Scin001594.1
Basic Information
- Insect
- Sylvicola cinctus
- Gene Symbol
- -
- Assembly
- GCA_963854165.1
- Location
- OY974082.1:21762252-21769060[+]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.027 24 4.8 1.6 20 44 28 50 27 50 0.80 2 10 1.8e-15 1.6e-12 47.0 0.9 3 44 128 167 126 167 0.97 3 10 1.2e-15 1.1e-12 47.5 4.0 2 44 225 265 224 265 0.97 4 10 6 5.4e+03 -2.7 0.1 16 22 484 490 474 491 0.79 5 10 0.0082 7.3 6.5 0.2 12 43 559 587 549 588 0.86 6 10 7 6.2e+03 -2.9 0.1 12 22 760 770 744 774 0.72 7 10 6.8 6.1e+03 -2.9 0.1 18 28 843 853 837 873 0.61 8 10 0.00073 0.65 9.8 0.0 14 43 921 947 913 948 0.89 9 10 3.4 3e+03 -1.9 0.4 18 26 966 974 963 976 0.87 10 10 8.9 7.9e+03 -3.3 0.7 15 25 991 1001 981 1016 0.72
Sequence Information
- Coding Sequence
- ATGTTTCGTTATCAAGAGCGCCTTCAAAAGGCTTTAGAAGACATTAAATCTTCTAAACTCTCAATTGATGAAGCAGCCAATCGGCTATGTGAACAATTGATAAAAACCAGTGGAACGAGTTTGAAAAATCACATGCAAAGACATCATCCGGTGTTACTTTCAAACATAACTGATGCTGATACGGAAGAAAGCGATGAGGTTGAGGAAAATCTGGCAGTTGTAAGCAACCAATTGTATGAAGAACAAACACCTCCAATTTGTGAAGCCTTACctttaaaaagtaaagttgAGGAAGACTACCCTCAGGAAGAAAGCATTGCTAATGACGAATTCAAGGTTGAAGATCCCCTTGAACcagttggaaaaaaaagtagaTCGTTCATTTGGaatcattttgaaaaacttgAAGATACAAATGCTGCCTGCAATCATTGTGGAAAAGTGGTAAAAACAAGTGGAAATACTTCAAATCTTAGAGACCACGTAATGAGGAGGCATCCAGCTTTATTTTCTAATGAAAATGATGGTAATCAGCTTCATGAAGTAGATATTGTGGCATCAAAATCTCAATATTTCAAAGACCGAAAAATGTCTGTCCAGCCGGAGGAAGTAGACAGTCAAAAAGGCGTCGAAAAGGTGAAACCTCGATCCGTGAAAAAACGCAAAATTTCGTACGTTTGGAagcatttcaacaaaatgggGGATAACATGGCGTACTGTAGACATTGTAAAAAGGTGTTAAGAACTAGTGGAAATACTTCAAATCTTATAAGCCACATTACTAAAAAGCATCCTGACGCACCTTTAGCAGTTGTATCTGATGATGAAGAAGACTTCGATAATTTTGGATACTCTGATTGTTTCAACGTTGAACAACATTTGTTTACAGAAGAAAAGGATGAAAGATTTAATACGCTAGATGTCACATGTCGTggatgtaaaatgaaaaatcctATTGTTTTAAGTAACATATTTAAGCCGGAAATATACGCTCTCTACAAAGAGTGCACTGGATTGGATCCATTACTTCATCCCAATTTGCCTAATGCCATTTGCTCGGCATGCATTGCAAGCTGCGAAGCATGGAAATCGTTTTCGAGGCAATGCAAAATAACTGAAGACCTTCTTGTTGAAGAGTTTAAAGCCGAAACACTCAGAAAAGAGGAAGAGTTTAAAGCAGAAACATCTAGGAAAGATGTAGAATCGCAAATGGAAGGAATTTTAAACGAAGACTTAATCACCGATGAAATAAGTGACAATGGGAGTGTTTTTAATGTCGACGATCATAGTGAAAGTGAAAGTGATTCTGATGATTTGTGGGATGACGAACCtttaaatccaataaattacaatgacaacgaaaaattgcataattgtaCGTTGTGccctcaaaaatgtttaactcATGAGAAATTGCAATCACATTTGCTGTTACACAGCTTAGTTgaaaatatgAAATGCCGAAAATGTGACATACCGTTTACACTGGAGGAAGAGTTAGCCGCCCATTGCGAGGACAATAATCTTAACATACATGCAATTACTCACGACCAAGCGTTTCAATGTTCCAAGTGTTTGTGGACTAGTGAAGATGCCGATGAATTCAAGAAGCACACTGACATCTGCATGATTGAATTGCCCGGATATGAAAGCCCACCACCCTACCACCTGAACACGAAGCGCTCTAAACCAACTTGCCCGTTGTGTTTTGAAGAATGCAGTAATATTTCTTCGTTTGAACGTCACCTGCAGGAGAAGCATTTGAATGACGAAGGTGTCGATATTCAGGAGGAGCCCAAAATGTCATACATAGAACGCCTTAATGAAGCTGTAAATGATGTCCAATTCAACAAACTCACGGTTGTGGATGTGGCTCACAAGTATTGCCTTCCGATCAGAGTTATTTGTGGAGAGCTGGGATACAACAAATCCAATAAAGTAATTGATTTAAGGCGCAAGGCTCGGAGACCGCGTGTGCCGAAAACTGTACTTGAGACAGCATTGCCTAAATCAGAAAACATTGAAGTGGAAGAGGTTTTGTCGTCACAATCAATGGATGaagaTAATGATTGGGAAACTGTTATATTCGCAGACACAACTGAGGACGTTGCTGATAACGACAAACATGATGTACAAGAGATTGACGCTGAAGAACATCTTTTGGACGATATTTGTCGTGGATGTAAAACCAAAGATCCAACTATTTtggattacatttttaagcCTGAAATATACGATCTTTTTAAACAATGCACGGGATTGGATCCGTCCCGAAATCGCAATTTATCTAATGCTATATGTATCACGTGTATTGAGCGCCTCCACGAATGGCGCAGCTTTCGACAACAATGTGAAGAAACGGAATTGCTTCTTCAGCAGGAGTGCGAGGCAAGCTCAAAAGAAGATAATATCTCGGGTGAATCGCAGAATGACGAAGAGGATAAACTTTGTTTGGATAATTCACTATCTAACAGAgaatattttatgaacaacAGCGCTCTTTCCGATTTTAAGGCAGATCGATTTTATTGCGAAATATGTTTTAGATCCTACGGGAGTGAGTCTAAGTACAAATCGCATTTGTTGTTCCATGATTACATTAAGAATTTGATTGTACACTCTATTGTTCACGCAAAAGTAGTCCAATGCCCTAATTGTTTACTGCGTTGCAAAAATGTAATCGATTACAAAGACCACATTAAATCATGCATGAATGAACCGCCACGATCAAGGAGTCCACCACCTGACTTTAGGACATCACACGCCAAGCCAGTGTGTCCACTCTGTAAagaggaattaaaaaatatcacaacACTCGAGCAACATTTAAAGGATAATCATATCGAGGATGAGGGTGTAGATATTCAAGAAGTGCTGGAAAGTGTCAAAACGAAGCAGTGTGATAAGTGCAATAAGAAATTCTTTGATGATTATGCTCTGTATTATCACAAATCATTGCGCCACACTGATGTAcgctttaaatgtttactatGTTTTAAGTTGTTTCGCACCAGATCTATACTTCGTGTCCATATGGCTAACTCATGTAAGGGCAGAGACTCAAAGCTGGATGATGTGAACACAAAGGAAATGGAATAG
- Protein Sequence
- MFRYQERLQKALEDIKSSKLSIDEAANRLCEQLIKTSGTSLKNHMQRHHPVLLSNITDADTEESDEVEENLAVVSNQLYEEQTPPICEALPLKSKVEEDYPQEESIANDEFKVEDPLEPVGKKSRSFIWNHFEKLEDTNAACNHCGKVVKTSGNTSNLRDHVMRRHPALFSNENDGNQLHEVDIVASKSQYFKDRKMSVQPEEVDSQKGVEKVKPRSVKKRKISYVWKHFNKMGDNMAYCRHCKKVLRTSGNTSNLISHITKKHPDAPLAVVSDDEEDFDNFGYSDCFNVEQHLFTEEKDERFNTLDVTCRGCKMKNPIVLSNIFKPEIYALYKECTGLDPLLHPNLPNAICSACIASCEAWKSFSRQCKITEDLLVEEFKAETLRKEEEFKAETSRKDVESQMEGILNEDLITDEISDNGSVFNVDDHSESESDSDDLWDDEPLNPINYNDNEKLHNCTLCPQKCLTHEKLQSHLLLHSLVENMKCRKCDIPFTLEEELAAHCEDNNLNIHAITHDQAFQCSKCLWTSEDADEFKKHTDICMIELPGYESPPPYHLNTKRSKPTCPLCFEECSNISSFERHLQEKHLNDEGVDIQEEPKMSYIERLNEAVNDVQFNKLTVVDVAHKYCLPIRVICGELGYNKSNKVIDLRRKARRPRVPKTVLETALPKSENIEVEEVLSSQSMDEDNDWETVIFADTTEDVADNDKHDVQEIDAEEHLLDDICRGCKTKDPTILDYIFKPEIYDLFKQCTGLDPSRNRNLSNAICITCIERLHEWRSFRQQCEETELLLQQECEASSKEDNISGESQNDEEDKLCLDNSLSNREYFMNNSALSDFKADRFYCEICFRSYGSESKYKSHLLFHDYIKNLIVHSIVHAKVVQCPNCLLRCKNVIDYKDHIKSCMNEPPRSRSPPPDFRTSHAKPVCPLCKEELKNITTLEQHLKDNHIEDEGVDIQEVLESVKTKQCDKCNKKFFDDYALYYHKSLRHTDVRFKCLLCFKLFRTRSILRVHMANSCKGRDSKLDDVNTKEME
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -