATGCCCCAGTAAGTTTGGACAAAAGTCCTCTCTAACTACCCACAAACGTATCCATACAGGGGAGAAACCCTTCCAATGTGATCAATGTCCTAGTAAATTTGGAAGAAAAACCAACCTAATTATCCACAAACGGATTCATACTGGAGATAAGCCCTTCCAGTGTGATGACTGA
Protein Sequence
MDQCAENFLMPDSIEIKTEIEIDSPRCVAPWLDEDGNIKSKYLSLEIKEEPSPTTEILEEITSVYSNFETVMSNQEPNIQNRPIRCDECPCKFEDNFVLVDHKKKIHSGEKPACDEGPKKYSDLTNLKRNKREKPFQCEECPCKFGQKSVLTIHKRTHTKERPFQCDLCHKVFSAKFNLTVHKRTHTGDKPYQCNECPSKFAQSSALITHKRIHTKDRPFQCNLCHKVFSAKSNLSIHKRTHTGDKPFQCDQCPSTFREKSHLIIHKRIHTGEKPYQCNECPSKFGQKSALNTHKRTHTKERPFQCDLCHKVFSAKSNLTIHKRTHTGDKPFQCDECPSKFGQSSALNKHKRIHTKERPFHCDLCPKIFSIKSNLAIHKRMHAGDKPFQCDECPKIKEEERPTIEILEEVTSVYSNVEITTSNWEPYIQNTPFRCDKCPCKFEDNFGLVDHKKIHTGEKPSCDEGPKKYSDLTNLKNKRIQCLTRFGEESHLITHKRSHTGKKFFQCDVCPSKFRRRNDLITHKRIHTGEAFQCDLCPKIFSVKSNLTIHKRTHTGDKPFQCDQCPSKFRERSRLITHKRIHIGERPFQCDLCPKIFSAKSYLTIHKRTHTGDKPFQCDECPSKFGQKSSLNTHKHIHIKVRPFQCDLCPKIFSAKSILAIHKRTHTRDKPFQCDQCPSKFVHSSNLINHKRIHTGEKPYQCDQCPSKFAQISSLNIHKRIHTKERPFQCDLCPKIFSAKSNLTIHKRTHTGDNVFGQINHKRIHTGEKPFQCDQCPSKFRRKPQLIIHKRIHTGEKPFQCDACPSKFAHISGLISHKRIHTGEKPYQCDECPSKFGQKSALTTHKRIHTGEKPFQCDECPSKFGYIAGLIYHRHTHTGEKPFQCDECPSKFGQKSALNIHKRTHTGEKPYQCDECPSKFGYISGLFYHRHIHTGEKPFQCDACPSKFAHISSLISHKRIHTGEKPYQCDECPSKFGQKSSLTTHKRIHTGEKPFQCDQCPSKFGRKTNLIIHKRIHTGDKPFQCDD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-