Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 1.5 1.4e+03 -0.8 0.2 18 25 12 19 8 21 0.87

2 6 0.0004 0.35 10.7 0.4 17 40 190 210 178 213 0.87

3 6 0.0043 3.8 7.4 1.2 18 40 219 238 215 240 0.79

4 6 0.00073 0.65 9.8 3.0 2 41 232 267 231 270 0.85

5 6 0.079 70 3.3 2.2 13 37 270 291 264 296 0.75

6 6 6.4e-05 0.057 13.2 4.5 17 43 302 325 287 326 0.83

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	1.5	1.4e+03	-0.8	0.2	18	25	12	19	8	21	0.87
2	6	0.0004	0.35	10.7	0.4	17	40	190	210	178	213	0.87
3	6	0.0043	3.8	7.4	1.2	18	40	219	238	215	240	0.79
4	6	0.00073	0.65	9.8	3.0	2	41	232	267	231	270	0.85
5	6	0.079	70	3.3	2.2	13	37	270	291	264	296	0.75
6	6	6.4e-05	0.057	13.2	4.5	17	43	302	325	287	326	0.83

Coding Sequence: ATGGATGAAAAGGAGGCATTTGATCATGAACATGTTTGTACCATTTGCAACCGCACTGATGAGTCTGAATCGTGGTACAACATCCAATATGAGACCATCATGAAGTATCCTTCAATTTCTATAATTCACGCCATGTCAACGTTAATCGCAAATGAAGAGattAACTCAGAGGACGAGAGCATAGCTGAGATTTGCGACGAATGTTATATTCGTGTGAGTGATGCTTACGACTTGGCCAAAAGTATTCGTAAGAACACTCAACCGCGGTTGCATATCGTCAGTATTGTGAAAGCCCAGTCTGGAAGCTGTAATACGCCAAGTTATGAAGAAGACCAAGAAGAGACGGAACCAGAAGCAGAATCAGAACCAGAACCGGAATCAGAACCAGAACCAGAACCCATTAAACCATCCAAGCAACTCGTCAAAACAAAATGCGTTGTAATCACTAATGATTCCGTAAATAATTCTGAAGCAGAAACTGATGCTATTAGTTTTATGTTGGAACATCTACCTCCCCCAAAAAAACCCAACCCAACAAAACCAAAGGGTATTCTTAAATCACGCGATCACAAATGTGAAGTGTGCAACAGGCAATTTTTGCGCAAATCAAATCTTATTGATCATTTGCGACTGCATGCCAATGTAAAGCCGTTCAAGTGTGAGCACTGCGGCAAGGCGTTTGTGCAGTCGGGCAATTACAAGAGTCACCTGCGTATTCATACCAAGGAGCGCCCATTCAAGTGCACTTACTGCGACAAATCATACAATCAAAAGAGTGCGTTAACGGTGCACATTCGGTCGCACACAAATGAGCGCAATTACGTGTGCGACACATGCGAGAAGACGTTCACAAACGCGTCCGACTTGAAGAAGCACAAAAGGCTGCATGATGCGTCGTTGCACGAGAAGTGCAAGTATTGCGAAAGGGTATTTGTGCAGAAAAGTAATTTGAAGCATCACGTGAAGAAGGTGCATGGTGATAAATTATTGCTTGATAGTTGA
Protein Sequence: MDEKEAFDHEHVCTICNRTDESESWYNIQYETIMKYPSISIIHAMSTLIANEEINSEDESIAEICDECYIRVSDAYDLAKSIRKNTQPRLHIVSIVKAQSGSCNTPSYEEDQEETEPEAESEPEPESEPEPEPIKPSKQLVKTKCVVITNDSVNNSEAETDAISFMLEHLPPPKKPNPTKPKGILKSRDHKCEVCNRQFLRKSNLIDHLRLHANVKPFKCEHCGKAFVQSGNYKSHLRIHTKERPFKCTYCDKSYNQKSALTVHIRSHTNERNYVCDTCEKTFTNASDLKKHKRLHDASLHEKCKYCERVFVQKSNLKHHVKKVHGDKLLLDS

Sequence clustering based on sequence similarity using MMseqs2